Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007421

Physical Location & Seq

Genomic Coordinates Reverse (-)

37056775 .. 37060079

Gene Structure 3305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1241000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCTTTGCCTACTTCCACTTCCATAGAACAACCACAACCCCGTGTCCATGATGTCGATGTCGATGTCATCACCTGCAAAGCCGCGGTGGCATGGGGAGCTGGACAGCCTTTGGTGATAGAGCAAGTGAATGTGAGTCCACCTCAGCCAATGGAGATAAGGATCAAAGTTGTATGCACCTCTCTCTGTCGCAGCGACCTCTCTGCCTGGGAGTCTCAGACTATCTTTCCTCGGATATTTGGTCACGAAGCAACAGGGATTGTCGAGAGTGTTGGTGAGGGGGTGACTGAATTTACTCAAGGTGACCATGTGCTAACAGTGTTCATTGGAGAATGCGGGAAATGCAGGCAATGTGCATCAGGTAAAACCAACATTTGTCAACTCCTGGGGCTCGAAAGGAGAGGCTTAATGCACTGCGATCAGAGGACACGCTTCTCTATAAATGCCACCGGGGAACCCGTTTACCATTATTGTGCAGTTTCAAGTTTTAGTGAATATACTGTGGTGCACTCAGGATGTGCTGTCAAAATCAGCTCACTTGTGCCTATGGAGAAAGTATGCCTTCTCAGTTGTGGAGTAGCTGCAGGCTTGGGTGCAGCTTGGAATGTTGCTGATATATCTGATGGATCAAGTGTGGTGATATTTGGTCTTGGGACAGTAGGCCTTTCTGTTGCACAGGGTGCAAACCTTAGGGGAGCATCTCAAATAATTGGTGTTGATACTAATCCTGAAAAGGGTGAAAATGCCAAAGCTTTTGGAATTACAGAATTTATCAACCCAAATGACAGCAAAGAACCTATTCAACAGGTTATTAAGCATTTGACAGGCGGAGGAGCAGATTACTCATTTGAATGTATAGGTGACACTGGCATGGTAACTACTGCATTGCAGGCATGTTGTGATGGATGGGGTTTGACAGTTACACTTGGTGTGCCAAAAGTGAAGCCCGAAATAACAGCTCATTATGGAGCATTTCTTACCGGAAGAACATTGAAGGGGTCGCTATTTGGAGGATGGAAACCTAAATCTGATCTCCCTTCCTTAGTAGAAATGTACACGAAAAAGGAAATCCAAGTTGATGAGTACATAACACATAACCTGCCATTTGAAGATGTGAACAAAGCTTTCAATCTCATGCGAGAAGGCAAGTGTTTGCGTTGTGTCATCCACATGGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

394

Amino Acids

42.2

Weight (kDa)

