Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007421

Physical Location & Seq

Genomic Coordinates Reverse (-)

24177425 .. 24180291

Gene Structure 2867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21600.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTCTTTGCCTTCTTCCACTTCCATAGAACAACCACAACCCCGTGTCCATGATGTCGATGTCATCACCTGCAAAGCCGCGGTGGCATGGGGAGCTGGACAGCCTTTGGTGATAGAGCAAGTGAATGTGAGTCCACCTCAGCCAATGGAGATATGGATCAAAGTTGTATGCACCTCTCTCTGTCGCAGCGACCTCTCTGCCTGGGAGTCTCAGACTATCTTTCCTCGGATATTTGGTCACGAAGCAACAGGGATTGTCGAGAGTGTTGGCGAGGGGGTGACTGAATTTACTCAAGGGGACCATGTGCTAACAGTGTTCATTGGAGAATGCGGGAAATGCAGGCAATGTGAATCAGGTAAAACCAACATTTGTCAACTCCTGGGGCTCGAAAGGAGAGGATTAATGCACTGCGATCAGAGGACACGCTTCTCTATAAATGCCACTGGGGAACCCGTTTACCATTATTGTGCAGTTTCAAGTTTTAGTGAATATACTGTGGTGCACTCAGGATGTGCTGTCAAAATCAGCTCACTTGTGCCTCTGGAGAAAGTATGCCTTCTCAGTTGTGGAGTAGCTGCAGGCTTGGGTGCAGCTTGGAATGTTGCTGATATATCTGATGGATCAAGTGTGGTGATATTCGGTCTTGGGACAGTAGGCCTTTCCGTTGCACAGGGTGCAAACCTTAGGGGAGCATCTCAAATAATTGGTGTTGATACTAATCCTGAAAAGGGTGAAAATGCCAAAGCTTTTGGAATTACAGAATTTATCAACCCAAATGACAGCAAAGAACCTATTCAACAGGTTATTAAGCATTTGACAGGCGGAGGAGCAGATTACTCATTTGAATGTATAGGTGACACTGGCATGGTAACTACTGCATTGCAGGCATGTTGTGATGGATGGGGTTTGACAGTTACACTTGGTGTGCCAAAAGTGAAGCCCGAAATAACAGCTCATTATGGAGCATTTCTTACTGGAAGAACATTGAAGGGATCGCTATTTGGAGGATGGAAACCTAGATCTGATCTCCCTTCCTTAGTAGAAATGTACACGAAAAAGGAAATCCAAGTTGATGAATACATATCACATAACCTGCCATTTGAAGATGTGAACAAAGCTTTCAATCTCATGCTAGAAGGCAAGTGTTTGCGTTGTGTCATCCACATGGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

392

Amino Acids

42.02

Weight (kDa)

