Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007421

Physical Location & Seq

Genomic Coordinates Reverse (-)

18356823 .. 18361935

Gene Structure 5113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G245200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCAAATGTCATTGCCTTGCGTAAAACAACCCGATGTCATCACCTGCAAAGCTGCGGTGGCATGGGGAGCTGGAAAGCCTTTGGTGATAGAGGAAGTGAATGTGAATCCACCTCAGGCAATGGAGATAAGGATCAAAGTCGTCTGCACCTCTCTCTGTCGCAGTGACATCACTGCCTGGGAGTCTCAGGCTATTTTTCCTCGAATATTTGGCCATGAAGCAACAGGGATTGTCGAGAGTGTTGGGCAGGGAGTTACTGAGTTTACTGAAGGGGACCATGTGCTAACAGTCTTCATTGGAGAGTGCGGGAAATGCAGGCAATGCACATCAGGTAAAAGCAACATATGTGAAGTACTGGGGCTGGAAAGGAGAGGTGTAATGCACTGTGATCAGAGGACGCGCTTCTCCATAAATGGGGAGCCCATTTATCATTATTGTGCAGTTTCAAGTTTCAGTGAATATACTGTGGTGCACTCGGGATGTGCTGTCAAAATCAGCTCAGTTGTGCCTTTGGAGAAAGTATGCCTTCTCAGTTGTGGAGTAGCTGCAGGCTTGGGTGCAGCTTGGAATGTTGCTGATATATCTAATGGATCAAGTGTGGTGATATTTGGTCTTGGGACCGTAGGCCTTTCTGTTGCACAGGGTGCTAAGCTTAGGGGAGCATCTCAAATAATTGGTGTTGACACTAATCCTGAAAAGGGTGAAAATGCAAAAGCTTTTGGAATTACAGCATTTATCAACCCTCATGACAGCAAAGATCCTATTCAACAGGTTATTAAGAATCTGACAGGTGGAGGGGCTGATTACTCATTTGAATGTATAGGTGACACTGGAATGGTAACTACTGCTTTGCAGGCATGCTGCGATGGATGGGGGTTGACAGTTACACTTGGTGTGCCAAAAGTGAAGCCGGAGGTAACAGCTCATTATGGAATATTTCTTACTGGAAGAACATTGAAGGGATCTCTATTTGGAGGATGGAAACCTAAATCTCATCTCCCTTCATTAGTAGATATGTACACAAAAAAGGAAATCCAAGTCGACGAGTACATAACACATAACCTGCCATTTGAAGATGTCAACAAAGCTTTCAATCTCATGAGAGAAGGGAAGTGTTTGCGTTGTGTCATCCACATGGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

382

Amino Acids

40.85

Weight (kDa)

