Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007421

Physical Location & Seq

Genomic Coordinates Reverse (-)

8494697 .. 8497610

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCGGCTTCTTCTTCCTCCTTTGAACAACCTCAAGTCATAACCTGCAACGCGGCGGTGGCATGGCGTGCTGGTGAGCCATTGGTTATGGAGGAAGTTGAAGTGAGTCCACCTCAACCACTTGAGATCAGAATTAAAGTTGTATGTACATCTCTCTGTCGTAGTGATCTCTCTGCTTGGGAATCTCAGTCTCTTTTGCCTCGAATATTTGGCCATGAAGCTGCAGGTATAGTGGAGAGCATTGGAGAAGGTGTAACTGAGTTTGAAAAAGGAGATCATGTGCTTGCTGTATTCACTGGAGAATGTGGGTCATGTCGGCATTGCATATCTGGGAAAAGTAACATGTGTCAGGTTCTTGGAATGGAGAGGAAAGGTTTGATGCATAGTGATCAGAAGACACGCTTCTCCATCAAAGGCAAACCTGTTTACCATTACTGCGCGGTTTCAAGTTTCAGCGAGTACACTGTGGTTCACTCTGGCTGTGCTGTCAAAGTCGATCCACTGGCACCTCTGCATAAAATTTGTCTTCTAAGCTGTGGAGTAGCTGCAGGTCTTGGTGCAGCATGGAATGTTGCTGATGTACAAAAAGGTTCAAGTGTTGTGATATTTGGTCTTGGAACTGTCGGTCTTTCTGTTGCTCAAGGTGCCAAACTTAGAGGAGCAGCTCAAATACTTGGGGTTGATATAAATCCCGCTAAGGCTGAACAAGCAAAGACATTTGGTGTCACGGATTTCATCAATTCAAATGACCTCTCTGAACCTATACCCCAGGTGATCAAAAGAATGACAGGAGGAGGTGCAGATTTCTCATTTGAATGTGTTGGTGATACAGGAATAGCTACAACTGCTTTACAATCGTGCTCGGATGGATGGGGAATGACGGTTACTCTAGGTGTACCGAAAGCTAAGCCTGAAGTTTCAGCTCATTACGGACTTTTCCTTTCTGGGAAATCTTTAAAAGGGACTCTTTTTGGTGGTTGGAAGCCTAAATCTGATCTTCCTTCACTCATTGACAAGTACATGAACAAGGAGATTATGATCGATGAATTTATTACGCATAACCTGTCATTTGATGAAATCAACAAAGCTTTTGTTCTTATGAGAGAAGGAAAATGTTTGCGTTGTGTTCTTCACATGCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

381

Amino Acids

40.72

Weight (kDa)

