Rh1CG432300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012071
Physical Location & Seq
Forward (+)
68861633 .. 68864243
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG432300.1

Sequence Viewer

Length: 1020 bp
ATGTTTCATGATTCACCACTCCAGCTTGGTAAAGTAAAAGTAAAAGTAAAAAGCGAGCAAGACACTATTTCCCACGTAACACAGAACAGTTCTCGTTTCAACTTCAAGTCTTCACCTTTAAGCTCCGAACTCAAAAATTGTCGACAAAACCAAACAAAGCCACCAAATTTCTTCTCCATCTCCGATCCCAATCATCACCTGTTCACTCCCAAATCAAAGCTCTGTCCCTTCAGCCAATCCGATCCGTCCAGCTCGGCAATGCTCTGCTCGGTCCGCCGGCCTAACTGGCTCGACCGGCTCCGGTCCAACAAGGGCTTCCCTGCCGGCGACAACCTCGACCTCGACCACTTCCTTAGACATAACCCTAACTCCTCCTCGGAATCCCCGAGTCCCAATGCAGAGTCAACCGAGTCAATTCCACCGGTCTCAAATCGACCCGAATCTTCCAATCCGACCCGAGACGACGGAAAAGGAGAGGCATTGCTGGGCCTGATGAGCACCGCCATCTCCGAGCTGTTCTTCATCGACGGCTCCGAAGAAAGCTCGAGAATTTCCGGCAAAAAAGTCCCCAGAAAACAAACCCACCCTAGAGTTTGTGTCACCTCCTCCACCACCAACTCCAACAGCAAAGAGAACAAGAGGTCAGGCAGCACCAGAAATGGCATACACGACTTTACAGCTATCGCATCGTTGAATTCGGACAACAACAAGGAATTGAATGAGGAGGAAGAGTTGGAAGAGAAAGGGGAGAGAGAGCTGAAGGGGTATTCGAAGAGCGAGGTGACGGTGATAGACACGAGCTGTGAGGTTTGGAAGACGGAGAAGGTGGTGTTTAGGAGGAAGAGTGTGTGGAAAGTGAGGGAGAAGAAGAGCAAGGTGAGGAGCTTTGGGAGGAATAAGAGGAAAGTGGTGAGTGGTGAGGAAGGTGATGATGGCATTGAGGAGAAGAAGAAGGAAGCAAAGGTTTTGGATTGTGAAGGGGATCAATGTATATCTCTCAACCCCATTGAAGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

37.98

Weight (kDa)

