Prupe.2G318600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012071
Physical Location & Seq
Forward (+)
29782412 .. 29784730
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G318600.1

Sequence Viewer

Length: 1218 bp
ATGCTCTGTTCGGTGCCTGCCAGCAAGTCCGGTTCGAACTGGCTGGACCGGCTCCGGTCAAACAAGGGCCTTCCGACCGGCGACAATCTTGACCTCGACCACTTCCTTAGCCGAAACACAAACTCTTCCTCGGAAGTCCCAACTCCCAATGTCTCATCGTCCACAGAGTCGACTCGGCCGGGTTCGGACCGAGTGGTGAATCAGTCCACAACCTCGTGCCCGAACCGAGATAACCAGGGAGAGGCATTCATCGGCCTGGTGAACAACGTTCTCTCGGAGCTATTTTTCATGGGCGGCTCCGACGAACGTTCCAAACTTTTAGGGAAAAAGATTCGTAGAAAACAAGCAAACCCTAGAGTTTGTGTCACTTCCACGGCCAACTATGACAGCAATGCTGCTACTGCAAACGCCACCGAAGAGAAGAGCTCCGACTGGGGTCGAAATGACGAACATGTCCTCGACAAAGCAGCGTGCTTGGACTCGCAAAACGGCAGCTTGATGAAGAATAAGGACTTGGGAAATGTGGGTGGTGAGGAAGGTGAGGAGGTGGAAGAGGAGGAAGAGGAAGAGAAGGAGGAGTTGAGAGAGCTGAAAGGGTATTCGATCAGCGAAGTGACGGTGATCGATACAAGTTGCGGGGTTTGGAAGACGGAGAAGGTGGTGTTTAGGAGGAAGAATGTGTGGAAAGTTAGGGAGAAGAAGGCCAAAGTTCGGAAGTTCGGGAGACGTAAGAGAAAAGTGGTTGATGAGGAAGTTGGTGTTGAAGGCGGTGATGACATTGACAAGAAGAAGGCTAAGGTTTCAGCTTTGAAGGAAGCTGATGGGGATGAATGTATAGCTCTCAAGTCCACTGAAGGACAGAATTCACAGAATGACACAAGCAATGAAGCCTGCGAGGACACAACAGATAGTCTTAATGAAAGAGGGGAGGAATTTGGCAAAGACATGCCAGATGCTAAAAGCAAAGATGCCAAGAAAGGGCAAGTGCACTTGCAAGTTCTATCTGATTTCAATATTCTGCTGCTGCTTGTATGTGATAACGATTTATTCTGCTCTTATCGAATGTCTTGCAGGTTTCCTTTGAACAGATCACCAAGAAAAATGAAAAAGGGTGACTCCTCTGTTATACTTATTAAAGGCATTCCTACCGACAATAAAAATGGAGGAAAGCTTCTGAGAACGTGTCTCAAGGACATCCAAAAGCAATACACGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

44.89

Weight (kDa)

6.16

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24500
fragaria_vesca FvH4_7g32890 FvH4_7g32890
malus_domestica MD01G1228100.v1.1 MD07G1298800.v1.1
prunus_persica Prupe.2G318600_v2.0.a1
pyrus_communis pycom01g23630 pycom07g27120
rosa_chinensis RchiOBHm_Chr1g0382841
rosa_laevigata RLG00000026155
rosa_multiflora Rmu_co8155456.1_g000001 Rmu_sc0003389.1_g000012
rosa_roxburghii Rroxscaffold_4G00277850
rosa_rugosa Rorug01G0436700
rosa_samantha Rh1AG461700 Rh1BG418700 Rh1CG432300 Rh1DG450800
rosa_wichuraiana Rw1G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
Acc36I ACCTGC 1 cut(s) 1062
AccB1I GGYRCC 1 cut(s) 13
AccI GTMKAC 1 cut(s) 170
AciI CCGC 3 cut(s) 294, 636, 768
AclI AACGTT 2 cut(s) 267, 307
AcoI YGGCCR 2 cut(s) 176, 375
AcsI RAATTY 2 cut(s) 862, 932
AcuI CTGAAG 1 cut(s) 873
AfiI CCNNNNNNNGG 3 cut(s) 241, 711, 978
AflIII ACRYGT 2 cut(s) 451, 1181
AgsI TTSAA 4 cut(s) 764, 811, 1012, 1084