6.55

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	40 - 165	8e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	208 - 338	2.9e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24760 AT5G24760 AT5G24760 AT5G24760
fragaria_vesca	FvH4_5g18580 FvH4_5g18580 FvH4_5g18580 FvH4_5g18580
malus_domestica	MD06G1241000.v1.1
prunus_persica	Prupe.5G200700_v2.0.a1 Prupe.5G245200_v2.0.a1
pyrus_communis	pycom06g21600 pycom2874g00090
rosa_chinensis	RchiOBHm_Chr7g0176931
rosa_laevigata	RLG00000005571
rosa_multiflora	Rmu_co8388823.1_g000001 Rmu_sc0005310.1_g000042
rosa_roxburghii	Rroxscaffold_3G00276240
rosa_rugosa	Rorug06G0402000 Rorug06G0402100
rosa_samantha	Rh7AG001500 Rh7BG001900 Rh7CG001300 Rh7DG001900
rosa_wichuraiana	Rw7G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	53, 215, 539
AccB1I	GGYRCC	2 cut(s)	505, 644
AccII	CGCG	2 cut(s)	53, 440
AciI	CCGC	4 cut(s)	53, 56, 440, 693
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	519, 1046
AcuI	CTGAAG	1 cut(s)	933
AfaI	GTAC	5 cut(s)	148, 461, 582, 897, 1019
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	7 cut(s)	26, 101, 266, 447, 594, 744, 815
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	8 cut(s)	221, 534, 545, 665, 839, 905, 923, 1088
AluI	AGCT	8 cut(s)	221, 534, 545, 665, 839, 905, 923, 1088
Alw21I	GWGCWC	1 cut(s)	863
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	4 cut(s)	221, 545, 560, 662
ApoI	RAATTY	2 cut(s)	519, 1046
AspLEI	GCGC	1 cut(s)	440
AsuHPI	GGTGA	3 cut(s)	86, 784, 836
BalI	TGGCCA	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	505, 644
BbsI	GAAGAC	2 cut(s)	401, 518
Bbv12I	GWGCWC	1 cut(s)	863
BbvI	GCAGC	4 cut(s)	208, 532, 572, 674
BccI	CCATC	3 cut(s)	416, 860, 864
BciT130I	CCWGG	1 cut(s)	770
BclI	TGATCA	2 cut(s)	388, 774
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	890
BfmI	CTRYAG	2 cut(s)	222, 546
BfuAI	ACCTGC	3 cut(s)	53, 215, 539
BisI	GCNGC	5 cut(s)	54, 222, 546, 561, 663
BlpI	GCTNAGC	1 cut(s)	906
BlsI	GCNGC	5 cut(s)	55, 223, 547, 562, 664
Bme1390I	CCNGG	1 cut(s)	770
BmiI	GGNNCC	2 cut(s)	507, 646
BmrFI	CCNGG	1 cut(s)	770
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	2 cut(s)	401, 518
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu1102I	GCTNAGC	1 cut(s)	906
BpuEI	CTTGAG	3 cut(s)	18, 143, 624
Bsa29I	ATCGAT	1 cut(s)	1041
BsaBI	GATNNNNATC	2 cut(s)	687, 1037
BsaJI	CCNNGG	1 cut(s)	768
BsaXI	ACNNNNNCTCC	4 cut(s)	237, 264, 267, 294
Bse1I	ACTGG	2 cut(s)	301, 507
Bse3DI	GCAATG	1 cut(s)	319
Bse8I	GATNNNNATC	2 cut(s)	687, 1037
BseBI	CCWGG	1 cut(s)	770
BseCI	ATCGAT	1 cut(s)	1041
BseDI	CCNNGG	1 cut(s)	768
BseGI	GGATG	2 cut(s)	871, 875
BseJI	GATNNNNATC	2 cut(s)	687, 1037
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	2 cut(s)	200, 249
BseNI	ACTGG	2 cut(s)	301, 507
BseRI	GAGGAG	2 cut(s)	672, 807
BseXI	GCAGC	4 cut(s)	208, 532, 572, 674
BsgI	GTGCAG	2 cut(s)	579, 819
Bsh1236I	CGCG	2 cut(s)	53, 440
BshFI	GGCC	1 cut(s)	213
BshNI	GGYRCC	2 cut(s)	505, 644
BshVI	ATCGAT	1 cut(s)	1041
BsiHKAI	GWGCWC	1 cut(s)	863
BslFI	GGGAC	1 cut(s)	976
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	976
