AT5G24910

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004647
Physical Location & Seq
Reverse (-)
8567504 .. 8570367
2864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24910.1

Sequence Viewer

Length: 1599 bp
ATGGAGAATTTTATGGTAGAGATGGCCAAGACCATTTCGTGGATAGTTGTAATAGGAGTGTTAGGTTTAGGGATTCGTGTTTACGGTAAAGTGATGGCGGAGCAATGGAGGATGCGGAGGAAGCTGACGATGCAGGGCGTGAAGGGTCCTCCGCCGTCGCTATTTCGTGGAAACGTGCCGGAGATGCAAAAAATCCAGTCACAAATAATGAGTAACTCTAAACACTACTCCGGTGATAATATCATCGCCCATGACTACACTTCTTCTCTCTTTCCATATCTCGACCACTGGCGAAAACAATACGGGAGAGTGTACACGTATTCGACGGGGGTGAAGCAACACTTGTACATGAACCACCCGGAGTTGGTGAAAGAACTTAACCAAGCCAACACTCTTAACCTTGGCAAAGTCTCTTACGTCACCAAACGCCTTAAATCCATTCTTGGCCGTGGTGTTATCACCTCTAATGGGCCTCATTGGGCCCATCAACGTCGTATCATTGCACCTGAGTTTTTCCTCGACAAAGTCAAGGGAATGGTGGGATTGGTGGTGGAATCAGCGATGCCAATGCTGAGTAAATGGGAAGAGATGATGAAAAGAGAAGGAGAAATGGTGTGTGACATAATTGTAGACGAAGACCTAAGAGCTGCCTCTGCTGACGTTATCTCTAGAGCTTGCTTTGGGAGCTCTTTCTCCAAAGGCAAAGAGATCTTCTCTAAGCTTAGATGTCTTCAAAAGGCCATCACTCACAACAACATCCTCTTCAGCCTCAATGGCTTCACTGATGTTGTGTTCGGGACTAAGAAGCATGGGAACGGGAAGATTGATGAGCTAGAGAGACACATTGAGTCTTTGATATGGGAAACCGTTAAAGAAAGAGAAAGGGAATGTGTGGGAGATCACAAGAAGGATCTAATGCAGTTGATACTAGAAGGGGCCAGGAGTAGTTGTGATGGCAACTTGGAGGACAAGACACAATCTTACAAAAGTTTCGTGGTGGACAATTGCAAGAGCATCTATTTTGCCGGGCATGAGACCAGTGCGGTTGCTGTCTCTTGGTGTCTTATGCTCCTCGCTCTCAACCCTTCTTGGCAAACTCGTATCCGCGATGAAGTCTTTCTTCATTGCAAGAACGGTATACCTGACGCAGACTCTATTTCCAACCTCAAAACGGTGACAATGGTTATCCAGGAAACGTTGAGGCTATACCCACCAGCAGCATTCGTGTCGAGAGAAGCCCTTGAGGACACAAAACTCGGAAACCTCGTGGTGCCAAAGGGAGTGTGCATCTGGACGTTGATCCCTACATTGCACAGAGACCCTGAGATATGGGGAGCTGACGCAAATGAATTCAATCCAGAAAGATTTAGCGAAGGAGTCTCTAAAGCCTGCAAACACCCTCAGTCATTCGTCCCATTTGGCTTAGGGACAAGGTTGTGTTTAGGAAAGAATTTTGGTATGATGGAGCTCAAGGTTCTTGTCTCACTTATTGTGTCAAGGTTTAGCTTTACTCTCTCTCCCACATATCAACACTCTCCGGTGTTTAGAATGCTTGTAGAGCCTCAACATGGTGTTGTCATTAGAGTTCTGAGACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

532

Amino Acids

60.33

Weight (kDa)

