Rroxscaffold_4G00277850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012071
Physical Location & Seq
Reverse (-)
1095127 .. 1097541
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277850.1

Sequence Viewer

Length: 1023 bp
ATGCTCTGCTCGGTCCGCCGGCCTAACTGGCTCGACCGGCTCCGGTCCAACAAGGGCTTCCCAGCCGGCGACAACCTCGACCTCGACCACTTCCTTAGACATAACCCTAACTCCTCCTCGGAATCCCCGAGTCCCAATGCAGAGTCAACCGAGTCAATTCCACCGGTCTCAAATCGACCCGAATCTTCCAATCCGACCCGAGACGACGGAAAAGGAGAGGCATTGCTGGGCCTGATGAGCACCGCCATCTCCGAGCTGTTCTTCATCGACGGCTCCGAAGAAAGCTCGAGAGTTTCCGGCAAAAAAGTCCCCAGAAAACAAACTCACCCCAGAGTTTGTGTCACCTCCACCTCCACCACCAACTCCAACAGCAAAGAGAACAAGAGCTCGGGCAGCACCAGAAATGGCACACACGACTTTACAGCTATCACATCGTTGAATTCTGACAACAACAAAGAATTGAATGAGGAGGAAGAGTTGGAAGAGAAAGGGGAGAGAGAGCTGAAGGGGTATTCGAAGAGCGAGGTGACGGTGATAGACACGAGCTGTGAGGTTTGGAAGACGGAGAAGGTGGTGTTTAGGAGGAAGAGTGTGTGGAAAGTGAGGGAGAAGAAGAGCAAGGTGAGGAGCTTTGGGAGGAATAAGAGGAAAGTGGTGAGTGGTGAGGAAGGTGATGATGGCATTGAGGAGAAGAATAAGGAAGCAAAGGTTTTGGATTGTGAAGGGGATCAATGTATATCTCTCAACCCCATTGAAAATTCACAGAATGACGCAAGGAAGGAAGTTTACAAAGACACCACAGATAATCTAAATGACAGAGGGAAAGAATTCAGCAAGGACGACATACCAGATAATAATAGAAAAGATTTAGAAAAGGGGTTTCCCTTGAACAGACCACCAAGAAAAACAATGAAGGATGGCTCGTCTGTTGTCTTTATTAAAGGCATTCCCACATATGAGAAAAATGAAGGAAAGCTTCCTAGGAAGTGTCTCAAGGACAGCCAAAGGAAATACAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

38.31

Weight (kDa)

