FvH4_7g32890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012071
Physical Location & Seq
Forward (+)
23559626 .. 23562206
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32890.t1

Sequence Viewer

Length: 693 bp
ATGCTCTGCTCCGTCCGCGCCACCAAGTCCGGTCCCAACTGGCTGGACCGCCTCCGGTCCAACAAGGGCTTCCCTGCCTGCGACAACCTCGACCTCGACCACTTCCTTAAACATAACCCCACCTCCTCCTCGGAATCCCCAAACCCCAATGCCGACTCAACTCCACTTGTCTCAAATCGACCCGAATCTTCCGGTCCGACCCGAGACGCCAAAAAGGGAGAGGCATTGCTGGGCCTGATGAGCACCGCCATCTCCGAGCTGTTCTTCATCGACGGCTCCGAAGAAAGCTCCAGACTTTCCGGGAAAAAAGTCCCCAGAAAACAAACCCACCCCAGACTCTGTGTCACTAGCAAACTCAAGAGCTCAGGCAGCATTGGAAATGACGTAAATGACCTTAGGACTGTGCCTTCGTTGAATTCGAAGAATGAGGTAGAGTTGGAGGAGAGAGGGGAGAGAGAGCTGAAGGGGTATTCGAAGAGCGAAGTGACGGTGATCGATACGAGCTGTGAAGTTTGGAAGACGGAGAAGTTGGTGTTTAGGAGAAAGAGTGTTTGGAAAGTGAGGGAGAAGAAGAGCAAGGTGAGGAGCTTTGGGAGGAATAAGAGGAAAGTGGTGAGTGGTGATGAGGAAGGTGATGATGGCATTGAGGAGAAGAGGAAGAAGAAGAAGGAAGCCGAGGTTTCGGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.69

Weight (kDa)

