Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8388823.1

Orthogroup ID

OG0007421

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1206

Gene Structure 1205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8388823.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 514 bp

gcttgggtgctgcttggaatgttgctgatatatctaatggatcaagtgtggtgatatttggtctcggaaccgtaggcctctctgttgcacagggtgctaagcttaggggcgcatcagcaataattggtgttgacactaatcctgaaaaggaagaaaaagcaaaagcttttggaattaccgaatttattaaccccaatgacagtaaacaacctgttcaacaggttattaagcatctcacaggtggaggggcagattacgcatttgaatgtataggtgacacaggaatggtaactactgcattgcaggcatgttgcgatggatggggattgactgtgacgcttggtgtgccaaaagtaaaaccagaagtatctgctcattatggaatatttctaactggaagaacattgaaagggtctctttttggaggatggaaacctaaatctgatctcccttcgttagttgacatgtacataaaaaaggaaatccaagttgatgagtacataacacataacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

171

Amino Acids

18.04

Weight (kDa)

5.91

Isoelectric Point (pI)

25.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24760 AT5G24760 AT5G24760 AT5G24760
fragaria_vesca	FvH4_5g18580 FvH4_5g18580 FvH4_5g18580 FvH4_5g18580
malus_domestica	MD06G1241000.v1.1
prunus_persica	Prupe.5G200700_v2.0.a1 Prupe.5G245200_v2.0.a1
pyrus_communis	pycom06g21600 pycom2874g00090
rosa_chinensis	RchiOBHm_Chr7g0176931
rosa_laevigata	RLG00000005571
rosa_multiflora	Rmu_co8388823.1_g000001 Rmu_sc0005310.1_g000042
rosa_roxburghii	Rroxscaffold_3G00276240
rosa_rugosa	Rorug06G0402000 Rorug06G0402100
rosa_samantha	Rh7AG001500 Rh7BG001900 Rh7CG001300 Rh7DG001900
rosa_wichuraiana	Rw7G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	181
AdeI	CACNNNGTG	1 cut(s)	94
AfaI	GTAC	2 cut(s)	469, 499
AflIII	ACRYGT	1 cut(s)	464
AgsI	TTSAA	3 cut(s)	217, 265, 408
AluBI	AGCT	2 cut(s)	102, 166
AluI	AGCT	2 cut(s)	102, 166
Alw26I	GTCTC	2 cut(s)	67, 419
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	63, 286
BccI	CCATC	3 cut(s)	310, 314, 422
BcoDI	GTCTC	2 cut(s)	67, 419
BisI	GCNGC	1 cut(s)	11
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	69
BmsI	GCATC	2 cut(s)	121, 240
Bpu10I	CCTNAGC	1 cut(s)	103
Bpu1102I	GCTNAGC	1 cut(s)	98
BsaI	GGTCTC	2 cut(s)	67, 419
Bse1I	ACTGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	298
BseGI	GGATG	2 cut(s)	325, 433
BseMI	GCAATG	1 cut(s)	298
BseNI	ACTGG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	67, 419
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	2 cut(s)	67, 419
Bsp1407I	TGTACA	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	40, 444
Bsp1720I	GCTNAGC	1 cut(s)	98
BspANI	GGCC	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	2 cut(s)	67, 419
BsrDI	GCAATG	1 cut(s)	298
BsrGI	TGTACA	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	399
BssMI	GATC	2 cut(s)	40, 444
Bst4CI	ACNGT	3 cut(s)	72, 202, 333
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	2 cut(s)	98, 103
BstF5I	GGATG	2 cut(s)	325, 433
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	2 cut(s)	43, 447
BstMAI	GTCTC	2 cut(s)	67, 419
BstMBI	GATC	2 cut(s)	40, 444