AjnI CCWGG 2 cut(s) 234, 255
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
AluBI AGCT 8 cut(s) 280, 426, 495, 589, 806, 818, 839, 1171
AluI AGCT 8 cut(s) 280, 426, 495, 589, 806, 818, 839, 1171
Alw21I GWGCWC 2 cut(s) 428, 990
Alw26I GTCTC 3 cut(s) 157, 718, 1190
Alw44I GTGCAC 1 cut(s) 986
AoxI GGCC 5 cut(s) 67, 176, 253, 375, 702
ApaLI GTGCAC 1 cut(s) 986
ApeKI GCWGC 5 cut(s) 395, 467, 492, 1021, 1024
ApoI RAATTY 2 cut(s) 862, 932
AspS9I GGNCC 3 cut(s) 46, 67, 187
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 8 cut(s) 208, 271, 542, 551, 631, 782, 1083, 1124
AsuII TTCGAA 1 cut(s) 35
AvaII GGWCC 2 cut(s) 46, 187
BaeGI GKGCMC 2 cut(s) 221, 990
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 428
BauI CACGAG 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 653
Bbv12I GWGCWC 2 cut(s) 428, 990
BbvI GCAGC 5 cut(s) 382, 479, 504, 1008, 1011
BccI CCATC 1 cut(s) 815
BceAI ACGGC 2 cut(s) 390, 505
BcgI CGANNNNNNTGC 2 cut(s) 1050, 1084
BciT130I CCWGG 2 cut(s) 236, 257
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 3 cut(s) 157, 718, 1190
BfaI CTAG 1 cut(s) 354
BfuAI ACCTGC 1 cut(s) 1062
BisI GCNGC 6 cut(s) 295, 396, 468, 493, 1022, 1025
BlsI GCNGC 6 cut(s) 296, 397, 469, 494, 1023, 1026
Bme1390I CCNGG 3 cut(s) 180, 236, 257
Bme18I GGWCC 2 cut(s) 46, 187
BmgT120I GGNCC 3 cut(s) 46, 67, 187
BmiI GGNNCC 3 cut(s) 15, 53, 298
BmrFI CCNGG 3 cut(s) 180, 236, 257
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 2 cut(s) 943, 958
BmuI ACTGGG 1 cut(s) 442
BoxI GACNNNNGTC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 653
BplI GAGNNNNNCTC 2 cut(s) 410, 442
Bpu10I CCTNAGC 2 cut(s) 107, 795
Bpu14I TTCGAA 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 827, 1172
BpuMI CCSGG 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 624
BsaJI CCNNGG 3 cut(s) 129, 235, 372
BsaWI WCCGGW 2 cut(s) 29, 54
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 711, 978
Bse118I RCCGGY 2 cut(s) 48, 77
Bse1I ACTGG 2 cut(s) 44, 437
Bse3DI GCAATG 2 cut(s) 397, 889
BseBI CCWGG 2 cut(s) 236, 257
BseCI ATCGAT 1 cut(s) 624
BseDI CCNNGG 3 cut(s) 129, 235, 372
BseGI GGATG 2 cut(s) 832, 1194
BseLI CCNNNNNNNGG 3 cut(s) 241, 711, 978
BseMI GCAATG 2 cut(s) 397, 889
BseMII CTCAG 1 cut(s) 1166
BseNI ACTGG 2 cut(s) 44, 437
BseRI GAGGAG 4 cut(s) 557, 569, 590, 1108
BseSI GKGCMC 2 cut(s) 221, 990
BseX3I CGGCCG 1 cut(s) 176
BseXI GCAGC 5 cut(s) 382, 479, 504, 1008, 1011
Bsh1285I CGRYCG 2 cut(s) 78, 179
