Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007421

Physical Location & Seq

Genomic Coordinates Forward (+)

150462 .. 153838

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG001900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCATTGCCTTCCGTACAACTGAAACAACCCAATAATGTCATCACCTGCAAAGCTGCGGTGGCATGGGGACCTGGAAAGCCTTTGGTGATAGAGGAAGTGGATGTGAGTCCACCTCAGCCATCGGAGATAAGGATCAAAATTGTCTGCACCTCTCTCTGTCGCAGTGACCTCACTGCCTGGGAGTCCCAGGCTATCTTTCCTCGGATATTTGGGCATGAAGCAACAGGGATTGTTGAGAGTGTTGGCCAGGAAGTGACTGAATTTACAGAAGGGGACCATGTGTTAACAGTCTTCACTGGAGAATGCGGAACATGCAGGCAATGCATATCGGGTAAAAGCAACTTATGCCAAGTACTGGGTTTAGAAAGGAGAGGTGTAATGCATAGTGATAAAGGGACACGCTTTGCCATAAGTGGGAAACCCGTTTATCATTATTGTGCAGTTTCAAGTTTCAGTGAATATACTGTCGTGCACTCGGGATGTGCTGTCAAAATCAACCCAATTGTGCCTCTGGACAAAGTATGCCTTCTCAGTTGTGGAGTAGCTGCAGGCTTGGGTGCAGCTTGGAATGTTGCTGATATATCTAATGGATCAAGTGTGGTGATATTTGGTCTCGGAACCGTAGGCCTCTCTGTTGCACAGGGTGCTAAGCTTAGGGGCGCATCAGCAATAATTGGTGTTGACACTAATCCTGAAAAGGAAGAAAAAGCAAAAGCTTTTGGAATTACCGAATTTATTAACCCCAATGACAGTAAAGAACCTGTTCAACAGGTAATTGTTAAAATGAGAGAAAGACCAGATGCCTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00625 ko00626 ko00680 ko00830 ko00980 ko00982 ko01100 ko01110 ko01120 ko01130 ko01200 ko01220 ko05204 map00010 map00071 map00350 map00625 map00626 map00680 map00830 map00980 map00982 map01100 map01110 map01120 map01130 map01200 map01220 map05204

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

271

Amino Acids

28.8

Weight (kDa)