9.36

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24500
fragaria_vesca FvH4_7g32890 FvH4_7g32890
malus_domestica MD01G1228100.v1.1 MD07G1298800.v1.1
prunus_persica Prupe.2G318600_v2.0.a1
pyrus_communis pycom01g23630 pycom07g27120
rosa_chinensis RchiOBHm_Chr1g0382841
rosa_laevigata RLG00000026155
rosa_multiflora Rmu_co8155456.1_g000001 Rmu_sc0003389.1_g000012
rosa_roxburghii Rroxscaffold_4G00277850
rosa_rugosa Rorug01G0436700
rosa_samantha Rh1AG461700 Rh1BG418700 Rh1CG432300 Rh1DG450800
rosa_wichuraiana Rw1G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 18
AciI CCGC 3 cut(s) 16, 49, 246
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 207
AgsI TTSAA 1 cut(s) 415
AhdI GACNNNNNGTC 1 cut(s) 341
AjuI GAANNNNNNNTTGG 4 cut(s) 53, 85, 535, 567
AluBI AGCT 6 cut(s) 259, 288, 363, 460, 504, 588
AluI AGCT 6 cut(s) 259, 288, 363, 460, 504, 588
Alw21I GWGCWC 2 cut(s) 245, 365
Alw26I GTCTC 2 cut(s) 175, 198
AlwNI CAGNNNCTG 1 cut(s) 339
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 415
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 5 cut(s) 32, 46, 57, 194, 232
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 5 cut(s) 502, 592, 625, 632, 644
AsuII TTCGAA 2 cut(s) 419, 473
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 4 cut(s) 32, 46, 57, 194
AxyI CCTNAGG 1 cut(s) 395
BanII GRGCYC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 2 cut(s) 245, 365
BbvI GCAGC 1 cut(s) 381
BccI CCATC 2 cut(s) 257, 632
BceAI ACGGC 1 cut(s) 289
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 175, 198
BfaI CTAG 1 cut(s) 348
BisI GCNGC 1 cut(s) 370
BlsI GCNGC 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 301
Bme18I GGWCC 4 cut(s) 32, 46, 57, 194
BmeRI GACNNNNNGTC 1 cut(s) 341
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 5 cut(s) 32, 46, 57, 194, 232
BmiI GGNNCC 2 cut(s) 34, 277
BmrFI CCNGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 364
Bpu14I TTCGAA 2 cut(s) 419, 473
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 301
Bsa29I ATCGAT 1 cut(s) 495
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 129, 675
BsaWI WCCGGW 3 cut(s) 29, 54, 191
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 532, 562
Bse1I ACTGG 1 cut(s) 44
Bse21I CCTNAGG 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 224
BseCI ATCGAT 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 129, 675
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 5 cut(s) 115, 118, 455, 598, 662
BseXI GCAGC 1 cut(s) 381
BseYI CCCAGC 1 cut(s) 229
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 234
BshVI ATCGAT 1 cut(s) 495
BsiHKAI GWGCWC 2 cut(s) 245, 365
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 4 cut(s) 30, 55, 192, 300
BslFI GGGAC 2 cut(s) 18, 296
BsmAI GTCTC 2 cut(s) 175, 198
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 2 cut(s) 18, 296
BsnI GGCC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 201
Bsp119I TTCGAA 2 cut(s) 419, 473
Bsp1286I GDGCHC 2 cut(s) 245, 365
Bsp143I GATC 2 cut(s) 492, 685
BspACI CCGC 3 cut(s) 16, 49, 246
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 377
BspDI ATCGAT 1 cut(s) 495
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 34, 277
BspQI GCTCTTC 2 cut(s) 470, 566
BspT104I TTCGAA 2 cut(s) 419, 473
BsrDI GCAATG 1 cut(s) 224
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 129, 675
BssMI GATC 2 cut(s) 492, 685
BssNI GRCGYC 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 403, 490
Bst6I CTCTTC 3 cut(s) 470, 566, 647
BstACI GRCGYC 1 cut(s) 207
BstBI TTCGAA 2 cut(s) 419, 473
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 364, 395
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 2 cut(s) 495, 688
BstMAI GTCTC 2 cut(s) 175, 198
BstMBI GATC 2 cut(s) 492, 685
BstMWI GCNNNNNNNGC 3 cut(s) 15, 240, 369
BstSCI CCNGG 1 cut(s) 299
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 524
BstXI CCANNNNNNTGG 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 495
Bsu36I CCTNAGG 1 cut(s) 395
BsuRI GGCC 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 495
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 339
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 5 cut(s) 32, 46, 57, 194, 232
ClaI ATCGAT 1 cut(s) 495
CpoI CGGWCCG 1 cut(s) 194
CseI GACGC 1 cut(s) 215
CspI CGGWCCG 1 cut(s) 194
DdeI CTNAG 2 cut(s) 364, 395
DpnI GATC 2 cut(s) 494, 687
DpnII GATC 2 cut(s) 492, 685
DriI GACNNNNNGTC 1 cut(s) 341
Eam1104I CTCTTC 3 cut(s) 470, 566, 647
Eam1105I GACNNNNNGTC 1 cut(s) 341
EarI CTCTTC 3 cut(s) 470, 566, 647
Ecl136II GAGCTC 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 365
Eco47I GGWCC 4 cut(s) 32, 46, 57, 194
Eco53kI GAGCTC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 482
Eco81I CCTNAGG 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 365
Esp3I CGTCTC 1 cut(s) 198
FaiI YATR 1 cut(s) 114
FaqI GGGAC 2 cut(s) 18, 296
Fnu4HI GCNGC 1 cut(s) 370
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 1 cut(s) 370
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 370
GsaI CCCAGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 1 cut(s) 234
HapII CCGG 4 cut(s) 30, 55, 192, 300
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 207
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 4 cut(s) 134, 155, 185, 336
HpaII CCGG 4 cut(s) 30, 55, 192, 300
HphI GGTGA 5 cut(s) 502, 592, 625, 632, 644
Hpy188I TCNGA 5 cut(s) 133, 198, 256, 280, 685
Hpy188III TCNNGA 2 cut(s) 291, 358
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 4 cut(s) 417, 457, 623, 661
HpyCH4III ACNGT 2 cut(s) 403, 490
HpyCH4IV ACGT 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 240, 369
HpyF3I CTNAG 2 cut(s) 364, 395
HpySE526I ACGT 1 cut(s) 384
Hsp92I GRCGYC 1 cut(s) 207
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 492, 685
LguI GCTCTTC 2 cut(s) 470, 566
LmnI GCTCC 4 cut(s) 14, 281, 293, 585
Lsp1109I GCAGC 1 cut(s) 381
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 343, 484
MalI GATC 2 cut(s) 494, 687
MboI GATC 2 cut(s) 492, 685
MhlI GDGCHC 2 cut(s) 245, 365
MluCI AATT 1 cut(s) 415
MlyI GAGTC 2 cut(s) 149, 330
MmeI TCCRAC 3 cut(s) 84, 221, 417
MseI TTAA 1 cut(s) 108
MspI CCGG 4 cut(s) 30, 55, 192, 300
MspR9I CCNGG 1 cut(s) 301
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 3 cut(s) 15, 240, 369
NciI CCSGG 1 cut(s) 301
NdeII GATC 2 cut(s) 492, 685
NlaIV GGNNCC 2 cut(s) 34, 277
NmuCI GTSAC 2 cut(s) 343, 484
NspV TTCGAA 2 cut(s) 419, 473
PciSI GCTCTTC 2 cut(s) 470, 566
PcsI WCGNNNNNNNCGW 2 cut(s) 276, 416
PfeI GAWTC 2 cut(s) 134, 185
PfoI TCCNGGA 1 cut(s) 299
PkrI GCNGC 1 cut(s) 371
PleI GAGTC 2 cut(s) 149, 330
PpsI GAGTC 2 cut(s) 149, 330
Psp124BI GAGCTC 1 cut(s) 365
PspFI CCCAGC 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 34, 277
PspPI GGNCC 5 cut(s) 32, 46, 57, 194, 232
PstNI CAGNNNCTG 1 cut(s) 339
Rsr2I CGGWCCG 1 cut(s) 194
RsrII CGGWCCG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 365
SapI GCTCTTC 2 cut(s) 470, 566
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 370
Sau3AI GATC 2 cut(s) 492, 685
Sau96I GGNCC 5 cut(s) 32, 46, 57, 194, 232
SchI GAGTC 2 cut(s) 149, 330
ScrFI CCNGG 1 cut(s) 301
SduI GDGCHC 2 cut(s) 245, 365
SfuI TTCGAA 2 cut(s) 419, 473
SinI GGWCC 4 cut(s) 32, 46, 57, 194
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 1 cut(s) 415
SsiI CCGC 3 cut(s) 16, 49, 246
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 365
StyD4I CCNGG 1 cut(s) 299
TaaI ACNGT 2 cut(s) 403, 490
TaiI ACGT 1 cut(s) 387
TaqI TCGA 7 cut(s) 90, 96, 178, 270, 419, 473, 495
TasI AATT 1 cut(s) 415
TfiI GAWTC 2 cut(s) 134, 185
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 2 cut(s) 343, 484
TseI GCWGC 1 cut(s) 369
Tsp45I GTSAC 2 cut(s) 343, 484
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 536
VpaK11BI GGWCC 4 cut(s) 32, 46, 57, 194
XapI RAATTY 1 cut(s) 415
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.