BshFI GGCC 5 cut(s) 69, 178, 255, 377, 704
BshNI GGYRCC 1 cut(s) 13
BshVI ATCGAT 1 cut(s) 624
BsiEI CGRYCG 2 cut(s) 78, 179
BsiHKAI GWGCWC 2 cut(s) 428, 990
BsiSI CCGG 5 cut(s) 30, 49, 55, 78, 179
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 3 cut(s) 241, 711, 978
BsmAI GTCTC 3 cut(s) 157, 718, 1190
BsmBI CGTCTC 1 cut(s) 718
BsmFI GGGAC 1 cut(s) 122
BsmI GAATGC 2 cut(s) 245, 1140
BsnI GGCC 5 cut(s) 69, 178, 255, 377, 704
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 3 cut(s) 221, 428, 990
Bsp143I GATC 3 cut(s) 603, 621, 1088
BspACI CCGC 3 cut(s) 294, 636, 768
BspANI GGCC 5 cut(s) 69, 178, 255, 377, 704
BspCNI CTCAG 1 cut(s) 1167
BspDI ATCGAT 1 cut(s) 624
BspLI GGNNCC 3 cut(s) 15, 53, 298
BspMI ACCTGC 1 cut(s) 1062
BspQI GCTCTTC 1 cut(s) 416
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 397, 889
BsrFI RCCGGY 2 cut(s) 48, 77
BsrI ACTGG 2 cut(s) 44, 437
BssAI RCCGGY 2 cut(s) 48, 77
BssECI CCNNGG 3 cut(s) 129, 235, 372
BssMI GATC 3 cut(s) 603, 621, 1088
BssSI CACGAG 1 cut(s) 214
Bst2BI CACGAG 1 cut(s) 214
Bst2UI CCWGG 2 cut(s) 236, 257
Bst4CI ACNGT 1 cut(s) 619
Bst6I CTCTTC 6 cut(s) 130, 411, 416, 546, 555, 561
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 4 cut(s) 18, 22, 472, 892
BstDEI CTNAG 3 cut(s) 107, 795, 1175
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 832, 1194
BstKTI GATC 3 cut(s) 606, 624, 1091
BstMAI GTCTC 3 cut(s) 157, 718, 1190
BstMBI GATC 3 cut(s) 603, 621, 1088
BstMCI CGRYCG 2 cut(s) 78, 179
BstMWI GCNNNNNNNGC 2 cut(s) 49, 401
BstNI CCWGG 2 cut(s) 236, 257
BstNSI RCATGY 2 cut(s) 455, 949
BstPAI GACNNNNGTC 1 cut(s) 435
BstSCI CCNGG 3 cut(s) 178, 234, 255
BstSLI GKGCMC 2 cut(s) 221, 990
BstV1I GCAGC 5 cut(s) 382, 479, 504, 1008, 1011
BstV2I GAAGAC 1 cut(s) 653
BstZI CGGCCG 1 cut(s) 176
Bsu15I ATCGAT 1 cut(s) 624
BsuRI GGCC 5 cut(s) 69, 178, 255, 377, 704
BsuTUI ATCGAT 1 cut(s) 624
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 2 cut(s) 832, 1194
BtsIMutI CAGTG 1 cut(s) 849
BveI ACCTGC 1 cut(s) 1062
Cac8I GCNNGC 4 cut(s) 18, 22, 472, 892
Cfr10I RCCGGY 2 cut(s) 48, 77
Cfr13I GGNCC 3 cut(s) 46, 67, 187
ClaI ATCGAT 1 cut(s) 624
CpoI CGGWCCG 1 cut(s) 187
CspI CGGWCCG 1 cut(s) 187
CviAII CATG 3 cut(s) 289, 452, 946
DdeI CTNAG 3 cut(s) 107, 795, 1175
DpnI GATC 3 cut(s) 605, 623, 1090
DpnII GATC 3 cut(s) 603, 621, 1088
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
EaeI YGGCCR 2 cut(s) 176, 375
EagI CGGCCG 1 cut(s) 176