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp1407I	TGTACA	2 cut(s)	146, 580
Bsp143I	GATC	8 cut(s)	126, 166, 274, 388, 496, 774, 994, 1038
Bsp1720I	GCTNAGC	1 cut(s)	906
BspACI	CCGC	4 cut(s)	53, 56, 440, 693
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	199, 250
BspDI	ATCGAT	1 cut(s)	1041
BspFNI	CGCG	2 cut(s)	53, 440
BspLI	GGNNCC	2 cut(s)	507, 646
BspMAI	CTGCAG	2 cut(s)	226, 550
BspMI	ACCTGC	3 cut(s)	53, 215, 539
BspPI	GGATC	1 cut(s)	491
BspT107I	GGYRCC	2 cut(s)	505, 644
BsrDI	GCAATG	1 cut(s)	319
BsrGI	TGTACA	2 cut(s)	146, 580
BsrI	ACTGG	2 cut(s)	301, 507
BssECI	CCNNGG	1 cut(s)	768
BssMI	GATC	8 cut(s)	126, 166, 274, 388, 496, 774, 994, 1038
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	3 cut(s)	466, 622, 883
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstAUI	TGTACA	2 cut(s)	146, 580
BstC8I	GCNNGC	2 cut(s)	69, 285
BstDEI	CTNAG	6 cut(s)	186, 258, 530, 653, 696, 906
BstF5I	GGATG	2 cut(s)	871, 875
BstFNI	CGCG	2 cut(s)	53, 440
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	8 cut(s)	129, 169, 277, 391, 499, 777, 997, 1041
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	8 cut(s)	126, 166, 274, 388, 496, 774, 994, 1038
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 68, 644, 707, 845
BstNI	CCWGG	1 cut(s)	770
BstNSI	RCATGY	2 cut(s)	346, 1138
BstSCI	CCNGG	1 cut(s)	768
BstSFI	CTRYAG	2 cut(s)	222, 546
BstUI	CGCG	2 cut(s)	53, 440
BstV1I	GCAGC	4 cut(s)	208, 532, 572, 674
BstV2I	GAAGAC	2 cut(s)	401, 518
Bsu15I	ATCGAT	1 cut(s)	1041
BsuRI	GGCC	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	1041
BtsCI	GGATG	2 cut(s)	871, 875
BtsIMutI	CAGTG	3 cut(s)	294, 462, 500
BveI	ACCTGC	3 cut(s)	53, 215, 539
Cac8I	GCNNGC	2 cut(s)	69, 285
CfoI	GCGC	1 cut(s)	440
ClaI	ATCGAT	1 cut(s)	1041
Csp6I	GTAC	5 cut(s)	147, 460, 581, 896, 1018
CviAII	CATG	8 cut(s)	63, 215, 278, 312, 343, 564, 1021, 1135
CviQI	GTAC	5 cut(s)	147, 460, 581, 896, 1018
DdeI	CTNAG	6 cut(s)	186, 258, 530, 653, 696, 906
DpnI	GATC	8 cut(s)	128, 168, 276, 390, 498, 776, 996, 1040
DpnII	GATC	8 cut(s)	126, 166, 274, 388, 496, 774, 994, 1038
DraI	TTTAAA	1 cut(s)	957
EaeI	YGGCCR	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	933
EcoRII	CCWGG	1 cut(s)	768
EcoT22I	ATGCAT	1 cut(s)	384
FaeI	CATG	8 cut(s)	66, 218, 281, 315, 346, 567, 1024, 1138
FalI	AAGNNNNNCTT	4 cut(s)	386, 418, 951, 983
FaqI	GGGAC	1 cut(s)	976
FatI	CATG	8 cut(s)	62, 214, 277, 311, 342, 563, 1020, 1134
FauI	CCCGC	1 cut(s)	700
FbaI	TGATCA	2 cut(s)	388, 774
Fnu4HI	GCNGC	5 cut(s)	54, 222, 546, 561, 663
FokI	GGATG	2 cut(s)	878, 882
Fsp4HI	GCNGC	5 cut(s)	54, 222, 546, 561, 663
FspBI	CTAG	1 cut(s)	890
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	5 cut(s)	54, 222, 546, 561, 663
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	8 cut(s)	66, 218, 281, 315, 346, 567, 1024, 1138
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	1086
HinfI	GANTC	3 cut(s)	106, 182, 964
HphI	GGTGA	3 cut(s)	86, 784, 836
Hpy166II	GTNNAC	5 cut(s)	110, 427, 462, 472, 896
Hpy188I	TCNGA	5 cut(s)	131, 393, 757, 865, 994
Hpy8I	GTNNAC	5 cut(s)	110, 427, 462, 472, 896
HpyAV	CCTTC	3 cut(s)	242, 1011, 1100
