pycom01g23630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012071
Physical Location & Seq
Forward (+)
20886223 .. 20888684
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23630.3

Sequence Viewer

Length: 1248 bp
ATGACATTAGACGATAGTATATTAAAAGTAAAAGCAACTTCACCTGCCGCCACGGTCGTTTCAAGTTTCAAGCTTTCAGAATTCGAACCCAGAAAACCTTATTTCTCTCCATATCCGGCTGCAACTCCCGACAGTCAAAGCCCGTCGAGCTCCAACCCACCTGGCCTTTCAGATCCGTCCCCCTCAGCAATGCTCTGTTCTGTGCCAGCGACCAAGTCCGGGTCGAACTGGCTGAACCGGCTCTGGTCCAACAAAGGCTTCCCCACCTGCGAGAGTTCCGACCTCGACAACTTCCTTACCCGAAACCTAAGCTCTTCCTCGGAATTCCCGAATCCCAATGTTGTCTCACCATGCACAGATTCGACTCGCCCGGATTCGGACCGAGTCGATAATCGCTACGGAACATCGTACCCCAGCCGAGACGACCAGAGAGGGGCAATCATCGGGATGATGAGCAATGTTCTGTCGGAGCTATTTTTTATGGGCGGCGCCGACGAAAGCTCTAAAATTTCTGGGAAAAAGATTCCTAGAAAGCAAGCAAACCCCAGAGTCTGTGTCGCTTCCTCGACCAACTCTAATGGCGACGCCACTGCAAATGCAGCGGAAGAGAAGAGCTCCGGCTGCGAGCGGAATGTCGAAAATGCCTTCGACAAGTCGGCGTCCGATAACAGAAGCTTGGTGGGGAAGAAGAAGAAGAAGAAGAAGGAAGGGGGAGGGAATGTGGGTGGTGGGGAATGTGAGGGGGAGGAGGAGGAGGAGGAGGAAGATAAGGGGGAGATGAAAGGGTATTCGAGAAGCGAAGTGACGGTGATCGATACGAGCTGCGGGGTTTGGAAGACGGATAAGTTGGTGTTTAGGAGGAAGAATGTGTGGAAAGTTAGGGAGAAGAAGGTGAAGGGGAGGAGCTTTGGGAGACATAAGAGGAAAGTGGTTGATGAGGAACATGTTGGTGATGACATTGACAAAAAGAAAGCTAAGGTTTCGGTTTTGGATGTTGAAGCTGGTGGGGATGAATGTATAGCTCTCAACTCCACTCATGAAGGACAGAAGCCGCAAAATGACACACTAGATAATCTTAATGATGGAGGGGAAGAATTCGACAAATACCTGCCGGATAATAAAACCAAAGATATAAGAAAAGGGTTTCCTTTCAACCGAACACCGAGAAATTTGGAGAAGCATGGCTCCTCTGTTATATGTGTTAAAGGCCTTCCTACAGATGGTAAAAAAAGGAGGAAAGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

45.35

Weight (kDa)

8.55

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24500
fragaria_vesca FvH4_7g32890 FvH4_7g32890
malus_domestica MD01G1228100.v1.1 MD07G1298800.v1.1
prunus_persica Prupe.2G318600_v2.0.a1
pyrus_communis pycom01g23630 pycom07g27120
rosa_chinensis RchiOBHm_Chr1g0382841
rosa_laevigata RLG00000026155
rosa_multiflora Rmu_co8155456.1_g000001 Rmu_sc0003389.1_g000012
rosa_roxburghii Rroxscaffold_4G00277850
rosa_rugosa Rorug01G0436700
rosa_samantha Rh1AG461700 Rh1BG418700 Rh1CG432300 Rh1DG450800
rosa_wichuraiana Rw1G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 52, 275
Acc36I ACCTGC 3 cut(s) 52, 275, 1116
AccB1I GGYRCC 1 cut(s) 488
AccBSI CCGCTC 1 cut(s) 628
AciI CCGC 6 cut(s) 48, 486, 602, 628, 825, 1052
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 5 cut(s) 80, 323, 507, 1094, 1168
AcyI GRCGYC 3 cut(s) 489, 585, 659
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 4 cut(s) 219, 376, 433, 1220
AflIII ACRYGT 1 cut(s) 943
AgsI TTSAA 4 cut(s) 63, 70, 998, 1153
AjnI CCWGG 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
Alw21I GWGCWC 2 cut(s) 152, 617
Alw26I GTCTC 3 cut(s) 349, 414, 907
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 552
AoxI GGCC 2 cut(s) 163, 1207
ApeKI GCWGC 4 cut(s) 119, 599, 621, 822
ApoI RAATTY 5 cut(s) 80, 323, 507, 1094, 1168
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 246, 379
AsuC2I CCSGG 2 cut(s) 220, 371
AsuHPI GGTGA 5 cut(s) 33, 339, 820, 904, 962
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 2 cut(s) 246, 379