9.06

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 90 - 516 3e-78 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1270
AccB7I CCANNNNNTGG 1 cut(s) 39
AccI GTMKAC 2 cut(s) 630, 1138
AccII CGCG 1 cut(s) 1107
AciI CCGC 5 cut(s) 98, 115, 152, 1043, 1105
AclI AACGTT 1 cut(s) 1196
AclWI GGATC 2 cut(s) 918, 1294
AcoI YGGCCR 2 cut(s) 24, 445
AcsI RAATTY 3 cut(s) 7, 1349, 1450
AcuI CTGAAG 1 cut(s) 748
AfaI GTAC 2 cut(s) 314, 347
AfiI CCNNNNNNNGG 5 cut(s) 39, 364, 468, 1171, 1568
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 2 cut(s) 734, 1354
AjnI CCWGG 2 cut(s) 938, 1188
AluBI AGCT 9 cut(s) 124, 647, 674, 687, 721, 832, 1337, 1468, 1506
AluI AGCT 9 cut(s) 124, 647, 674, 687, 721, 832, 1337, 1468, 1506
Alw21I GWGCWC 2 cut(s) 689, 1470
Alw26I GTCTC 8 cut(s) 415, 832, 1028, 1057, 1311, 1384, 1486, 1585
AlwI GGATC 2 cut(s) 918, 1294
AoxI GGCC 6 cut(s) 24, 445, 470, 480, 738, 936
ApaI GGGCCC 1 cut(s) 484
ApeKI GCWGC 2 cut(s) 647, 1217
ApoI RAATTY 3 cut(s) 7, 1349, 1450
Asp700I GAANNNNTTC 1 cut(s) 1116
AspS9I GGNCC 5 cut(s) 146, 470, 480, 481, 936
AsuC2I CCSGG 2 cut(s) 359, 1027
AsuHPI GGTGA 6 cut(s) 245, 343, 379, 412, 451, 1186
AvaII GGWCC 1 cut(s) 146
BaeGI GKGCMC 1 cut(s) 484
BalI TGGCCA 1 cut(s) 26
BanI GGYRCC 1 cut(s) 1270
BanII GRGCYC 3 cut(s) 484, 689, 1470
BauI CACGAG 1 cut(s) 1265
BbsI GAAGAC 2 cut(s) 642, 722
Bbv12I GWGCWC 2 cut(s) 689, 1470
BbvI GCAGC 2 cut(s) 634, 1229
BccI CCATC 6 cut(s) 16, 88, 492, 749, 947, 1456
BceAI ACGGC 2 cut(s) 139, 432
BcgI CGANNNNNNTGC 4 cut(s) 550, 584, 1209, 1243
BciT130I CCWGG 2 cut(s) 940, 1190
BciVI GTATCC 1 cut(s) 1112
BcnI CCSGG 2 cut(s) 359, 1027
BcoDI GTCTC 8 cut(s) 415, 832, 1028, 1057, 1311, 1384, 1486, 1585
BfaI CTAG 3 cut(s) 669, 833, 929
BfuI GTATCC 1 cut(s) 1112
BglI GCCNNNNNGGC 1 cut(s) 774
BglII AGATCT 1 cut(s) 708
BisI GCNGC 2 cut(s) 648, 1218
BlsI GCNGC 2 cut(s) 649, 1219
Bme1390I CCNGG 4 cut(s) 359, 940, 1027, 1190
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 5 cut(s) 146, 470, 480, 481, 936
BmiI GGNNCC 4 cut(s) 147, 482, 937, 1272
BmrFI CCNGG 4 cut(s) 359, 940, 1027, 1190
BmsI GCATC 6 cut(s) 102, 120, 174, 552, 1023, 1296
BpiI GAAGAC 2 cut(s) 642, 722
BplI GAGNNNNNCTC 2 cut(s) 698, 730
Bpu10I CCTNAGC 1 cut(s) 1423
BpuEI CTTGAG 2 cut(s) 1262, 1454
BpuMI CCSGG 2 cut(s) 359, 1027
BsaAI YACGTR 1 cut(s) 318
BsaI GGTCTC 2 cut(s) 1028, 1311
BsaJI CCNNGG 2 cut(s) 400, 448
BsaWI WCCGGW 2 cut(s) 230, 1537