8.83

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24500
fragaria_vesca FvH4_7g32890 FvH4_7g32890
malus_domestica MD01G1228100.v1.1 MD07G1298800.v1.1
prunus_persica Prupe.2G318600_v2.0.a1
pyrus_communis pycom01g23630 pycom07g27120
rosa_chinensis RchiOBHm_Chr1g0382841
rosa_laevigata RLG00000026155
rosa_multiflora Rmu_co8155456.1_g000001 Rmu_sc0003389.1_g000012
rosa_roxburghii Rroxscaffold_4G00277850
rosa_rugosa Rorug01G0436700
rosa_samantha Rh1AG461700 Rh1BG418700 Rh1CG432300 Rh1DG450800
rosa_wichuraiana Rw1G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 142
AciI CCGC 2 cut(s) 274, 501
AclWI GGATC 3 cut(s) 179, 236, 990
AcsI RAATTY 3 cut(s) 166, 549, 694
AcuI CTGAAG 2 cut(s) 214, 779
AgeI ACCGGT 1 cut(s) 421
AgsI TTSAA 5 cut(s) 100, 106, 694, 718, 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
Alw21I GWGCWC 1 cut(s) 500
Alw26I GTCTC 2 cut(s) 430, 453
AlwI GGATC 3 cut(s) 179, 236, 990
Ama87I CYCGRG 3 cut(s) 385, 456, 544
AoxI GGCC 2 cut(s) 278, 487
ApeKI GCWGC 1 cut(s) 648
ApoI RAATTY 3 cut(s) 166, 549, 694
AsiGI ACCGGT 1 cut(s) 421
AspS9I GGNCC 3 cut(s) 271, 303, 487
AsuII TTCGAA 1 cut(s) 770
AvaI CYCGRG 3 cut(s) 385, 456, 544
AvaII GGWCC 2 cut(s) 271, 303
BauI CACGAG 1 cut(s) 796
BbsI GAAGAC 2 cut(s) 102, 821
Bbv12I GWGCWC 1 cut(s) 500
BbvI GCAGC 1 cut(s) 660
BccI CCATC 3 cut(s) 185, 512, 926
BceAI ACGGC 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 430, 453
BfaI CTAG 1 cut(s) 588
BglI GCCNNNNNGGC 1 cut(s) 286
BisI GCNGC 1 cut(s) 649
BlsI GCNGC 1 cut(s) 650
Bme18I GGWCC 2 cut(s) 271, 303
BmeT110I CYCGRG 3 cut(s) 385, 456, 544
BmgT120I GGNCC 3 cut(s) 271, 303, 487
BmiI GGNNCC 2 cut(s) 299, 532
BmsI GCATC 1 cut(s) 695
BpiI GAAGAC 2 cut(s) 102, 821
BpmI CTGGAG 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 770
BsaAI YACGTR 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 375
BsaWI WCCGGW 2 cut(s) 300, 421
BsaXI ACNNNNNCTCC 6 cut(s) 353, 383, 716, 746, 829, 859
Bse118I RCCGGY 4 cut(s) 276, 294, 323, 421
Bse1I ACTGG 1 cut(s) 290
Bse3DI GCAATG 2 cut(s) 264, 479
Bse8I GATNNNNATC 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 375
BseJI GATNNNNATC 1 cut(s) 189
BseMI GCAATG 2 cut(s) 264, 479
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 6 cut(s) 361, 364, 595, 737, 895, 956
BseXI GCAGC 1 cut(s) 660
BseYI CCCAGC 1 cut(s) 484
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 280, 489
BshTI ACCGGT 1 cut(s) 421
BsiEI CGRYCG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 500
BsiHKCI CYCGRG 3 cut(s) 385, 456, 544
BsiSI CCGG 6 cut(s) 277, 295, 301, 324, 422, 555
BslFI GGGAC 3 cut(s) 210, 375, 551
BsmAI GTCTC 2 cut(s) 430, 453
BsmBI CGTCTC 1 cut(s) 453
BsmFI GGGAC 3 cut(s) 210, 375, 551
BsnI GGCC 2 cut(s) 280, 489
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 3 cut(s) 385, 456, 544
Bsp119I TTCGAA 1 cut(s) 770
Bsp1286I GDGCHC 1 cut(s) 500
Bsp143I GATC 3 cut(s) 184, 241, 982
BspACI CCGC 2 cut(s) 274, 501
BspANI GGCC 2 cut(s) 280, 489
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 299, 532
BspPI GGATC 3 cut(s) 179, 236, 990
BspQI GCTCTTC 2 cut(s) 767, 863
BspT104I TTCGAA 1 cut(s) 770
BspTNI GGTCTC 1 cut(s) 430
BsrDI GCAATG 2 cut(s) 264, 479
BsrFI RCCGGY 4 cut(s) 276, 294, 323, 421
BsrI ACTGG 1 cut(s) 290
BssAI RCCGGY 4 cut(s) 276, 294, 323, 421
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 3 cut(s) 184, 241, 982
BssSI CACGAG 1 cut(s) 796
Bst2BI CACGAG 1 cut(s) 796
Bst4CI ACNGT 2 cut(s) 89, 787
Bst6I CTCTTC 5 cut(s) 723, 732, 767, 836, 863
BstBAI YACGTR 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 770
BstC8I GCNNGC 3 cut(s) 56, 278, 325
BstDEI CTNAG 1 cut(s) 353
BstKTI GATC 3 cut(s) 187, 244, 985
BstMAI GTCTC 2 cut(s) 430, 453
BstMBI GATC 3 cut(s) 184, 241, 982
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 4 cut(s) 273, 286, 295, 495
BstV1I GCAGC 1 cut(s) 660
BstV2I GAAGAC 2 cut(s) 102, 821
BsuRI GGCC 2 cut(s) 280, 489
Cac8I GCNNGC 3 cut(s) 56, 278, 325
CciI TCATGA 1 cut(s) 7
Cfr10I RCCGGY 4 cut(s) 276, 294, 323, 421
Cfr13I GGNCC 3 cut(s) 271, 303, 487