6.78

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24760 AT5G24760 AT5G24760 AT5G24760
fragaria_vesca	FvH4_5g18580 FvH4_5g18580 FvH4_5g18580 FvH4_5g18580
malus_domestica	MD06G1241000.v1.1
prunus_persica	Prupe.5G200700_v2.0.a1 Prupe.5G245200_v2.0.a1
pyrus_communis	pycom06g21600 pycom2874g00090
rosa_chinensis	RchiOBHm_Chr7g0176931
rosa_laevigata	RLG00000005571
rosa_multiflora	Rmu_co8388823.1_g000001 Rmu_sc0005310.1_g000042
rosa_roxburghii	Rroxscaffold_3G00276240
rosa_rugosa	Rorug06G0402000 Rorug06G0402100
rosa_samantha	Rh7AG001500 Rh7BG001900 Rh7CG001300 Rh7DG001900
rosa_wichuraiana	Rw7G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	53
Acc36I	ACCTGC	2 cut(s)	53, 1071
AccI	GTMKAC	1 cut(s)	1041
AccII	CGCG	1 cut(s)	400
AciI	CCGC	2 cut(s)	56, 306
AclWI	GGATC	4 cut(s)	140, 598, 752, 970
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	288
AdeI	CACNNNGTG	2 cut(s)	644, 893
AfaI	GTAC	3 cut(s)	354, 1019, 1049
AfiI	CCNNNNNNNGG	2 cut(s)	414, 698
AgsI	TTSAA	6 cut(s)	447, 767, 815, 958, 1073, 1093
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	9 cut(s)	53, 71, 498, 545, 563, 652, 716, 923, 1088
AluI	AGCT	9 cut(s)	53, 71, 498, 545, 563, 652, 716, 923, 1088
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	189
Alw44I	GTGCAC	1 cut(s)	470
AlwI	GGATC	4 cut(s)	140, 598, 752, 970
Ama87I	CYCGRG	1 cut(s)	475
AoxI	GGCC	2 cut(s)	211, 625
ApaLI	GTGCAC	1 cut(s)	470
ApeKI	GCWGC	4 cut(s)	53, 545, 560, 861
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	274, 618
AsuHPI	GGTGA	5 cut(s)	34, 97, 613, 713, 836
AvaI	CYCGRG	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	274, 618
AxyI	CCTNAGG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	474
BbvI	GCAGC	4 cut(s)	40, 532, 572, 848
BccI	CCATC	3 cut(s)	860, 864, 972
BciT130I	CCWGG	1 cut(s)	178
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	546
BfuAI	ACCTGC	2 cut(s)	53, 1071
BisI	GCNGC	4 cut(s)	54, 546, 561, 862
BlpI	GCTNAGC	1 cut(s)	648
BlsI	GCNGC	4 cut(s)	55, 547, 562, 863
BmcAI	AGTACT	1 cut(s)	354
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	2 cut(s)	274, 618
BmeT110I	CYCGRG	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	274, 618
BmiI	GGNNCC	3 cut(s)	275, 420, 619
BmrFI	CCNGG	1 cut(s)	178
BmrI	ACTGGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	671
BmuI	ACTGGG	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	653
Bpu1102I	GCTNAGC	1 cut(s)	648
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 698
Bse1I	ACTGG	3 cut(s)	360, 835, 949
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	3 cut(s)	11, 126, 326
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	4 cut(s)	485, 875, 983, 1128
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	414, 698
BseMI	GCAATG	3 cut(s)	11, 126, 326
BseMII	CTCAG	5 cut(s)	128, 200, 249, 513, 544
BseNI	ACTGG	3 cut(s)	360, 835, 949
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	4 cut(s)	40, 532, 572, 848
BsgI	GTGCAG	3 cut(s)	130, 459, 579
Bsh1236I	CGCG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	213, 627
BsiHKAI	GWGCWC	1 cut(s)	474
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	911
BslFI	GGGAC	2 cut(s)	287, 631
BslI	CCNNNNNNNGG	2 cut(s)	414, 698
BsmAI	GTCTC	1 cut(s)	189
BsmFI	GGGAC	2 cut(s)	287, 631
BsnI	GGCC	2 cut(s)	213, 627
BsoBI	CYCGRG	1 cut(s)	475
Bsp1286I	GDGCHC	2 cut(s)	423, 474