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 2 cut(s) 152, 617
BbsI GAAGAC 1 cut(s) 842
Bbv12I GWGCWC 2 cut(s) 152, 617
BbvCI CCTCAGC 1 cut(s) 184
BbvI GCAGC 4 cut(s) 106, 608, 611, 809
BccI CCATC 2 cut(s) 1076, 1214
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BciT130I CCWGG 1 cut(s) 162
BcnI CCSGG 2 cut(s) 220, 371
BcoDI GTCTC 3 cut(s) 349, 414, 907
BfaI CTAG 2 cut(s) 528, 1067
BfmI CTRYAG 1 cut(s) 1215
BfoI RGCGCY 1 cut(s) 492
BfuAI ACCTGC 3 cut(s) 52, 275, 1116
BisI GCNGC 7 cut(s) 48, 120, 487, 600, 622, 823, 1052
BlsI GCNGC 7 cut(s) 49, 121, 488, 601, 623, 824, 1053
Bme1390I CCNGG 3 cut(s) 162, 220, 371
Bme18I GGWCC 2 cut(s) 246, 379
BmgT120I GGNCC 2 cut(s) 246, 379
BmiI GGNNCC 2 cut(s) 490, 1186
BmrFI CCNGG 3 cut(s) 162, 220, 371
BpiI GAAGAC 1 cut(s) 842
BplI GAGNNNNNCTC 2 cut(s) 599, 631
Bpu10I CCTNAGC 3 cut(s) 184, 308, 975
Bpu14I TTCGAA 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 220, 371
Bsa29I ATCGAT 1 cut(s) 813
BsaHI GRCGYC 3 cut(s) 489, 585, 659
BsaJI CCNNGG 2 cut(s) 51, 318
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 4 cut(s) 219, 376, 433, 1220
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 233
Bse3DI GCAATG 2 cut(s) 195, 463
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 813
BseDI CCNNGG 2 cut(s) 51, 318
BseGI GGATG 3 cut(s) 453, 997, 1015
BseLI CCNNNNNNNGG 4 cut(s) 219, 376, 433, 1220
BseMI GCAATG 2 cut(s) 195, 463
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 7 cut(s) 761, 764, 767, 770, 773, 916, 1177
BseXI GCAGC 4 cut(s) 106, 608, 611, 809
BseYI CCCAGC 1 cut(s) 413
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 165, 1209
BshNI GGYRCC 1 cut(s) 488
BshVI ATCGAT 1 cut(s) 813
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 152, 617
BsiSI CCGG 6 cut(s) 116, 219, 238, 371, 618, 1112
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 4 cut(s) 219, 376, 433, 1220
BsmAI GTCTC 3 cut(s) 349, 414, 907
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 165, 1209
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 152, 617
Bsp143I GATC 2 cut(s) 172, 810
BspACI CCGC 6 cut(s) 48, 486, 602, 628, 825, 1052
BspANI GGCC 2 cut(s) 165, 1209
BspCNI CTCAG 1 cut(s) 197
BspDI ATCGAT 1 cut(s) 813
BspHI TCATGA 1 cut(s) 1036
BspLI GGNNCC 2 cut(s) 490, 1186
BspMI ACCTGC 3 cut(s) 52, 275, 1116
BspPI GGATC 1 cut(s) 167
BspQI GCTCTTC 2 cut(s) 319, 605
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 628
BsrDI GCAATG 2 cut(s) 195, 463
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 51, 318
BssMI GATC 2 cut(s) 172, 810
BssNI GRCGYC 3 cut(s) 489, 585, 659
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 55, 134, 808
Bst6I CTCTTC 3 cut(s) 319, 600, 605
BstACI GRCGYC 3 cut(s) 489, 585, 659
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 207, 537, 626
BstDEI CTNAG 3 cut(s) 184, 308, 975
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 453, 997, 1015
BstH2I RGCGCY 1 cut(s) 492
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 2 cut(s) 175, 813
BstMAI GTCTC 3 cut(s) 349, 414, 907
BstMBI GATC 2 cut(s) 172, 810
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 4 cut(s) 147, 238, 599, 621