8.7

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24500
fragaria_vesca FvH4_7g32890 FvH4_7g32890
malus_domestica MD01G1228100.v1.1 MD07G1298800.v1.1
prunus_persica Prupe.2G318600_v2.0.a1
pyrus_communis pycom01g23630 pycom07g27120
rosa_chinensis RchiOBHm_Chr1g0382841
rosa_laevigata RLG00000026155
rosa_multiflora Rmu_co8155456.1_g000001 Rmu_sc0003389.1_g000012
rosa_roxburghii Rroxscaffold_4G00277850
rosa_rugosa Rorug01G0436700
rosa_samantha Rh1AG461700 Rh1BG418700 Rh1CG432300 Rh1DG450800
rosa_wichuraiana Rw1G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 16, 243
AclWI GGATC 1 cut(s) 735
AcsI RAATTY 3 cut(s) 439, 757, 827
AcuI CTGAAG 1 cut(s) 524
AgeI ACCGGT 1 cut(s) 163
AgsI TTSAA 4 cut(s) 439, 463, 755, 889
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 8 cut(s) 256, 285, 387, 425, 502, 546, 630, 976
AluI AGCT 8 cut(s) 256, 285, 387, 425, 502, 546, 630, 976
Alw21I GWGCWC 2 cut(s) 242, 389
Alw26I GTCTC 3 cut(s) 172, 195, 995
AlwI GGATC 1 cut(s) 735
Ama87I CYCGRG 4 cut(s) 127, 198, 286, 388
AoxI GGCC 2 cut(s) 20, 229
ApeKI GCWGC 1 cut(s) 393
ApoI RAATTY 3 cut(s) 439, 757, 827
AsiGI ACCGGT 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 827
AspA2I CCTAGG 1 cut(s) 980
AspS9I GGNCC 3 cut(s) 13, 45, 229
AsuHPI GGTGA 8 cut(s) 317, 334, 538, 544, 634, 667, 674, 683
AsuII TTCGAA 1 cut(s) 515
AvaI CYCGRG 4 cut(s) 127, 198, 286, 388
AvaII GGWCC 2 cut(s) 13, 45
AvrII CCTAGG 1 cut(s) 980
BanII GRGCYC 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 770, 802
BauI CACGAG 1 cut(s) 541
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 2 cut(s) 242, 389
BbvI GCAGC 1 cut(s) 405
BccI CCATC 3 cut(s) 254, 671, 911
BceAI ACGGC 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 172, 195, 995
BfaI CTAG 1 cut(s) 981
BglI GCCNNNNNGGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 394
BlnI CCTAGG 1 cut(s) 980
BlsI GCNGC 1 cut(s) 395
Bme18I GGWCC 2 cut(s) 13, 45
BmeT110I CYCGRG 4 cut(s) 127, 198, 286, 388
BmgT120I GGNCC 3 cut(s) 13, 45, 229
BmiI GGNNCC 2 cut(s) 41, 274
BpiI GAAGAC 1 cut(s) 566
Bpu14I TTCGAA 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 977
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 117, 980
BsaWI WCCGGW 2 cut(s) 42, 163
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 461, 491, 574, 604
Bse118I RCCGGY 4 cut(s) 18, 36, 65, 163
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 117, 980
BseGI GGATG 1 cut(s) 922
BseMI GCAATG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 5 cut(s) 103, 106, 482, 640, 701
BseXI GCAGC 1 cut(s) 405
BseYI CCCAGC 2 cut(s) 61, 226
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 2 cut(s) 22, 231
BshTI ACCGGT 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 242, 389
BsiHKCI CYCGRG 4 cut(s) 127, 198, 286, 388
BsiSI CCGG 6 cut(s) 19, 37, 43, 66, 164, 297
BslFI GGGAC 2 cut(s) 117, 293
BsmAI GTCTC 3 cut(s) 172, 195, 995
BsmBI CGTCTC 1 cut(s) 195
BsmFI GGGAC 2 cut(s) 117, 293
BsmI GAATGC 1 cut(s) 945
BsnI GGCC 2 cut(s) 22, 231
Bso31I GGTCTC 1 cut(s) 172
BsoBI CYCGRG 4 cut(s) 127, 198, 286, 388
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 242, 389
Bsp143I GATC 1 cut(s) 727
BspACI CCGC 2 cut(s) 16, 243
BspANI GGCC 2 cut(s) 22, 231
BspLI GGNNCC 2 cut(s) 41, 274
BspPI GGATC 1 cut(s) 735
BspQI GCTCTTC 2 cut(s) 512, 608
BspT104I TTCGAA 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 221
BsrFI RCCGGY 4 cut(s) 18, 36, 65, 163
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 4 cut(s) 18, 36, 65, 163
BssECI CCNNGG 2 cut(s) 117, 980
BssMI GATC 1 cut(s) 727
BssSI CACGAG 1 cut(s) 541
BssT1I CCWWGG 1 cut(s) 980
Bst2BI CACGAG 1 cut(s) 541
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 5 cut(s) 468, 477, 512, 581, 608
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 2 cut(s) 20, 67
BstDEI CTNAG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 922
BstKTI GATC 1 cut(s) 730
BstMAI GTCTC 3 cut(s) 172, 195, 995
BstMBI GATC 1 cut(s) 727
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 5 cut(s) 15, 28, 37, 237, 393
BstV1I GCAGC 1 cut(s) 405
BstV2I GAAGAC 1 cut(s) 566
BsuRI GGCC 2 cut(s) 22, 231
BtsCI GGATG 1 cut(s) 922
Cac8I GCNNGC 2 cut(s) 20, 67
Cfr10I RCCGGY 4 cut(s) 18, 36, 65, 163