5.61

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	50 - 177	2.6e-20	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	220 - 351	1.4e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24760 AT5G24760 AT5G24760 AT5G24760
fragaria_vesca	FvH4_5g18580 FvH4_5g18580 FvH4_5g18580 FvH4_5g18580
malus_domestica	MD06G1241000.v1.1
prunus_persica	Prupe.5G200700_v2.0.a1 Prupe.5G245200_v2.0.a1
pyrus_communis	pycom06g21600 pycom2874g00090
rosa_chinensis	RchiOBHm_Chr7g0176931
rosa_laevigata	RLG00000005571
rosa_multiflora	Rmu_co8388823.1_g000001 Rmu_sc0005310.1_g000042
rosa_roxburghii	Rroxscaffold_3G00276240
rosa_rugosa	Rorug06G0402000 Rorug06G0402100
rosa_samantha	Rh7AG001500 Rh7BG001900 Rh7CG001300 Rh7DG001900
rosa_wichuraiana	Rw7G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	2 cut(s)	83, 1107
AccII	CGCG	1 cut(s)	86
AciI	CCGC	4 cut(s)	84, 86, 336, 828
AclWI	GGATC	2 cut(s)	170, 634
AcsI	RAATTY	2 cut(s)	290, 767
AdeI	CACNNNGTG	2 cut(s)	680, 929
AfaI	GTAC	2 cut(s)	1055, 1085
AfiI	CCNNNNNNNGG	1 cut(s)	734
AgsI	TTSAA	6 cut(s)	483, 803, 851, 994, 1109, 1129
AjnI	CCWGG	2 cut(s)	206, 384
AluBI	AGCT	7 cut(s)	101, 534, 581, 599, 752, 959, 1124
AluI	AGCT	7 cut(s)	101, 534, 581, 599, 752, 959, 1124
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	219
Alw44I	GTGCAC	1 cut(s)	506
AlwI	GGATC	2 cut(s)	170, 634
AoxI	GGCC	1 cut(s)	661
ApaLI	GTGCAC	1 cut(s)	506
ApeKI	GCWGC	3 cut(s)	192, 581, 596
ApoI	RAATTY	2 cut(s)	290, 767
Asp700I	GAANNNNTTC	1 cut(s)	798
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	8 cut(s)	64, 127, 287, 295, 314, 649, 749, 872
AxyI	CCTNAGG	1 cut(s)	689
BaeGI	GKGCMC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	510
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	204, 568, 608
BccI	CCATC	4 cut(s)	617, 896, 900, 1008
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	2 cut(s)	208, 386
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	1180
BfmI	CTRYAG	1 cut(s)	582
BfuAI	ACCTGC	2 cut(s)	83, 1107
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	4 cut(s)	84, 193, 582, 597
BlsI	GCNGC	4 cut(s)	85, 194, 583, 598
Bme1390I	CCNGG	3 cut(s)	208, 386, 451
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	3 cut(s)	208, 386, 451
BmsI	GCATC	2 cut(s)	365, 707
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	451
BsaBI	GATNNNNATC	2 cut(s)	161, 723
BsaJI	CCNNGG	5 cut(s)	84, 207, 230, 385, 450
BsaWI	WCCGGW	1 cut(s)	980
Bsc4I	CCNNNNNNNGG	1 cut(s)	734
Bse1I	ACTGG	1 cut(s)	871
Bse21I	CCTNAGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	356, 884
Bse8I	GATNNNNATC	2 cut(s)	161, 723
BseBI	CCWGG	2 cut(s)	208, 386
BseDI	CCNNGG	5 cut(s)	84, 207, 230, 385, 450
BseGI	GGATG	4 cut(s)	521, 911, 1019, 1164
BseJI	GATNNNNATC	2 cut(s)	161, 723
BseLI	CCNNNNNNNGG	1 cut(s)	734
BseMI	GCAATG	2 cut(s)	356, 884
BseMII	CTCAG	4 cut(s)	158, 230, 525, 580
BseNI	ACTGG	1 cut(s)	871
BseRI	GAGGAG	1 cut(s)	846
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	204, 568, 608
BsgI	GTGCAG	2 cut(s)	495, 615
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	663
BsiHKAI	GWGCWC	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	450, 981
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	1 cut(s)	734