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 947
BstSCI CCNGG 3 cut(s) 160, 218, 369
BstSFI CTRYAG 1 cut(s) 1215
BstV1I GCAGC 4 cut(s) 106, 608, 611, 809
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 813
BsuRI GGCC 2 cut(s) 165, 1209
BsuTUI ATCGAT 1 cut(s) 813
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 3 cut(s) 453, 997, 1015
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 588
BveI ACCTGC 3 cut(s) 52, 275, 1116
Cac8I GCNNGC 3 cut(s) 207, 537, 626
CaiI CAGNNNCTG 1 cut(s) 552
CciI TCATGA 1 cut(s) 1036
CfoI GCGC 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 246, 379
ClaI ATCGAT 1 cut(s) 813
CpoI CGGWCCG 1 cut(s) 379
CseI GACGC 2 cut(s) 593, 648
Csp6I GTAC 1 cut(s) 409
CspI CGGWCCG 1 cut(s) 379
CviAII CATG 4 cut(s) 351, 944, 1037, 1181
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 184, 308, 975
DinI GGCGCC 1 cut(s) 490
DpnI GATC 2 cut(s) 174, 812
DpnII GATC 2 cut(s) 172, 810
Eam1104I CTCTTC 3 cut(s) 319, 600, 605
EarI CTCTTC 3 cut(s) 319, 600, 605
Ecl136II GAGCTC 2 cut(s) 150, 615
Eco147I AGGCCT 1 cut(s) 1209
Eco24I GRGCYC 2 cut(s) 152, 617
Eco47I GGWCC 2 cut(s) 246, 379
Eco53kI GAGCTC 2 cut(s) 150, 615
EcoICRI GAGCTC 2 cut(s) 150, 615
EcoRI GAATTC 3 cut(s) 80, 323, 1094
EcoRII CCWGG 1 cut(s) 160
EcoT38I GRGCYC 2 cut(s) 152, 617
EgeI GGCGCC 1 cut(s) 490
EheI GGCGCC 1 cut(s) 490
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 4 cut(s) 354, 947, 1040, 1184
FaqI GGGAC 1 cut(s) 163
FatI CATG 4 cut(s) 350, 943, 1036, 1180
FauI CCCGC 1 cut(s) 818
Fnu4HI GCNGC 7 cut(s) 48, 120, 487, 600, 622, 823, 1052
FokI GGATG 3 cut(s) 460, 1004, 1022
FriOI GRGCYC 2 cut(s) 152, 617
Fsp4HI GCNGC 7 cut(s) 48, 120, 487, 600, 622, 823, 1052
FspBI CTAG 2 cut(s) 528, 1067
GlaI GCGC 1 cut(s) 490
GluI GCNGC 7 cut(s) 48, 120, 487, 600, 622, 823, 1052
GsaI CCCAGC 1 cut(s) 417
HaeII RGCGCY 1 cut(s) 492
HaeIII GGCC 2 cut(s) 165, 1209
HapII CCGG 6 cut(s) 116, 219, 238, 371, 618, 1112
HgaI GACGC 2 cut(s) 593, 648
HhaI GCGC 1 cut(s) 491
Hin1I GRCGYC 3 cut(s) 489, 585, 659
Hin1II CATG 4 cut(s) 354, 947, 1040, 1184
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HindIII AAGCTT 3 cut(s) 71, 673, 1239
HinfI GANTC 7 cut(s) 331, 359, 364, 374, 384, 523, 549
HpaII CCGG 6 cut(s) 116, 219, 238, 371, 618, 1112
HphI GGTGA 5 cut(s) 33, 339, 820, 904, 962
Hpy188I TCNGA 7 cut(s) 79, 172, 280, 322, 379, 469, 664
Hpy188III TCNNGA 5 cut(s) 128, 328, 445, 792, 1037
Hpy99I CGWCG 3 cut(s) 148, 497, 587
HpyAV CCTTC 7 cut(s) 655, 697, 701, 883, 889, 1034, 1220
HpyCH4III ACNGT 3 cut(s) 55, 134, 808
HpyCH4V TGCA 4 cut(s) 122, 354, 593, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 238, 599, 621
HpyF3I CTNAG 3 cut(s) 184, 308, 975
Hsp92I GRCGYC 3 cut(s) 489, 585, 659
Hsp92II CATG 4 cut(s) 354, 947, 1040, 1184
HspAI GCGC 1 cut(s) 489
KasI GGCGCC 1 cut(s) 488
Kzo9I GATC 2 cut(s) 172, 810
LguI GCTCTTC 2 cut(s) 319, 605
LmnI GCTCC 5 cut(s) 155, 469, 620, 903, 1190
Lsp1109I GCAGC 4 cut(s) 106, 608, 611, 809
MaeI CTAG 2 cut(s) 528, 1067
MaeIII GTNAC 1 cut(s) 802
MalI GATC 2 cut(s) 174, 812