Eam1104I CTCTTC 6 cut(s) 130, 411, 416, 546, 555, 561
EarI CTCTTC 6 cut(s) 130, 411, 416, 546, 555, 561
Ecl136II GAGCTC 1 cut(s) 426
EclXI CGGCCG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 428
Eco47I GGWCC 2 cut(s) 46, 187
Eco52I CGGCCG 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 873
EcoICRI GAGCTC 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 862
EcoRII CCWGG 2 cut(s) 234, 255
EcoT38I GRGCYC 1 cut(s) 428
Esp3I CGTCTC 1 cut(s) 718
FaeI CATG 3 cut(s) 292, 455, 949
FaiI YATR 7 cut(s) 290, 384, 453, 836, 947, 1033, 1127
FaqI GGGAC 1 cut(s) 122
FatI CATG 3 cut(s) 288, 451, 945
FauI CCCGC 1 cut(s) 629
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 6 cut(s) 295, 396, 468, 493, 1022, 1025
FokI GGATG 2 cut(s) 839, 1181
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 6 cut(s) 295, 396, 468, 493, 1022, 1025
FspBI CTAG 1 cut(s) 354
GluI GCNGC 6 cut(s) 295, 396, 468, 493, 1022, 1025
HaeIII GGCC 5 cut(s) 69, 178, 255, 377, 704
HapII CCGG 5 cut(s) 30, 49, 55, 78, 179
Hin1II CATG 3 cut(s) 292, 455, 949
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 1169
HinfI GANTC 6 cut(s) 167, 172, 199, 331, 479, 1115
HpaII CCGG 5 cut(s) 30, 49, 55, 78, 179
HphI GGTGA 8 cut(s) 208, 271, 542, 551, 631, 782, 1083, 1124
Hpy166II GTNNAC 6 cut(s) 162, 171, 207, 262, 849, 988
Hpy188I TCNGA 9 cut(s) 75, 133, 187, 277, 301, 430, 714, 1006, 1176
Hpy188III TCNNGA 2 cut(s) 89, 721
Hpy8I GTNNAC 6 cut(s) 162, 171, 207, 262, 849, 988
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 9 cut(s) 80, 530, 565, 649, 694, 758, 784, 805, 848
HpyCH4III ACNGT 1 cut(s) 619
HpyCH4IV ACGT 4 cut(s) 267, 307, 727, 1181
HpyCH4V TGCA 4 cut(s) 404, 988, 994, 1071
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 401
HpyF3I CTNAG 3 cut(s) 107, 795, 1175
HpySE526I ACGT 4 cut(s) 267, 307, 727, 1181
Hsp92II CATG 3 cut(s) 292, 455, 949
Kzo9I GATC 3 cut(s) 603, 621, 1088
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 4 cut(s) 57, 277, 302, 431
Lsp1109I GCAGC 5 cut(s) 382, 479, 504, 1008, 1011
LweI GCATC 2 cut(s) 943, 958
MaeI CTAG 1 cut(s) 354
MaeII ACGT 4 cut(s) 267, 307, 727, 1181
MaeIII GTNAC 3 cut(s) 364, 613, 1112
MalI GATC 3 cut(s) 605, 623, 1090
MboI GATC 3 cut(s) 603, 621, 1088
MhlI GDGCHC 3 cut(s) 221, 428, 990
MluCI AATT 2 cut(s) 862, 932
MlyI GAGTC 4 cut(s) 166, 176, 473, 1109
MmeI TCCRAC 3 cut(s) 98, 324, 453
MseI TTAA 2 cut(s) 915, 1134
MspI CCGG 5 cut(s) 30, 49, 55, 78, 179