Bsp1407I	TGTACA	1 cut(s)	1017
Bsp143I	GATC	5 cut(s)	132, 388, 590, 757, 962
Bsp1720I	GCTNAGC	1 cut(s)	648
BspACI	CCGC	2 cut(s)	56, 306
BspANI	GGCC	2 cut(s)	213, 627
BspCNI	CTCAG	5 cut(s)	127, 199, 250, 512, 543
BspFNI	CGCG	1 cut(s)	400
BspHI	TCATGA	2 cut(s)	745, 1098
BspLI	GGNNCC	3 cut(s)	275, 420, 619
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	2 cut(s)	53, 1071
BspPI	GGATC	4 cut(s)	140, 598, 752, 970
BsrDI	GCAATG	3 cut(s)	11, 126, 326
BsrGI	TGTACA	1 cut(s)	1017
BsrI	ACTGG	3 cut(s)	360, 835, 949
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	5 cut(s)	132, 388, 590, 757, 962
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	5 cut(s)	289, 386, 466, 622, 883
BstAPI	GCANNNNNTGC	2 cut(s)	321, 644
BstAUI	TGTACA	1 cut(s)	1017
BstC8I	GCNNGC	4 cut(s)	317, 550, 855, 859
BstDEI	CTNAG	7 cut(s)	114, 186, 258, 499, 530, 648, 653
BstF5I	GGATG	4 cut(s)	485, 875, 983, 1128
BstFNI	CGCG	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	5 cut(s)	135, 391, 593, 760, 965
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	5 cut(s)	132, 388, 590, 757, 962
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 68, 312, 321, 644, 854
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	861
BstSCI	CCNGG	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	474
BstUI	CGCG	1 cut(s)	400
BstV1I	GCAGC	4 cut(s)	40, 532, 572, 848
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	757, 962
BstYI	RGATCY	2 cut(s)	757, 962
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	213, 627
BtgZI	GCGATG	1 cut(s)	879
BtsCI	GGATG	4 cut(s)	485, 875, 983, 1128
BtsI	GCAGTG	2 cut(s)	169, 171
BtsIMutI	CAGTG	5 cut(s)	169, 171, 382, 460, 828
BveI	ACCTGC	2 cut(s)	53, 1071
Cac8I	GCNNGC	4 cut(s)	317, 550, 855, 859
CciI	TCATGA	2 cut(s)	745, 1098
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	274, 618
CseI	GACGC	1 cut(s)	406
Csp6I	GTAC	3 cut(s)	353, 1018, 1048
CviAII	CATG	7 cut(s)	63, 215, 278, 746, 858, 1099, 1135
CviQI	GTAC	3 cut(s)	353, 1018, 1048
DdeI	CTNAG	7 cut(s)	114, 186, 258, 499, 530, 648, 653
DpnI	GATC	5 cut(s)	134, 390, 592, 759, 964
DpnII	GATC	5 cut(s)	132, 388, 590, 757, 962
DraIII	CACNNNGTG	2 cut(s)	644, 893
EaeI	YGGCCR	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	627
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	274, 618
Eco57I	CTGAAG	1 cut(s)	288
Eco81I	CCTNAGG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	423
FaeI	CATG	7 cut(s)	66, 218, 281, 749, 861, 1102, 1138
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	2 cut(s)	287, 631
FatI	CATG	7 cut(s)	62, 214, 277, 745, 857, 1098, 1134
FauI	CCCGC	1 cut(s)	299
FauNDI	CATATG	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	1041
Fnu4HI	GCNGC	4 cut(s)	54, 546, 561, 862
FokI	GGATG	4 cut(s)	492, 882, 990, 1115
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	4 cut(s)	54, 546, 561, 862
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	4 cut(s)	54, 546, 561, 862
HaeIII	GGCC	2 cut(s)	213, 627
HapII	CCGG	1 cut(s)	911
HgaI	GACGC	1 cut(s)	406
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	7 cut(s)	66, 218, 281, 749, 861, 1102, 1138
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HincII	GTYRAC	4 cut(s)	682, 879, 1042, 1081
HindII	GTYRAC	4 cut(s)	682, 879, 1042, 1081
HindIII	AAGCTT	3 cut(s)	650, 714, 1086
HinfI	GANTC	3 cut(s)	106, 182, 781
HpaII	CCGG	1 cut(s)	911