MbiI CCGCTC 1 cut(s) 628
MboI GATC 2 cut(s) 172, 810
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 2 cut(s) 152, 617
MluCI AATT 5 cut(s) 80, 323, 507, 1094, 1168
Mly113I GGCGCC 1 cut(s) 489
MlyI GAGTC 3 cut(s) 358, 393, 558
MmeI TCCRAC 4 cut(s) 177, 273, 303, 447
MseI TTAA 3 cut(s) 23, 1077, 1203
MslI CAYNNNNRTG 2 cut(s) 446, 948
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 6 cut(s) 116, 219, 238, 371, 618, 1112
MspR9I CCNGG 3 cut(s) 162, 220, 371
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 4 cut(s) 147, 238, 599, 621
NarI GGCGCC 1 cut(s) 489
NciI CCSGG 2 cut(s) 220, 371
NdeII GATC 2 cut(s) 172, 810
NlaIII CATG 4 cut(s) 354, 947, 1040, 1184
NlaIV GGNNCC 2 cut(s) 490, 1186
NmeAIII GCCGAG 1 cut(s) 443
NmuCI GTSAC 1 cut(s) 802
NspI RCATGY 1 cut(s) 947
NspV TTCGAA 1 cut(s) 84
PagI TCATGA 1 cut(s) 1036
PaqCI CACCTGC 2 cut(s) 52, 275
PceI AGGCCT 1 cut(s) 1209
PciI ACATGT 1 cut(s) 943
PciSI GCTCTTC 2 cut(s) 319, 605
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PfeI GAWTC 4 cut(s) 331, 359, 374, 523
PflFI GACNNNGTC 2 cut(s) 214, 383
PkrI GCNGC 7 cut(s) 49, 121, 488, 601, 623, 824, 1053
PleI GAGTC 3 cut(s) 358, 392, 557
PluTI GGCGCC 1 cut(s) 492
PpsI GAGTC 3 cut(s) 358, 392, 557
PscI ACATGT 1 cut(s) 943
Psp124BI GAGCTC 2 cut(s) 152, 617
Psp6I CCWGG 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 413
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 490, 1186
PspPI GGNCC 2 cut(s) 246, 379
PstNI CAGNNNCTG 1 cut(s) 552
PsuI RGATCY 1 cut(s) 172
PsyI GACNNNGTC 2 cut(s) 214, 383
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 2 cut(s) 446, 948
Rsr2I CGGWCCG 1 cut(s) 379
RsrII CGGWCCG 1 cut(s) 379
SacI GAGCTC 2 cut(s) 152, 617
SapI GCTCTTC 2 cut(s) 319, 605
SaqAI TTAA 3 cut(s) 23, 1077, 1203
SatI GCNGC 7 cut(s) 48, 120, 487, 600, 622, 823, 1052
Sau3AI GATC 2 cut(s) 172, 810
Sau96I GGNCC 2 cut(s) 246, 379
SchI GAGTC 3 cut(s) 358, 393, 558
ScrFI CCNGG 3 cut(s) 162, 220, 371
SduI GDGCHC 2 cut(s) 152, 617
SfcI CTRYAG 1 cut(s) 1215
SfoI GGCGCC 1 cut(s) 490
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 2 cut(s) 246, 379
SmiMI CAYNNNNRTG 2 cut(s) 446, 948
Sse9I AATT 5 cut(s) 80, 323, 507, 1094, 1168
SseBI AGGCCT 1 cut(s) 1209
SsiI CCGC 6 cut(s) 48, 486, 602, 628, 825, 1052
SspDI GGCGCC 1 cut(s) 488
SspMI CTAG 2 cut(s) 528, 1067
SstI GAGCTC 2 cut(s) 152, 617
StuI AGGCCT 1 cut(s) 1209
StyD4I CCNGG 3 cut(s) 160, 218, 369
TaaI ACNGT 3 cut(s) 55, 134, 808
TaqII GACCGA 1 cut(s) 396
TasI AATT 5 cut(s) 80, 323, 507, 1094, 1168
TauI GCSGC 3 cut(s) 50, 489, 1054
TfiI GAWTC 4 cut(s) 331, 359, 374, 523
Tru1I TTAA 3 cut(s) 23, 1077, 1203
Tru9I TTAA 3 cut(s) 23, 1077, 1203
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 4 cut(s) 119, 599, 621, 822
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 4 cut(s) 794, 1026, 1053, 1233
TspGWI ACGGA 3 cut(s) 165, 414, 854
TspRI CASTG 1 cut(s) 595
Tth111I GACNNNGTC 2 cut(s) 214, 383
VpaK11BI GGWCC 2 cut(s) 246, 379
XapI RAATTY 5 cut(s) 80, 323, 507, 1094, 1168
XceI RCATGY 1 cut(s) 947
XspI CTAG 2 cut(s) 528, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.