BsaXI ACNNNNNCTCC 6 cut(s) 597, 627, 934, 964, 1501, 1531
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 364, 468, 1171, 1568
Bse1I ACTGG 3 cut(s) 196, 293, 1038
Bse3DI GCAATG 4 cut(s) 110, 498, 1123, 1307
BseBI CCWGG 2 cut(s) 940, 1190
BseDI CCNNGG 2 cut(s) 400, 448
BseGI GGATG 2 cut(s) 117, 756
BseLI CCNNNNNNNGG 5 cut(s) 39, 364, 468, 1171, 1568
BseMI GCAATG 4 cut(s) 110, 498, 1123, 1307
BseMII CTCAG 5 cut(s) 498, 563, 1314, 1415, 1580
BseNI ACTGG 3 cut(s) 196, 293, 1038
BseRI GAGGAG 1 cut(s) 1061
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 2 cut(s) 634, 1229
Bsh1236I CGCG 1 cut(s) 1107
BshFI GGCC 6 cut(s) 26, 447, 472, 482, 740, 938
BshNI GGYRCC 1 cut(s) 1270
BsiHKAI GWGCWC 2 cut(s) 689, 1470
BsiSI CCGG 5 cut(s) 179, 231, 359, 1026, 1538
BslFI GGGAC 3 cut(s) 811, 1397, 1441
BslI CCNNNNNNNGG 5 cut(s) 39, 364, 468, 1171, 1568
BsmAI GTCTC 8 cut(s) 415, 832, 1028, 1057, 1311, 1384, 1486, 1585
BsmFI GGGAC 3 cut(s) 811, 1397, 1441
BsmI GAATGC 2 cut(s) 1220, 1554
BsnI GGCC 6 cut(s) 26, 447, 472, 482, 740, 938
Bso31I GGTCTC 2 cut(s) 1028, 1311
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 3 cut(s) 484, 689, 1470
Bsp1407I TGTACA 2 cut(s) 312, 345
Bsp143I GATC 4 cut(s) 708, 898, 910, 1299
BspACI CCGC 5 cut(s) 98, 115, 152, 1043, 1105
BspANI GGCC 6 cut(s) 26, 447, 472, 482, 740, 938
BspCNI CTCAG 5 cut(s) 499, 564, 1315, 1414, 1581
BspFNI CGCG 1 cut(s) 1107
BspLI GGNNCC 4 cut(s) 147, 482, 937, 1272
BspPI GGATC 2 cut(s) 918, 1294
BspT107I GGYRCC 1 cut(s) 1270
BspTNI GGTCTC 2 cut(s) 1028, 1311
BsrDI GCAATG 4 cut(s) 110, 498, 1123, 1307
BsrGI TGTACA 2 cut(s) 312, 345
BsrI ACTGG 3 cut(s) 196, 293, 1038
BssECI CCNNGG 2 cut(s) 400, 448
BssMI GATC 4 cut(s) 708, 898, 910, 1299
BssNAI GTATAC 1 cut(s) 1139
BssSI CACGAG 1 cut(s) 1265
BssT1I CCWWGG 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 1139
Bst2BI CACGAG 1 cut(s) 1265
Bst2UI CCWGG 2 cut(s) 940, 1190
Bst4CI ACNGT 4 cut(s) 86, 868, 1136, 1174
Bst6I CTCTTC 2 cut(s) 579, 767
BstAUI TGTACA 2 cut(s) 312, 345
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 676, 1390
BstDSI CCRYGG 1 cut(s) 448
BstF5I GGATG 2 cut(s) 117, 756
BstFNI CGCG 1 cut(s) 1107
BstKTI GATC 4 cut(s) 711, 901, 913, 1302
BstMAI GTCTC 8 cut(s) 415, 832, 1028, 1057, 1311, 1384, 1486, 1585
BstMBI GATC 4 cut(s) 708, 898, 910, 1299
BstMWI GCNNNNNNNGC 7 cut(s) 121, 130, 184, 653, 684, 774, 1558
BstNI CCWGG 2 cut(s) 940, 1190
BstSCI CCNGG 4 cut(s) 357, 938, 1025, 1188
BstSLI GKGCMC 1 cut(s) 484