6.52

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	41 - 166	9.4e-21	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	209 - 259	3.9e-10	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24760 AT5G24760 AT5G24760 AT5G24760
fragaria_vesca	FvH4_5g18580 FvH4_5g18580 FvH4_5g18580 FvH4_5g18580
malus_domestica	MD06G1241000.v1.1
prunus_persica	Prupe.5G200700_v2.0.a1 Prupe.5G245200_v2.0.a1
pyrus_communis	pycom06g21600 pycom2874g00090
rosa_chinensis	RchiOBHm_Chr7g0176931
rosa_laevigata	RLG00000005571
rosa_multiflora	Rmu_co8388823.1_g000001 Rmu_sc0005310.1_g000042
rosa_roxburghii	Rroxscaffold_3G00276240
rosa_rugosa	Rorug06G0402000 Rorug06G0402100
rosa_samantha	Rh7AG001500 Rh7BG001900 Rh7CG001300 Rh7DG001900
rosa_wichuraiana	Rw7G000110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	358
AciI	CCGC	2 cut(s)	59, 309
AclWI	GGATC	2 cut(s)	143, 601
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	263, 734
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	2 cut(s)	18, 357
AfiI	CCNNNNNNNGG	2 cut(s)	358, 417
AgsI	TTSAA	2 cut(s)	450, 770
AjnI	CCWGG	4 cut(s)	73, 179, 189, 249
AluBI	AGCT	5 cut(s)	56, 548, 566, 655, 719
AluI	AGCT	5 cut(s)	56, 548, 566, 655, 719
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	1 cut(s)	620
Alw44I	GTGCAC	1 cut(s)	473
AlwI	GGATC	2 cut(s)	143, 601
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	2 cut(s)	247, 628
ApaLI	GTGCAC	1 cut(s)	473
ApeKI	GCWGC	3 cut(s)	56, 548, 563
ApoI	RAATTY	2 cut(s)	263, 734
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	665
AspS9I	GGNCC	2 cut(s)	71, 277
AsuHPI	GGTGA	3 cut(s)	37, 100, 616
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	71, 277
BaeGI	GKGCMC	1 cut(s)	477
BalI	TGGCCA	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	477
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	43, 535, 575
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	4 cut(s)	75, 181, 191, 251
BcoDI	GTCTC	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	3 cut(s)	57, 549, 564
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	3 cut(s)	58, 550, 565
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	4 cut(s)	75, 181, 191, 251
Bme18I	GGWCC	2 cut(s)	71, 277
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	71, 277
BmiI	GGNNCC	3 cut(s)	72, 278, 622
BmrFI	CCNGG	4 cut(s)	75, 181, 191, 251
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	2 cut(s)	674, 793
BmuI	ACTGGG	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpmI	CTGGAG	1 cut(s)	321
Bpu10I	CCTNAGC	2 cut(s)	117, 656
Bpu1102I	GCTNAGC	1 cut(s)	651
BsaBI	GATNNNNATC	1 cut(s)	134
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	3 cut(s)	180, 189, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 417
Bse1I	ACTGG	2 cut(s)	304, 363
Bse3DI	GCAATG	2 cut(s)	5, 329
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	4 cut(s)	75, 181, 191, 251
BseDI	CCNNGG	3 cut(s)	180, 189, 203
BseGI	GGATG	2 cut(s)	109, 488
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	2 cut(s)	358, 417
BseMI	GCAATG	2 cut(s)	5, 329
BseMII	CTCAG	2 cut(s)	131, 547
BseNI	ACTGG	2 cut(s)	304, 363
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	3 cut(s)	43, 535, 575
BsgI	GTGCAG	3 cut(s)	133, 462, 582
BshFI	GGCC	2 cut(s)	249, 630
BsiHKAI	GWGCWC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	478
BslFI	GGGAC	4 cut(s)	84, 172, 290, 412
BslI	CCNNNNNNNGG	2 cut(s)	358, 417
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	4 cut(s)	84, 172, 290, 412
BsmI	GAATGC	1 cut(s)	311
BsnI	GGCC	2 cut(s)	249, 630
Bso31I	GGTCTC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	135, 593
Bsp1720I	GCTNAGC	1 cut(s)	651
BspACI	CCGC	2 cut(s)	59, 309
BspANI	GGCC	2 cut(s)	249, 630
BspCNI	CTCAG	2 cut(s)	130, 546
BspLI	GGNNCC	3 cut(s)	72, 278, 622
BspMAI	CTGCAG	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	2 cut(s)	143, 601
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	2 cut(s)	5, 329
BsrI	ACTGG	2 cut(s)	304, 363
BssECI	CCNNGG	3 cut(s)	180, 189, 203
BssMI	GATC	2 cut(s)	135, 593
Bst2UI	CCWGG	4 cut(s)	75, 181, 191, 251
Bst4CI	ACNGT	4 cut(s)	292, 469, 625, 755
BstAPI	GCANNNNNTGC	3 cut(s)	324, 348, 647
BstC8I	GCNNGC	2 cut(s)	320, 553
BstDEI	CTNAG	4 cut(s)	117, 533, 651, 656
BstF5I	GGATG	2 cut(s)	109, 488
BstHHI	GCGC	1 cut(s)	665
BstKTI	GATC	2 cut(s)	138, 596
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	2 cut(s)	135, 593
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 315, 324, 348, 647
BstNI	CCWGG	4 cut(s)	75, 181, 191, 251
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	4 cut(s)	73, 179, 189, 249
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	43, 535, 575
BstV2I	GAAGAC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	249, 630
BtsCI	GGATG	2 cut(s)	109, 488
BtsI	GCAGTG	2 cut(s)	172, 174