BstMWI	GCNNNNNNNGC	4 cut(s)	94, 256, 304, 345
BstNSI	RCATGY	2 cut(s)	311, 468
BsuRI	GGCC	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	325, 433
Cac8I	GCNNGC	1 cut(s)	305
CfoI	GCGC	1 cut(s)	112
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	468, 498
CviAII	CATG	2 cut(s)	308, 465
CviJI	RGCY	3 cut(s)	77, 102, 166
CviKI_1	RGCY	3 cut(s)	77, 102, 166
CviQI	GTAC	2 cut(s)	468, 498
DdeI	CTNAG	2 cut(s)	98, 103
DpnI	GATC	2 cut(s)	42, 446
DpnII	GATC	2 cut(s)	40, 444
DraIII	CACNNNGTG	1 cut(s)	94
Eco147I	AGGCCT	1 cut(s)	77
Eco31I	GGTCTC	2 cut(s)	67, 419
FaeI	CATG	2 cut(s)	311, 468
FaiI	YATR	8 cut(s)	31, 271, 309, 380, 466, 472, 502, 509
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	2 cut(s)	307, 464
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	2 cut(s)	332, 440
Fsp4HI	GCNGC	1 cut(s)	11
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	77
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	311, 468
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	132, 462
HindII	GTYRAC	2 cut(s)	132, 462
HindIII	AAGCTT	2 cut(s)	100, 164
HphI	GGTGA	2 cut(s)	63, 286
Hpy166II	GTNNAC	3 cut(s)	132, 205, 462
Hpy188I	TCNGA	2 cut(s)	67, 444
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	3 cut(s)	132, 205, 462
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	3 cut(s)	72, 202, 333
HpyCH4V	TGCA	3 cut(s)	88, 298, 303
HpyF10VI	GCNNNNNNNGC	4 cut(s)	94, 256, 304, 345
HpyF3I	CTNAG	2 cut(s)	98, 103
Hsp92II	CATG	2 cut(s)	311, 468
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	40, 444
LpnPI	CCDG	9 cut(s)	76, 155, 205, 224, 224, 266, 289, 374, 380
LweI	GCATC	2 cut(s)	121, 240
MaeIII	GTNAC	3 cut(s)	274, 288, 333
MalI	GATC	2 cut(s)	42, 446
MboI	GATC	2 cut(s)	40, 444
MboII	GAAGA	2 cut(s)	163, 410
MluCI	AATT	3 cut(s)	122, 173, 181
MnlI	CCTC	3 cut(s)	88, 238, 418
MseI	TTAA	2 cut(s)	188, 227
MslI	CAYNNNNRTG	2 cut(s)	264, 283
MwoI	GCNNNNNNNGC	4 cut(s)	94, 256, 304, 345
NdeII	GATC	2 cut(s)	40, 444
NlaIII	CATG	2 cut(s)	311, 468
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	274, 333
NspI	RCATGY	2 cut(s)	311, 468
PceI	AGGCCT	1 cut(s)	77
PciI	ACATGT	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	69
RsaI	GTAC	2 cut(s)	469, 499
RsaNI	GTAC	2 cut(s)	468, 498
RseI	CAYNNNNRTG	2 cut(s)	264, 283
SaqAI	TTAA	2 cut(s)	188, 227
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	40, 444
SetI	ASST	7 cut(s)	104, 168, 213, 224, 243, 276, 438
SfaNI	GCATC	2 cut(s)	121, 240
SmiMI	CAYNNNNRTG	2 cut(s)	264, 283
Sse9I	AATT	3 cut(s)	122, 173, 181
SseBI	AGGCCT	1 cut(s)	77
SspI	AATATT	1 cut(s)	386
StuI	AGGCCT	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	72, 202, 333
TasI	AATT	3 cut(s)	122, 173, 181
TatI	WGTACW	2 cut(s)	467, 497
Tru1I	TTAA	2 cut(s)	188, 227
Tru9I	TTAA	2 cut(s)	188, 227
TseFI	GTSAC	2 cut(s)	274, 333
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	2 cut(s)	274, 333
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	2 cut(s)	311, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.