BsmAI	GTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	663
Bsp1286I	GDGCHC	2 cut(s)	393, 510
Bsp1407I	TGTACA	1 cut(s)	1053
Bsp143I	GATC	4 cut(s)	162, 418, 626, 1030
BspACI	CCGC	4 cut(s)	84, 86, 336, 828
BspANI	GGCC	1 cut(s)	663
BspCNI	CTCAG	4 cut(s)	157, 229, 524, 579
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	456
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	2 cut(s)	83, 1107
BspPI	GGATC	2 cut(s)	170, 634
BsrDI	GCAATG	2 cut(s)	356, 884
BsrGI	TGTACA	1 cut(s)	1053
BsrI	ACTGG	1 cut(s)	871
BssECI	CCNNGG	5 cut(s)	84, 207, 230, 385, 450
BssMI	GATC	4 cut(s)	162, 418, 626, 1030
Bst2UI	CCWGG	2 cut(s)	208, 386
Bst4CI	ACNGT	4 cut(s)	319, 502, 658, 919
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	1053
BstC8I	GCNNGC	3 cut(s)	347, 586, 891
BstDEI	CTNAG	6 cut(s)	144, 216, 511, 566, 689, 1042
BstDSI	CCRYGG	1 cut(s)	84
BstEII	GGTNACC	1 cut(s)	302
BstF5I	GGATG	4 cut(s)	521, 911, 1019, 1164
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	4 cut(s)	165, 421, 629, 1033
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	4 cut(s)	162, 418, 626, 1030
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 98, 342, 680, 890
BstNI	CCWGG	2 cut(s)	208, 386
BstNSI	RCATGY	1 cut(s)	897
BstPI	GGTNACC	1 cut(s)	302
BstSCI	CCNGG	3 cut(s)	206, 384, 449
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	510
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	204, 568, 608
Bsu36I	CCTNAGG	1 cut(s)	689
BsuRI	GGCC	1 cut(s)	663
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	4 cut(s)	521, 911, 1019, 1164
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	3 cut(s)	324, 412, 864
BveI	ACCTGC	2 cut(s)	83, 1107
Cac8I	GCNNGC	3 cut(s)	347, 586, 891
Cfr42I	CCGCGG	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	1054, 1084
CviAII	CATG	7 cut(s)	50, 93, 308, 871, 894, 1135, 1171
CviQI	GTAC	2 cut(s)	1054, 1084
DdeI	CTNAG	6 cut(s)	144, 216, 511, 566, 689, 1042
DpnI	GATC	4 cut(s)	164, 420, 628, 1032
DpnII	GATC	4 cut(s)	162, 418, 626, 1030
DraIII	CACNNNGTG	2 cut(s)	680, 929
EciI	GGCGGA	1 cut(s)	843
Eco147I	AGGCCT	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	393
Eco81I	CCTNAGG	1 cut(s)	689
Eco91I	GGTNACC	1 cut(s)	302
EcoO65I	GGTNACC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	206, 384
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	7 cut(s)	53, 96, 311, 874, 897, 1138, 1174
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	7 cut(s)	49, 92, 307, 870, 893, 1134, 1170
FauI	CCCGC	1 cut(s)	329
Fnu4HI	GCNGC	4 cut(s)	84, 193, 582, 597
FokI	GGATG	4 cut(s)	528, 918, 1026, 1151
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	4 cut(s)	84, 193, 582, 597
FspBI	CTAG	1 cut(s)	1180
GluI	GCNGC	4 cut(s)	84, 193, 582, 597
HaeIII	GGCC	1 cut(s)	663
HapII	CCGG	2 cut(s)	450, 981
Hin1II	CATG	7 cut(s)	53, 96, 311, 874, 897, 1138, 1174
HincII	GTYRAC	1 cut(s)	380
HindII	GTYRAC	1 cut(s)	380
HindIII	AAGCTT	2 cut(s)	750, 1122
HinfI	GANTC	2 cut(s)	136, 212
HpaII	CCGG	2 cut(s)	450, 981
HphI	GGTGA	8 cut(s)	64, 127, 287, 295, 314, 649, 749, 872
Hpy166II	GTNNAC	6 cut(s)	140, 380, 463, 508, 1056, 1117
Hpy188I	TCNGA	5 cut(s)	219, 234, 423, 622, 1030
Hpy188III	TCNNGA	4 cut(s)	245, 265, 513, 728