CpoI CGGWCCG 1 cut(s) 271
CspAI ACCGGT 1 cut(s) 421
CspI CGGWCCG 1 cut(s) 271
CviAII CATG 1 cut(s) 8
DdeI CTNAG 1 cut(s) 353
DpnI GATC 3 cut(s) 186, 243, 984
DpnII GATC 3 cut(s) 184, 241, 982
Eam1104I CTCTTC 5 cut(s) 723, 732, 767, 836, 863
EarI CTCTTC 5 cut(s) 723, 732, 767, 836, 863
EciI GGCGGA 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 271, 303
Eco57I CTGAAG 2 cut(s) 214, 779
Eco88I CYCGRG 3 cut(s) 385, 456, 544
EcoRI GAATTC 1 cut(s) 694
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 1 cut(s) 11
FaiI YATR 4 cut(s) 9, 360, 665, 992
FaqI GGGAC 3 cut(s) 210, 375, 551
FatI CATG 1 cut(s) 7
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 649
Fsp4HI GCNGC 1 cut(s) 649
FspBI CTAG 1 cut(s) 588
GluI GCNGC 1 cut(s) 649
GsaI CCCAGC 1 cut(s) 488
GsuI CTGGAG 1 cut(s) 5
HaeIII GGCC 2 cut(s) 280, 489
HapII CCGG 6 cut(s) 277, 295, 301, 324, 422, 555
Hin1II CATG 1 cut(s) 11
HincII GTYRAC 2 cut(s) 143, 405
HindII GTYRAC 2 cut(s) 143, 405
HinfI GANTC 6 cut(s) 11, 380, 388, 401, 410, 440
HpaII CCGG 6 cut(s) 277, 295, 301, 324, 422, 555
Hpy166II GTNNAC 3 cut(s) 143, 204, 405
Hpy188I TCNGA 8 cut(s) 127, 184, 241, 379, 453, 511, 535, 700
Hpy188III TCNNGA 2 cut(s) 8, 546
Hpy8I GTNNAC 3 cut(s) 143, 204, 405
Hpy99I CGWCG 2 cut(s) 467, 530
HpyAV CCTTC 6 cut(s) 238, 754, 817, 917, 946, 971
HpyCH4III ACNGT 2 cut(s) 89, 787
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 273, 286, 295, 495
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 1 cut(s) 11
KroI GCCGGC 2 cut(s) 276, 323
KroNI GCCGGC 2 cut(s) 278, 325
Kzo9I GATC 3 cut(s) 184, 241, 982
LguI GCTCTTC 2 cut(s) 767, 863
LmnI GCTCC 4 cut(s) 128, 303, 536, 882
Lsp1109I GCAGC 1 cut(s) 660
LweI GCATC 1 cut(s) 695
MaeI CTAG 1 cut(s) 588
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 3 cut(s) 76, 598, 781
MalI GATC 3 cut(s) 186, 243, 984
MboI GATC 3 cut(s) 184, 241, 982
MhlI GDGCHC 1 cut(s) 500
MluCI AATT 6 cut(s) 136, 166, 414, 549, 694, 713
MlyI GAGTC 3 cut(s) 397, 410, 419
MmeI TCCRAC 4 cut(s) 330, 476, 645, 714
MroNI GCCGGC 2 cut(s) 276, 323
MseI TTAA 1 cut(s) 119
MspI CCGG 6 cut(s) 277, 295, 301, 324, 422, 555
MwoI GCNNNNNNNGC 4 cut(s) 273, 286, 295, 495
NaeI GCCGGC 2 cut(s) 278, 325
NdeII GATC 3 cut(s) 184, 241, 982
NgoMIV GCCGGC 2 cut(s) 276, 323
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 299, 532
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 2 cut(s) 598, 781
NspV TTCGAA 1 cut(s) 770
PaeR7I CTCGAG 1 cut(s) 544
PagI TCATGA 1 cut(s) 7
PciSI GCTCTTC 2 cut(s) 767, 863
PcsI WCGNNNNNNNCGW 2 cut(s) 383, 531
PdiI GCCGGC 2 cut(s) 278, 325
PfeI GAWTC 3 cut(s) 11, 380, 440
PinAI ACCGGT 1 cut(s) 421
PkrI GCNGC 1 cut(s) 650
PleI GAGTC 3 cut(s) 396, 409, 418
PpsI GAGTC 3 cut(s) 396, 409, 418
Ppu21I YACGTR 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 299, 532
PspPI GGNCC 3 cut(s) 271, 303, 487
Rsr2I CGGWCCG 1 cut(s) 271
RsrII CGGWCCG 1 cut(s) 271
SalI GTCGAC 1 cut(s) 141
SapI GCTCTTC 2 cut(s) 767, 863
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 649
Sau3AI GATC 3 cut(s) 184, 241, 982
Sau96I GGNCC 3 cut(s) 271, 303, 487
SchI GAGTC 3 cut(s) 397, 410, 419
SduI GDGCHC 1 cut(s) 500
SfaNI GCATC 1 cut(s) 695
Sfr274I CTCGAG 1 cut(s) 544
SfuI TTCGAA 1 cut(s) 770
SinI GGWCC 2 cut(s) 271, 303
SlaI CTCGAG 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 6 cut(s) 136, 166, 414, 549, 694, 713
SsiI CCGC 2 cut(s) 274, 501
SspMI CTAG 1 cut(s) 588
TaaI ACNGT 2 cut(s) 89, 787
TaiI ACGT 1 cut(s) 78
TaqI TCGA 8 cut(s) 142, 291, 336, 342, 433, 525, 545, 770
TaqII GACCGA 1 cut(s) 259
TasI AATT 6 cut(s) 136, 166, 414, 549, 694, 713
TfiI GAWTC 3 cut(s) 11, 380, 440
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseFI GTSAC 2 cut(s) 598, 781
TseI GCWGC 1 cut(s) 648
Tsp45I GTSAC 2 cut(s) 598, 781
TspDTI ATGAA 1 cut(s) 511
TspGWI ACGGA 3 cut(s) 234, 480, 833
VpaK11BI GGWCC 2 cut(s) 271, 303
XapI RAATTY 3 cut(s) 166, 549, 694
XhoI CTCGAG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 142
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.