5.42

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24760 AT5G24760 AT5G24760 AT5G24760
fragaria_vesca	FvH4_5g18580 FvH4_5g18580 FvH4_5g18580 FvH4_5g18580
malus_domestica	MD06G1241000.v1.1
prunus_persica	Prupe.5G200700_v2.0.a1 Prupe.5G245200_v2.0.a1
pyrus_communis	pycom06g21600 pycom2874g00090
rosa_chinensis	RchiOBHm_Chr7g0176931
rosa_laevigata	RLG00000005571
rosa_multiflora	Rmu_co8388823.1_g000001 Rmu_sc0005310.1_g000042
rosa_roxburghii	Rroxscaffold_3G00276240
rosa_rugosa	Rorug06G0402000 Rorug06G0402100
rosa_samantha	Rh7AG001500 Rh7BG001900 Rh7CG001300 Rh7DG001900
rosa_wichuraiana	Rw7G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	77
Acc36I	ACCTGC	2 cut(s)	77, 1101
AccII	CGCG	1 cut(s)	80
AciI	CCGC	4 cut(s)	78, 80, 330, 822
AclWI	GGATC	3 cut(s)	164, 628, 1000
AcsI	RAATTY	2 cut(s)	284, 761
AdeI	CACNNNGTG	2 cut(s)	674, 923
AfaI	GTAC	1 cut(s)	1049
AfiI	CCNNNNNNNGG	1 cut(s)	728
AgsI	TTSAA	6 cut(s)	477, 797, 845, 988, 1103, 1123
AjnI	CCWGG	2 cut(s)	200, 378
AluBI	AGCT	7 cut(s)	95, 528, 575, 593, 746, 953, 1118
AluI	AGCT	7 cut(s)	95, 528, 575, 593, 746, 953, 1118
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	500
AlwI	GGATC	3 cut(s)	164, 628, 1000
AoxI	GGCC	1 cut(s)	655
ApaLI	GTGCAC	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	186, 575, 590
ApoI	RAATTY	2 cut(s)	284, 761
AseI	ATTAAT	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	792
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	6 cut(s)	58, 121, 289, 643, 743, 866
AvaII	GGWCC	1 cut(s)	298
AxyI	CCTNAGG	1 cut(s)	683
BaeGI	GKGCMC	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	504
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	198, 562, 602
BccI	CCATC	4 cut(s)	611, 890, 894, 1002
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	2 cut(s)	202, 380
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	3 cut(s)	1017, 1133, 1174
BfmI	CTRYAG	1 cut(s)	576
BfuAI	ACCTGC	2 cut(s)	77, 1101
BglI	GCCNNNNNGGC	1 cut(s)	83
BglII	AGATCT	1 cut(s)	1019
BisI	GCNGC	4 cut(s)	78, 187, 576, 591
BlsI	GCNGC	4 cut(s)	79, 188, 577, 592
Bme1390I	CCNGG	2 cut(s)	202, 380
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	299, 450
BmrFI	CCNGG	2 cut(s)	202, 380
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	701
BmuI	ACTGGG	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpmI	CTGGAG	1 cut(s)	563
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	276
BsaBI	GATNNNNATC	2 cut(s)	155, 717
BsaJI	CCNNGG	4 cut(s)	78, 201, 224, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse1I	ACTGG	3 cut(s)	448, 865, 979
Bse21I	CCTNAGG	1 cut(s)	683
Bse3DI	GCAATG	2 cut(s)	350, 878
Bse8I	GATNNNNATC	2 cut(s)	155, 717
BseBI	CCWGG	2 cut(s)	202, 380
BseDI	CCNNGG	4 cut(s)	78, 201, 224, 379
BseGI	GGATG	4 cut(s)	515, 905, 1013, 1158
BseJI	GATNNNNATC	2 cut(s)	155, 717
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseMI	GCAATG	2 cut(s)	350, 878
BseMII	CTCAG	4 cut(s)	152, 224, 519, 574
BseNI	ACTGG	3 cut(s)	448, 865, 979
BseRI	GAGGAG	1 cut(s)	840
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	3 cut(s)	198, 562, 602
BsgI	GTGCAG	2 cut(s)	489, 609
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	657
BsiHKAI	GWGCWC	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	311, 661
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	311, 661
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	657