HphI	GGTGA	5 cut(s)	34, 97, 613, 713, 836
Hpy166II	GTNNAC	7 cut(s)	264, 472, 682, 879, 1020, 1042, 1081
Hpy188I	TCNGA	2 cut(s)	393, 786
Hpy188III	TCNNGA	5 cut(s)	235, 477, 692, 746, 1099
Hpy8I	GTNNAC	7 cut(s)	264, 472, 682, 879, 1020, 1042, 1081
Hpy99I	CGWCG	1 cut(s)	1046
HpyAV	CCTTC	5 cut(s)	263, 536, 952, 1011, 1100
HpyCH4III	ACNGT	5 cut(s)	289, 386, 466, 622, 883
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 68, 312, 321, 644, 854
HpyF3I	CTNAG	7 cut(s)	114, 186, 258, 499, 530, 648, 653
Hsp92II	CATG	7 cut(s)	66, 218, 281, 749, 861, 1102, 1138
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	132, 388, 590, 757, 962
LmnI	GCTCC	3 cut(s)	68, 418, 659
Lsp1109I	GCAGC	4 cut(s)	40, 532, 572, 848
LweI	GCATC	1 cut(s)	671
MaeIII	GTNAC	6 cut(s)	164, 253, 824, 838, 883, 916
MalI	GATC	5 cut(s)	134, 390, 592, 759, 964
MboI	GATC	5 cut(s)	132, 388, 590, 757, 962
MboII	GAAGA	3 cut(s)	283, 960, 1085
MflI	RGATCY	2 cut(s)	757, 962
MhlI	GDGCHC	2 cut(s)	423, 474
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	2 cut(s)	672, 723
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	191
Mox20I	TGGCCA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	1 cut(s)	777
MslI	CAYNNNNRTG	4 cut(s)	435, 814, 833, 1133
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	1 cut(s)	911
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	400
MwoI	GCNNNNNNNGC	6 cut(s)	59, 68, 312, 321, 644, 854
NdeI	CATATG	1 cut(s)	344
NdeII	GATC	5 cut(s)	132, 388, 590, 757, 962
NlaIII	CATG	7 cut(s)	66, 218, 281, 749, 861, 1102, 1138
NlaIV	GGNNCC	3 cut(s)	275, 420, 619
NmuCI	GTSAC	2 cut(s)	164, 824
NspI	RCATGY	1 cut(s)	861
PaeI	GCATGC	1 cut(s)	861
PagI	TCATGA	2 cut(s)	745, 1098
PaqCI	CACCTGC	1 cut(s)	53
PceI	AGGCCT	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	106, 781
PkrI	GCNGC	4 cut(s)	55, 547, 562, 863
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	3 cut(s)	275, 420, 619
PspPI	GGNCC	2 cut(s)	274, 618
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	757, 962
RsaI	GTAC	3 cut(s)	354, 1019, 1049
RsaNI	GTAC	3 cut(s)	353, 1018, 1048
RseI	CAYNNNNRTG	4 cut(s)	435, 814, 833, 1133
SalI	GTCGAC	1 cut(s)	1040
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	4 cut(s)	54, 546, 561, 862
Sau3AI	GATC	5 cut(s)	132, 388, 590, 757, 962
Sau96I	GGNCC	2 cut(s)	274, 618
ScaI	AGTACT	1 cut(s)	354
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	423, 474
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	274, 618
SmiMI	CAYNNNNRTG	4 cut(s)	435, 814, 833, 1133
SphI	GCATGC	1 cut(s)	861
Sse9I	AATT	2 cut(s)	672, 723
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	2 cut(s)	56, 306
SspI	AATATT	2 cut(s)	207, 936
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	5 cut(s)	289, 386, 466, 622, 883
TaqI	TCGA	3 cut(s)	202, 234, 1041
TasI	AATT	2 cut(s)	672, 723
TatI	WGTACW	3 cut(s)	352, 1017, 1047
TfiI	GAWTC	2 cut(s)	106, 781
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	5 cut(s)	169, 178, 389, 460, 835
TseFI	GTSAC	2 cut(s)	164, 824
TseI	GCWGC	4 cut(s)	53, 545, 560, 861
Tsp45I	GTSAC	2 cut(s)	164, 824
TspDTI	ATGAA	3 cut(s)	231, 283, 993
TspRI	CASTG	5 cut(s)	169, 178, 389, 460, 835
VneI	GTGCAC	1 cut(s)	470
VpaK11BI	GGWCC	2 cut(s)	274, 618
XceI	RCATGY	1 cut(s)	861
XmiI	GTMKAC	1 cut(s)	1041
ZrmI	AGTACT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.