Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007421

Physical Location & Seq

Genomic Coordinates Forward (+)

54663845 .. 54665296

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0402000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGAATATCATTCATAAGACAAGATAAACCTAATTTCAAGCCAAAGAAAACGTCATTGCCCGAACAATTATTCATAAAAGAGCGAAGTAAATCAACAAAAACTTCTGCATTAGGGTTTAATGTTTATCGAACCCGCTCGGAACTCTGGTTCTCGGAGCTCAGGGAATTCAGGCATTTGGTCCCCAGATCCATTAAACTCCGGATTTCCAGTGACCCAAGGCTTGATCAACTAAGGTGGAAGCTTGGAGATTTCTTAAGTGTGGATTCCAGGTGGTGGGGGTGGGGGACTCACTTACGCCTCGCTACAGCTTTCTCCCATATTTTCATTTTAGCATTGCATGACTATTTGCATATCATTGAATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

122

Amino Acids

14.64

Weight (kDa)

10.38

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24760 AT5G24760 AT5G24760 AT5G24760
fragaria_vesca	FvH4_5g18580 FvH4_5g18580 FvH4_5g18580 FvH4_5g18580
malus_domestica	MD06G1241000.v1.1
prunus_persica	Prupe.5G200700_v2.0.a1 Prupe.5G245200_v2.0.a1
pyrus_communis	pycom06g21600 pycom2874g00090
rosa_chinensis	RchiOBHm_Chr7g0176931
rosa_laevigata	RLG00000005571
rosa_multiflora	Rmu_co8388823.1_g000001 Rmu_sc0005310.1_g000042
rosa_roxburghii	Rroxscaffold_3G00276240
rosa_rugosa	Rorug06G0402000 Rorug06G0402100
rosa_samantha	Rh7AG001500 Rh7BG001900 Rh7CG001300 Rh7DG001900
rosa_wichuraiana	Rw7G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccBSI	CCGCTC	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	201
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflII	CTTAAG	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	40, 362
AjnI	CCWGG	1 cut(s)	269
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	3 cut(s)	160, 244, 311
AluI	AGCT	3 cut(s)	160, 244, 311
Alw21I	GWGCWC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	183
Aor13HI	TCCGGA	1 cut(s)	201
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	38, 70
AspS9I	GGNCC	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	271
BclI	TGATCA	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	306
BfrI	CTTAAG	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	271
Bpu10I	CCTNAGC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	2 cut(s)	56, 335
BseAI	TCCGGA	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMI	GCAATG	2 cut(s)	56, 335
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	2 cut(s)	167, 301
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	167, 301
BsmI	GAATGC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	188, 226
BspACI	CCGC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	183
BspTI	CTTAAG	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	56, 335
BsrI	ACTGG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	188, 226
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	271
BstAFI	CTTAAG	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	161, 233
BstKTI	GATC	2 cut(s)	191, 229
BstMBI	GATC	2 cut(s)	188, 226
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	218, 253
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	5 cut(s)	43, 160, 223, 244, 311
CviKI_1	RGCY	5 cut(s)	43, 160, 223, 244, 311
DdeI	CTNAG	2 cut(s)	161, 233
DpnI	GATC	2 cut(s)	190, 228
DpnII	GATC	2 cut(s)	188, 226
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	1 cut(s)	344
FaiI	YATR	5 cut(s)	17, 77, 321, 342, 354
FaqI	GGGAC	2 cut(s)	167, 301
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	226
FriOI	GRGCYC	1 cut(s)	162
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	1 cut(s)	344
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	2 cut(s)	266, 289
HpaII	CCGG	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	142, 157
Hpy188III	TCNNGA	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	110, 340, 352
HpyF3I	CTNAG	2 cut(s)	161, 233
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	344
Kpn2I	TCCGGA	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	188, 226
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	8 cut(s)	133, 148, 157, 199, 215, 223, 256, 283
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	190, 228
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	188, 226
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	3 cut(s)	34, 68, 167
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	1 cut(s)	311
MroI	TCCGGA	1 cut(s)	201
MseI	TTAA	3 cut(s)	120, 195, 257
MspCI	CTTAAG	1 cut(s)	256
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	188, 226
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	276
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	120, 195, 257
Sau3AI	GATC	2 cut(s)	188, 226
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	7 cut(s)	34, 56, 162, 239, 246, 275, 313
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	3 cut(s)	34, 68, 167
SsiI	CCGC	1 cut(s)	136
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	218
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	130
TasI	AATT	3 cut(s)	34, 68, 167
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	3 cut(s)	120, 195, 257
Tru9I	TTAA	3 cut(s)	120, 195, 257
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	4, 64, 316
TspRI	CASTG	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	256
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.