Bsp1286I	GDGCHC	2 cut(s)	387, 504
Bsp1407I	TGTACA	1 cut(s)	1047
Bsp143I	GATC	6 cut(s)	156, 412, 620, 992, 1019, 1024
BspACI	CCGC	4 cut(s)	78, 80, 330, 822
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	4 cut(s)	151, 223, 518, 573
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	299, 450
BspMAI	CTGCAG	1 cut(s)	580
BspMI	ACCTGC	2 cut(s)	77, 1101
BspPI	GGATC	3 cut(s)	164, 628, 1000
BsrDI	GCAATG	2 cut(s)	350, 878
BsrGI	TGTACA	1 cut(s)	1047
BsrI	ACTGG	3 cut(s)	448, 865, 979
BssECI	CCNNGG	4 cut(s)	78, 201, 224, 379
BssMI	GATC	6 cut(s)	156, 412, 620, 992, 1019, 1024
Bst2UI	CCWGG	2 cut(s)	202, 380
Bst4CI	ACNGT	4 cut(s)	313, 496, 652, 913
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstAUI	TGTACA	1 cut(s)	1047
BstC8I	GCNNGC	3 cut(s)	341, 580, 885
BstDEI	CTNAG	6 cut(s)	138, 210, 505, 560, 683, 1036
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	4 cut(s)	515, 905, 1013, 1158
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	6 cut(s)	159, 415, 623, 995, 1022, 1027
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	6 cut(s)	156, 412, 620, 992, 1019, 1024
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 92, 336, 674, 884
BstNI	CCWGG	2 cut(s)	202, 380
BstNSI	RCATGY	1 cut(s)	891
BstSCI	CCNGG	2 cut(s)	200, 378
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	504
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	198, 562, 602
BstX2I	RGATCY	1 cut(s)	1019
BstYI	RGATCY	1 cut(s)	1019
Bsu36I	CCTNAGG	1 cut(s)	683
BsuRI	GGCC	1 cut(s)	657
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	4 cut(s)	515, 905, 1013, 1158
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	4 cut(s)	318, 406, 441, 858
BveI	ACCTGC	2 cut(s)	77, 1101
Cac8I	GCNNGC	3 cut(s)	341, 580, 885
Cfr13I	GGNCC	1 cut(s)	298
Cfr42I	CCGCGG	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	1048
CviAII	CATG	7 cut(s)	50, 87, 302, 865, 888, 1129, 1165
CviQI	GTAC	1 cut(s)	1048
DdeI	CTNAG	6 cut(s)	138, 210, 505, 560, 683, 1036
DpnI	GATC	6 cut(s)	158, 414, 622, 994, 1021, 1026
DpnII	GATC	6 cut(s)	156, 412, 620, 992, 1019, 1024
DraIII	CACNNNGTG	2 cut(s)	674, 923
EciI	GGCGGA	1 cut(s)	837
Eco147I	AGGCCT	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	298
Eco81I	CCTNAGG	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	200, 378
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	7 cut(s)	53, 90, 305, 868, 891, 1132, 1168
FalI	AAGNNNNNCTT	2 cut(s)	540, 572
FaqI	GGGAC	2 cut(s)	311, 661
FatI	CATG	7 cut(s)	49, 86, 301, 864, 887, 1128, 1164
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	4 cut(s)	78, 187, 576, 591
FokI	GGATG	4 cut(s)	522, 912, 1020, 1145
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	4 cut(s)	78, 187, 576, 591
FspBI	CTAG	3 cut(s)	1017, 1133, 1174
GluI	GCNGC	4 cut(s)	78, 187, 576, 591
GsuI	CTGGAG	1 cut(s)	563
HaeIII	GGCC	1 cut(s)	657
Hin1II	CATG	7 cut(s)	53, 90, 305, 868, 891, 1132, 1168
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HindIII	AAGCTT	2 cut(s)	744, 1116
HinfI	GANTC	3 cut(s)	130, 206, 350
HphI	GGTGA	6 cut(s)	58, 121, 289, 643, 743, 866
Hpy166II	GTNNAC	6 cut(s)	134, 374, 457, 502, 1050, 1111
Hpy188I	TCNGA	5 cut(s)	213, 228, 417, 616, 1024
Hpy188III	TCNNGA	5 cut(s)	239, 259, 507, 542, 722
Hpy8I	GTNNAC	6 cut(s)	134, 374, 457, 502, 1050, 1111
HpyAV	CCTTC	5 cut(s)	21, 566, 982, 1041, 1130