HpyCH4III	ACNGT	3 cut(s)	466, 622, 883
HpyCH4V	TGCA	8 cut(s)	48, 224, 324, 382, 514, 548, 560, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 68, 644, 707, 845
HpyF3I	CTNAG	6 cut(s)	186, 258, 530, 653, 696, 906
Hsp92II	CATG	8 cut(s)	66, 218, 281, 315, 346, 567, 1024, 1138
HspAI	GCGC	1 cut(s)	438
Ksp22I	TGATCA	2 cut(s)	388, 774
Kzo9I	GATC	8 cut(s)	126, 166, 274, 388, 496, 774, 994, 1038
LmnI	GCTCC	1 cut(s)	659
Lsp1109I	GCAGC	4 cut(s)	208, 532, 572, 674
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	1 cut(s)	890
MaeIII	GTNAC	4 cut(s)	253, 338, 724, 883
MalI	GATC	8 cut(s)	128, 168, 276, 390, 498, 776, 996, 1040
MboI	GATC	8 cut(s)	126, 166, 274, 388, 496, 774, 994, 1038
MboII	GAAGA	6 cut(s)	3, 6, 406, 518, 989, 1121
MhlI	GDGCHC	1 cut(s)	863
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	4 cut(s)	132, 519, 739, 1046
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	115, 958
MmeI	TCCRAC	1 cut(s)	959
Mox20I	TGGCCA	1 cut(s)	213
Mph1103I	ATGCAT	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	2 cut(s)	135, 956
MslI	CAYNNNNRTG	1 cut(s)	814
Msp20I	TGGCCA	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	770
MvnI	CGCG	2 cut(s)	53, 440
MwoI	GCNNNNNNNGC	5 cut(s)	59, 68, 644, 707, 845
NdeII	GATC	8 cut(s)	126, 166, 274, 388, 496, 774, 994, 1038
NlaIII	CATG	8 cut(s)	66, 218, 281, 315, 346, 567, 1024, 1138
NlaIV	GGNNCC	2 cut(s)	507, 646
NmuCI	GTSAC	1 cut(s)	724
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	2 cut(s)	346, 1138
PciI	ACATGT	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	55, 223, 547, 562, 664
PleI	GAGTC	2 cut(s)	114, 958
PpsI	GAGTC	2 cut(s)	114, 958
PscI	ACATGT	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	768
PspN4I	GGNNCC	2 cut(s)	507, 646
PstI	CTGCAG	2 cut(s)	226, 550
RsaI	GTAC	5 cut(s)	148, 461, 582, 897, 1019
RsaNI	GTAC	5 cut(s)	147, 460, 581, 896, 1018
RseI	CAYNNNNRTG	1 cut(s)	814
SaqAI	TTAA	2 cut(s)	135, 956
SatI	GCNGC	5 cut(s)	54, 222, 546, 561, 663
Sau3AI	GATC	8 cut(s)	126, 166, 274, 388, 496, 774, 994, 1038
SchI	GAGTC	2 cut(s)	115, 958
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	2 cut(s)	222, 546
SmiMI	CAYNNNNRTG	1 cut(s)	814
SmlI	CTYRAG	3 cut(s)	33, 122, 639
SmoI	CTYRAG	3 cut(s)	33, 122, 639
Sse9I	AATT	4 cut(s)	132, 519, 739, 1046
SsiI	CCGC	4 cut(s)	53, 56, 440, 693
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	1 cut(s)	890
StyD4I	CCNGG	1 cut(s)	768
TaaI	ACNGT	3 cut(s)	466, 622, 883
TaqI	TCGA	3 cut(s)	202, 495, 1041
TaqII	GACCGA	1 cut(s)	614
TasI	AATT	4 cut(s)	132, 519, 739, 1046
TatI	WGTACW	4 cut(s)	146, 459, 580, 1017
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	135, 956
Tru9I	TTAA	2 cut(s)	135, 956
TscAI	CASTG	3 cut(s)	301, 469, 507
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	4 cut(s)	221, 545, 560, 662
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	5 cut(s)	231, 724, 1037, 1059, 1089
TspGWI	ACGGA	2 cut(s)	743, 945
TspRI	CASTG	3 cut(s)	301, 469, 507
XapI	RAATTY	2 cut(s)	519, 1046
XceI	RCATGY	2 cut(s)	346, 1138
XspI	CTAG	1 cut(s)	890
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.