BtsIMutI	CAGTG	4 cut(s)	172, 174, 297, 463
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	320, 553
CfoI	GCGC	1 cut(s)	665
Cfr13I	GGNCC	2 cut(s)	71, 277
Csp6I	GTAC	2 cut(s)	17, 356
CviAII	CATG	4 cut(s)	66, 218, 281, 315
CviQI	GTAC	2 cut(s)	17, 356
DdeI	CTNAG	4 cut(s)	117, 533, 651, 656
DpnI	GATC	2 cut(s)	137, 595
DpnII	GATC	2 cut(s)	135, 593
DraIII	CACNNNGTG	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	71, 277
Eco88I	CYCGRG	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	4 cut(s)	73, 179, 189, 249
EcoT22I	ATGCAT	2 cut(s)	329, 387
FaeI	CATG	4 cut(s)	69, 221, 284, 318
FalI	AAGNNNNNCTT	2 cut(s)	513, 545
FaqI	GGGAC	4 cut(s)	84, 172, 290, 412
FatI	CATG	4 cut(s)	65, 217, 280, 314
Fnu4HI	GCNGC	3 cut(s)	57, 549, 564
FokI	GGATG	2 cut(s)	116, 495
Fsp4HI	GCNGC	3 cut(s)	57, 549, 564
GlaI	GCGC	1 cut(s)	664
GluI	GCNGC	3 cut(s)	57, 549, 564
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	249, 630
HhaI	GCGC	1 cut(s)	665
Hin1II	CATG	4 cut(s)	69, 221, 284, 318
Hin6I	GCGC	1 cut(s)	663
HinP1I	GCGC	1 cut(s)	663
HincII	GTYRAC	2 cut(s)	288, 685
HindII	GTYRAC	2 cut(s)	288, 685
HindIII	AAGCTT	2 cut(s)	653, 717
HinfI	GANTC	2 cut(s)	109, 185
HpaI	GTTAAC	1 cut(s)	288
HphI	GGTGA	3 cut(s)	37, 100, 616
Hpy166II	GTNNAC	4 cut(s)	113, 288, 475, 685
Hpy188I	TCNGA	3 cut(s)	127, 207, 620
Hpy188III	TCNNGA	3 cut(s)	480, 515, 695
Hpy8I	GTNNAC	4 cut(s)	113, 288, 475, 685
HpyAV	CCTTC	3 cut(s)	21, 266, 539
HpyCH4III	ACNGT	4 cut(s)	292, 469, 625, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 315, 324, 348, 647
HpyF3I	CTNAG	4 cut(s)	117, 533, 651, 656
Hsp92II	CATG	4 cut(s)	69, 221, 284, 318
HspAI	GCGC	1 cut(s)	663
KspAI	GTTAAC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	135, 593
Lsp1109I	GCAGC	3 cut(s)	43, 535, 575
LweI	GCATC	2 cut(s)	674, 793
MaeIII	GTNAC	2 cut(s)	167, 256
MalI	GATC	2 cut(s)	137, 595
MboI	GATC	2 cut(s)	135, 593
MboII	GAAGA	2 cut(s)	286, 716
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	1 cut(s)	477
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	7 cut(s)	141, 263, 504, 675, 726, 734, 777
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	2 cut(s)	118, 194
MnlI	CCTC	8 cut(s)	88, 126, 163, 182, 213, 368, 522, 641
Mox20I	TGGCCA	1 cut(s)	249
Mph1103I	ATGCAT	2 cut(s)	329, 387
MroXI	GAANNNNTTC	1 cut(s)	765
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	3 cut(s)	287, 741, 783
MslI	CAYNNNNRTG	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	249
MspR9I	CCNGG	4 cut(s)	75, 181, 191, 251
MunI	CAATTG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	311
MvaI	CCWGG	4 cut(s)	75, 181, 191, 251
MwoI	GCNNNNNNNGC	5 cut(s)	62, 315, 324, 348, 647
NdeII	GATC	2 cut(s)	135, 593
NlaIII	CATG	4 cut(s)	69, 221, 284, 318
NlaIV	GGNNCC	3 cut(s)	72, 278, 622
NmuCI	GTSAC	2 cut(s)	167, 256
NsiI	ATGCAT	2 cut(s)	329, 387
NspI	RCATGY	1 cut(s)	318
PaqCI	CACCTGC	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	630
PctI	GAATGC	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	765
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	58, 550, 565
PleI	GAGTC	2 cut(s)	117, 193
PpsI	GAGTC	2 cut(s)	117, 193
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	4 cut(s)	73, 179, 189, 249
PspGI	CCWGG	4 cut(s)	73, 179, 189, 249
PspN4I	GGNNCC	3 cut(s)	72, 278, 622
PspPI	GGNCC	2 cut(s)	71, 277
PspPPI	RGGWCCY	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	553
RsaI	GTAC	2 cut(s)	18, 357
RsaNI	GTAC	2 cut(s)	17, 356
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	287, 741, 783
SatI	GCNGC	3 cut(s)	57, 549, 564
Sau3AI	GATC	2 cut(s)	135, 593
Sau96I	GGNCC	2 cut(s)	71, 277
ScaI	AGTACT	1 cut(s)	357
SchI	GAGTC	2 cut(s)	118, 194
ScrFI	CCNGG	4 cut(s)	75, 181, 191, 251
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	674, 793
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	2 cut(s)	71, 277
SmiMI	CAYNNNNRTG	1 cut(s)	438
Sse9I	AATT	7 cut(s)	141, 263, 504, 675, 726, 734, 777
SseBI	AGGCCT	1 cut(s)	630
SsiI	CCGC	2 cut(s)	59, 309
StuI	AGGCCT	1 cut(s)	630
StyD4I	CCNGG	4 cut(s)	73, 179, 189, 249
TaaI	ACNGT	4 cut(s)	292, 469, 625, 755
TasI	AATT	7 cut(s)	141, 263, 504, 675, 726, 734, 777
TatI	WGTACW	1 cut(s)	355
Tru1I	TTAA	3 cut(s)	287, 741, 783
Tru9I	TTAA	3 cut(s)	287, 741, 783
TscAI	CASTG	4 cut(s)	172, 181, 304, 463
TseFI	GTSAC	2 cut(s)	167, 256
TseI	GCWGC	3 cut(s)	56, 548, 563
Tsp45I	GTSAC	2 cut(s)	167, 256
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	4 cut(s)	172, 181, 304, 463
Van91I	CCANNNNNTGG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	473
VpaK11BI	GGWCC	2 cut(s)	71, 277
XapI	RAATTY	2 cut(s)	263, 734
XceI	RCATGY	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	765
ZrmI	AGTACT	1 cut(s)	357
Zsp2I	ATGCAT	2 cut(s)	329, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.