HpyCH4III	ACNGT	4 cut(s)	313, 496, 652, 913
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 92, 336, 674, 884
HpyF3I	CTNAG	6 cut(s)	138, 210, 505, 560, 683, 1036
Hsp92II	CATG	7 cut(s)	53, 90, 305, 868, 891, 1132, 1168
KspI	CCGCGG	1 cut(s)	81
Kzo9I	GATC	6 cut(s)	156, 412, 620, 992, 1019, 1024
LmnI	GCTCC	4 cut(s)	92, 689, 827, 962
Lsp1109I	GCAGC	3 cut(s)	198, 562, 602
LweI	GCATC	1 cut(s)	701
MaeI	CTAG	3 cut(s)	1017, 1133, 1174
MaeIII	GTNAC	5 cut(s)	236, 277, 854, 868, 913
MalI	GATC	6 cut(s)	158, 414, 622, 994, 1021, 1026
MboI	GATC	6 cut(s)	156, 412, 620, 992, 1019, 1024
MboII	GAAGA	3 cut(s)	6, 990, 1115
MflI	RGATCY	1 cut(s)	1019
MhlI	GDGCHC	2 cut(s)	387, 504
MluCI	AATT	4 cut(s)	284, 702, 753, 761
MlyI	GAGTC	2 cut(s)	139, 215
MroXI	GAANNNNTTC	1 cut(s)	792
MseI	TTAA	2 cut(s)	401, 807
MslI	CAYNNNNRTG	4 cut(s)	465, 844, 863, 1163
MspA1I	CMGCKG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	202, 380
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	2 cut(s)	202, 380
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	5 cut(s)	83, 92, 336, 674, 884
NdeII	GATC	6 cut(s)	156, 412, 620, 992, 1019, 1024
NlaIII	CATG	7 cut(s)	53, 90, 305, 868, 891, 1132, 1168
NlaIV	GGNNCC	2 cut(s)	299, 450
NmuCI	GTSAC	3 cut(s)	236, 277, 854
NspI	RCATGY	1 cut(s)	891
PaqCI	CACCTGC	1 cut(s)	77
PceI	AGGCCT	1 cut(s)	657
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	792
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	79, 188, 577, 592
PleI	GAGTC	2 cut(s)	138, 214
PpsI	GAGTC	2 cut(s)	138, 214
PshBI	ATTAAT	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	200, 378
PspGI	CCWGG	2 cut(s)	200, 378
PspN4I	GGNNCC	2 cut(s)	299, 450
PspPI	GGNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	1019
RsaI	GTAC	1 cut(s)	1049
RsaNI	GTAC	1 cut(s)	1048
RseI	CAYNNNNRTG	4 cut(s)	465, 844, 863, 1163
SacII	CCGCGG	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	401, 807
SatI	GCNGC	4 cut(s)	78, 187, 576, 591
Sau3AI	GATC	6 cut(s)	156, 412, 620, 992, 1019, 1024
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	2 cut(s)	139, 215
ScrFI	CCNGG	2 cut(s)	202, 380
SduI	GDGCHC	2 cut(s)	387, 504
SfaNI	GCATC	1 cut(s)	701
SfcI	CTRYAG	1 cut(s)	576
Sfr303I	CCGCGG	1 cut(s)	81
SgrBI	CCGCGG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	4 cut(s)	465, 844, 863, 1163
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	4 cut(s)	284, 702, 753, 761
SseBI	AGGCCT	1 cut(s)	657
SsiI	CCGC	4 cut(s)	78, 80, 330, 822
SspMI	CTAG	3 cut(s)	1017, 1133, 1174
StuI	AGGCCT	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	200, 378
TaaI	ACNGT	4 cut(s)	313, 496, 652, 913
TaqI	TCGA	3 cut(s)	57, 258, 387
TaqII	GACCGA	1 cut(s)	629
TasI	AATT	4 cut(s)	284, 702, 753, 761
TatI	WGTACW	1 cut(s)	1047
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	401, 807
Tru9I	TTAA	2 cut(s)	401, 807
TscAI	CASTG	4 cut(s)	318, 413, 448, 865
TseFI	GTSAC	3 cut(s)	236, 277, 854
TseI	GCWGC	3 cut(s)	186, 575, 590
Tsp45I	GTSAC	3 cut(s)	236, 277, 854
TspDTI	ATGAA	2 cut(s)	307, 1089
TspGWI	ACGGA	1 cut(s)	652
TspRI	CASTG	4 cut(s)	318, 413, 448, 865
VneI	GTGCAC	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	401
XapI	RAATTY	2 cut(s)	284, 761
XceI	RCATGY	1 cut(s)	891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	792
XspI	CTAG	3 cut(s)	1017, 1133, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.