MspR9I CCNGG 3 cut(s) 180, 236, 257
Mva1269I GAATGC 2 cut(s) 245, 1140
MvaI CCWGG 2 cut(s) 236, 257
MwoI GCNNNNNNNGC 2 cut(s) 49, 401
NciI CCSGG 1 cut(s) 180
NdeII GATC 3 cut(s) 603, 621, 1088
NlaIII CATG 3 cut(s) 292, 455, 949
NlaIV GGNNCC 3 cut(s) 15, 53, 298
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 3 cut(s) 364, 613, 1112
NspI RCATGY 2 cut(s) 455, 949
NspV TTCGAA 1 cut(s) 35
PciI ACATGT 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 416
PctI GAATGC 2 cut(s) 245, 1140
PfeI GAWTC 2 cut(s) 199, 331
PkrI GCNGC 6 cut(s) 296, 397, 469, 494, 1023, 1026
PleI GAGTC 4 cut(s) 166, 175, 473, 1109
PpsI GAGTC 4 cut(s) 166, 175, 473, 1109
PscI ACATGT 1 cut(s) 451
PshAI GACNNNNGTC 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 428
Psp1406I AACGTT 2 cut(s) 267, 307
Psp6I CCWGG 2 cut(s) 234, 255
PspGI CCWGG 2 cut(s) 234, 255
PspN4I GGNNCC 3 cut(s) 15, 53, 298
PspPI GGNCC 3 cut(s) 46, 67, 187
Rsr2I CGGWCCG 1 cut(s) 187
RsrII CGGWCCG 1 cut(s) 187
SacI GAGCTC 1 cut(s) 428
SalI GTCGAC 1 cut(s) 169
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 2 cut(s) 915, 1134
SatI GCNGC 6 cut(s) 295, 396, 468, 493, 1022, 1025
Sau3AI GATC 3 cut(s) 603, 621, 1088
Sau96I GGNCC 3 cut(s) 46, 67, 187
SchI GAGTC 4 cut(s) 166, 176, 473, 1109
ScrFI CCNGG 3 cut(s) 180, 236, 257
SduI GDGCHC 3 cut(s) 221, 428, 990
SfaNI GCATC 2 cut(s) 943, 958
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 2 cut(s) 46, 187
SmlI CTYRAG 2 cut(s) 842, 1187
SmoI CTYRAG 2 cut(s) 842, 1187
Sse9I AATT 2 cut(s) 862, 932
SsiI CCGC 3 cut(s) 294, 636, 768
SspI AATATT 1 cut(s) 1015
SspMI CTAG 1 cut(s) 354
SstI GAGCTC 1 cut(s) 428
StyD4I CCNGG 3 cut(s) 178, 234, 255
TaaI ACNGT 1 cut(s) 619
TaiI ACGT 4 cut(s) 270, 310, 730, 1184
TaqI TCGA 8 cut(s) 35, 96, 170, 439, 459, 602, 624, 1060
TaqII GACCGA 1 cut(s) 204
TasI AATT 2 cut(s) 862, 932
TauI GCSGC 1 cut(s) 297
TfiI GAWTC 2 cut(s) 199, 331
Tru1I TTAA 2 cut(s) 915, 1134
Tru9I TTAA 2 cut(s) 915, 1134
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 3 cut(s) 364, 613, 1112
TseI GCWGC 5 cut(s) 395, 467, 492, 1021, 1024
Tsp45I GTSAC 3 cut(s) 364, 613, 1112
TspDTI ATGAA 7 cut(s) 238, 277, 515, 843, 900, 933, 1118
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 1 cut(s) 856
VneI GTGCAC 1 cut(s) 986
VpaK11BI GGWCC 2 cut(s) 46, 187
XapI RAATTY 2 cut(s) 862, 932
XceI RCATGY 2 cut(s) 455, 949
XmiI GTMKAC 1 cut(s) 170
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.