Hpy8I	GTNNAC	6 cut(s)	140, 380, 463, 508, 1056, 1117
HpyAV	CCTTC	4 cut(s)	572, 988, 1047, 1136
HpyCH4III	ACNGT	4 cut(s)	319, 502, 658, 919
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 98, 342, 680, 890
HpyF3I	CTNAG	6 cut(s)	144, 216, 511, 566, 689, 1042
Hsp92II	CATG	7 cut(s)	53, 96, 311, 874, 897, 1138, 1174
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	162, 418, 626, 1030
LmnI	GCTCC	4 cut(s)	98, 695, 833, 968
Lsp1109I	GCAGC	3 cut(s)	204, 568, 608
LweI	GCATC	2 cut(s)	365, 707
MaeI	CTAG	1 cut(s)	1180
MaeIII	GTNAC	6 cut(s)	242, 283, 302, 860, 874, 919
MalI	GATC	4 cut(s)	164, 420, 628, 1032
MboI	GATC	4 cut(s)	162, 418, 626, 1030
MboII	GAAGA	2 cut(s)	996, 1121
MhlI	GDGCHC	2 cut(s)	393, 510
MluCI	AATT	4 cut(s)	290, 708, 759, 767
MlyI	GAGTC	2 cut(s)	145, 221
MnlI	CCTC	9 cut(s)	153, 190, 209, 240, 271, 395, 417, 824, 1004
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	2 cut(s)	407, 813
MslI	CAYNNNNRTG	4 cut(s)	471, 850, 869, 1169
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	2 cut(s)	450, 981
MspR9I	CCNGG	3 cut(s)	208, 386, 451
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	2 cut(s)	208, 386
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	5 cut(s)	89, 98, 342, 680, 890
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	4 cut(s)	162, 418, 626, 1030
NlaIII	CATG	7 cut(s)	53, 96, 311, 874, 897, 1138, 1174
NlaIV	GGNNCC	1 cut(s)	456
NmuCI	GTSAC	4 cut(s)	242, 283, 302, 860
NspI	RCATGY	1 cut(s)	897
PaqCI	CACCTGC	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	798
PkrI	GCNGC	4 cut(s)	85, 194, 583, 598
PleI	GAGTC	2 cut(s)	144, 220
PpsI	GAGTC	2 cut(s)	144, 220
Psp6I	CCWGG	2 cut(s)	206, 384
PspEI	GGTNACC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	206, 384
PspN4I	GGNNCC	1 cut(s)	456
PstI	CTGCAG	1 cut(s)	586
RsaI	GTAC	2 cut(s)	1055, 1085
RsaNI	GTAC	2 cut(s)	1054, 1084
RseI	CAYNNNNRTG	4 cut(s)	471, 850, 869, 1169
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	407, 813
SatI	GCNGC	4 cut(s)	84, 193, 582, 597
Sau3AI	GATC	4 cut(s)	162, 418, 626, 1030
SchI	GAGTC	2 cut(s)	145, 221
ScrFI	CCNGG	3 cut(s)	208, 386, 451
SduI	GDGCHC	2 cut(s)	393, 510
SfaNI	GCATC	2 cut(s)	365, 707
SfcI	CTRYAG	1 cut(s)	582
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	4 cut(s)	471, 850, 869, 1169
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	4 cut(s)	290, 708, 759, 767
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	4 cut(s)	84, 86, 336, 828
SspMI	CTAG	1 cut(s)	1180
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	3 cut(s)	206, 384, 449
TaaI	ACNGT	4 cut(s)	319, 502, 658, 919
TaqI	TCGA	4 cut(s)	57, 63, 264, 393
TasI	AATT	4 cut(s)	290, 708, 759, 767
TatI	WGTACW	2 cut(s)	1053, 1083
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	407, 813
Tru9I	TTAA	2 cut(s)	407, 813
TscAI	CASTG	3 cut(s)	324, 419, 871
TseFI	GTSAC	4 cut(s)	242, 283, 302, 860
TseI	GCWGC	3 cut(s)	192, 581, 596
Tsp45I	GTSAC	4 cut(s)	242, 283, 302, 860
TspDTI	ATGAA	1 cut(s)	313
TspRI	CASTG	3 cut(s)	324, 419, 871
VneI	GTGCAC	1 cut(s)	506
XapI	RAATTY	2 cut(s)	290, 767
XceI	RCATGY	1 cut(s)	897
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	1 cut(s)	1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.