Cfr13I GGNCC 3 cut(s) 13, 45, 229
CpoI CGGWCCG 1 cut(s) 13
CseI GACGC 1 cut(s) 779
CspAI ACCGGT 1 cut(s) 163
CspI CGGWCCG 1 cut(s) 13
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 729
DpnII GATC 1 cut(s) 727
Eam1104I CTCTTC 5 cut(s) 468, 477, 512, 581, 608
EarI CTCTTC 5 cut(s) 468, 477, 512, 581, 608
EciI GGCGGA 1 cut(s) 5
Ecl136II GAGCTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 980
Eco24I GRGCYC 1 cut(s) 389
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 13, 45
Eco53kI GAGCTC 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 524
Eco88I CYCGRG 4 cut(s) 127, 198, 286, 388
EcoICRI GAGCTC 1 cut(s) 387
EcoRI GAATTC 2 cut(s) 439, 827
EcoT14I CCWWGG 1 cut(s) 980
EcoT38I GRGCYC 1 cut(s) 389
ErhI CCWWGG 1 cut(s) 980
Esp3I CGTCTC 1 cut(s) 195
FaiI YATR 5 cut(s) 102, 737, 845, 955, 957
FalI AAGNNNNNCTT 2 cut(s) 960, 992
FaqI GGGAC 2 cut(s) 117, 293
FauNDI CATATG 1 cut(s) 955
Fnu4HI GCNGC 1 cut(s) 394
FokI GGATG 1 cut(s) 929
FriOI GRGCYC 1 cut(s) 389
Fsp4HI GCNGC 1 cut(s) 394
FspBI CTAG 1 cut(s) 981
GluI GCNGC 1 cut(s) 394
GsaI CCCAGC 2 cut(s) 65, 230
HaeIII GGCC 2 cut(s) 22, 231
HapII CCGG 6 cut(s) 19, 37, 43, 66, 164, 297
HgaI GACGC 1 cut(s) 779
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 5 cut(s) 122, 130, 143, 152, 182
HpaII CCGG 6 cut(s) 19, 37, 43, 66, 164, 297
HphI GGTGA 8 cut(s) 317, 334, 538, 544, 634, 667, 674, 683
Hpy166II GTNNAC 2 cut(s) 147, 787
Hpy188I TCNGA 5 cut(s) 121, 195, 253, 277, 445
Hpy188III TCNNGA 1 cut(s) 288
Hpy8I GTNNAC 2 cut(s) 147, 787
Hpy99I CGWCG 2 cut(s) 209, 272
HpyAV CCTTC 7 cut(s) 499, 562, 662, 716, 772, 907, 962
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 28, 37, 237, 393
HpyF3I CTNAG 1 cut(s) 95
KroI GCCGGC 2 cut(s) 18, 65
KroNI GCCGGC 2 cut(s) 20, 67
Kzo9I GATC 1 cut(s) 727
LguI GCTCTTC 2 cut(s) 512, 608
LmnI GCTCC 3 cut(s) 45, 278, 627
Lsp1109I GCAGC 1 cut(s) 405
MaeI CTAG 1 cut(s) 981
MaeIII GTNAC 2 cut(s) 340, 526
MalI GATC 1 cut(s) 729
MboI GATC 1 cut(s) 727
MhlI GDGCHC 2 cut(s) 242, 389
MluCI AATT 5 cut(s) 156, 439, 458, 757, 827
MlyI GAGTC 3 cut(s) 139, 152, 161
MmeI TCCRAC 4 cut(s) 72, 218, 390, 459
MroNI GCCGGC 2 cut(s) 18, 65
MroXI GAANNNNTTC 1 cut(s) 827
MseI TTAA 1 cut(s) 939
MspI CCGG 6 cut(s) 19, 37, 43, 66, 164, 297
Mva1269I GAATGC 1 cut(s) 945
MwoI GCNNNNNNNGC 5 cut(s) 15, 28, 37, 237, 393
NaeI GCCGGC 2 cut(s) 20, 67
NdeI CATATG 1 cut(s) 955
NdeII GATC 1 cut(s) 727
NgoMIV GCCGGC 2 cut(s) 18, 65
NlaIV GGNNCC 2 cut(s) 41, 274
NmuCI GTSAC 2 cut(s) 340, 526
NspV TTCGAA 1 cut(s) 515
PaeR7I CTCGAG 1 cut(s) 286
PciSI GCTCTTC 2 cut(s) 512, 608
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 273
PctI GAATGC 1 cut(s) 945
PdiI GCCGGC 2 cut(s) 20, 67
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 2 cut(s) 122, 182
PinAI ACCGGT 1 cut(s) 163
PkrI GCNGC 1 cut(s) 395
PleI GAGTC 3 cut(s) 138, 151, 160
PpsI GAGTC 3 cut(s) 138, 151, 160
Psp124BI GAGCTC 1 cut(s) 389
PspFI CCCAGC 2 cut(s) 61, 226
PspN4I GGNNCC 2 cut(s) 41, 274
PspPI GGNCC 3 cut(s) 13, 45, 229
Rsr2I CGGWCCG 1 cut(s) 13
RsrII CGGWCCG 1 cut(s) 13
SacI GAGCTC 1 cut(s) 389
SapI GCTCTTC 2 cut(s) 512, 608
SaqAI TTAA 1 cut(s) 939
SatI GCNGC 1 cut(s) 394
Sau3AI GATC 1 cut(s) 727
Sau96I GGNCC 3 cut(s) 13, 45, 229
SchI GAGTC 3 cut(s) 139, 152, 161
SduI GDGCHC 2 cut(s) 242, 389
Sfr274I CTCGAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 515
SinI GGWCC 2 cut(s) 13, 45
SlaI CTCGAG 1 cut(s) 286
SmlI CTYRAG 2 cut(s) 286, 992
SmoI CTYRAG 2 cut(s) 286, 992
Sse9I AATT 5 cut(s) 156, 439, 458, 757, 827
SsiI CCGC 2 cut(s) 16, 243
SspMI CTAG 1 cut(s) 981
SstI GAGCTC 1 cut(s) 389
StyI CCWWGG 1 cut(s) 980
TaaI ACNGT 1 cut(s) 532
TaqI TCGA 7 cut(s) 33, 78, 84, 175, 267, 287, 515
TasI AATT 5 cut(s) 156, 439, 458, 757, 827
TfiI GAWTC 2 cut(s) 122, 182
Tru1I TTAA 1 cut(s) 939
Tru9I TTAA 1 cut(s) 939
TseFI GTSAC 2 cut(s) 340, 526
TseI GCWGC 1 cut(s) 393
Tsp45I GTSAC 2 cut(s) 340, 526
TspDTI ATGAA 3 cut(s) 253, 926, 981
TspGWI ACGGA 2 cut(s) 222, 578
VpaK11BI GGWCC 2 cut(s) 13, 45
XapI RAATTY 3 cut(s) 439, 757, 827
XhoI CTCGAG 1 cut(s) 286
XmaJI CCTAGG 1 cut(s) 980
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 1 cut(s) 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.