BstUI CGCG 1 cut(s) 1107
BstV1I GCAGC 2 cut(s) 634, 1229
BstV2I GAAGAC 2 cut(s) 642, 722
BstX2I RGATCY 2 cut(s) 708, 910
BstYI RGATCY 2 cut(s) 708, 910
BstZ17I GTATAC 1 cut(s) 1139
BsuI GTATCC 1 cut(s) 1112
BsuRI GGCC 6 cut(s) 26, 447, 472, 482, 740, 938
BtgI CCRYGG 1 cut(s) 448
BtgZI GCGATG 3 cut(s) 229, 575, 1122
BtsCI GGATG 2 cut(s) 117, 756
BtsIMutI CAGTG 3 cut(s) 286, 780, 1045
Cac8I GCNNGC 2 cut(s) 676, 1390
Cfr13I GGNCC 5 cut(s) 146, 470, 480, 481, 936
CseI GACGC 2 cut(s) 1154, 1349
Csp6I GTAC 2 cut(s) 313, 346
CviAII CATG 5 cut(s) 251, 349, 809, 1031, 1568
CviQI GTAC 2 cut(s) 313, 346
DpnI GATC 4 cut(s) 710, 900, 912, 1301
DpnII GATC 4 cut(s) 708, 898, 910, 1299
EaeI YGGCCR 2 cut(s) 24, 445
Eam1104I CTCTTC 2 cut(s) 579, 767
EarI CTCTTC 2 cut(s) 579, 767
EciI GGCGGA 2 cut(s) 113, 141
Ecl136II GAGCTC 2 cut(s) 687, 1468
Eco130I CCWWGG 1 cut(s) 400
Eco24I GRGCYC 3 cut(s) 484, 689, 1470
Eco31I GGTCTC 2 cut(s) 1028, 1311
Eco47I GGWCC 1 cut(s) 146
Eco53kI GAGCTC 2 cut(s) 687, 1468
Eco57I CTGAAG 1 cut(s) 748
EcoICRI GAGCTC 2 cut(s) 687, 1468
EcoO109I RGGNCCY 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 1349
EcoRII CCWGG 2 cut(s) 938, 1188
EcoT14I CCWWGG 1 cut(s) 400
EcoT38I GRGCYC 3 cut(s) 484, 689, 1470
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 5 cut(s) 254, 352, 812, 1034, 1571
FalI AAGNNNNNCTT 4 cut(s) 326, 358, 1104, 1136
FaqI GGGAC 3 cut(s) 811, 1397, 1441
FatI CATG 5 cut(s) 250, 348, 808, 1030, 1567
FblI GTMKAC 2 cut(s) 630, 1138
Fnu4HI GCNGC 2 cut(s) 648, 1218
FokI GGATG 2 cut(s) 124, 743
FriOI GRGCYC 3 cut(s) 484, 689, 1470
Fsp4HI GCNGC 2 cut(s) 648, 1218
FspBI CTAG 3 cut(s) 669, 833, 929
GluI GCNGC 2 cut(s) 648, 1218
HaeIII GGCC 6 cut(s) 26, 447, 472, 482, 740, 938
HapII CCGG 5 cut(s) 179, 231, 359, 1026, 1538
HgaI GACGC 2 cut(s) 1154, 1349
Hin1II CATG 5 cut(s) 254, 352, 812, 1034, 1571
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 5 cut(s) 73, 554, 848, 1151, 1377
HpaII CCGG 5 cut(s) 179, 231, 359, 1026, 1538
HphI GGTGA 6 cut(s) 245, 343, 379, 412, 451, 1186
Hpy166II GTNNAC 6 cut(s) 82, 313, 315, 631, 1000, 1139
Hpy188I TCNGA 2 cut(s) 1259, 1590
Hpy188III TCNNGA 6 cut(s) 281, 669, 796, 1230, 1291, 1358
Hpy8I GTNNAC 6 cut(s) 82, 313, 315, 631, 1000, 1139
Hpy99I CGWCG 3 cut(s) 160, 328, 495
HpyAV CCTTC 6 cut(s) 136, 596, 901, 926, 1095, 1367
HpyCH4III ACNGT 4 cut(s) 86, 868, 1136, 1174
HpyCH4IV ACGT 7 cut(s) 174, 317, 417, 490, 660, 1196, 1295
HpyCH4V TGCA 9 cut(s) 133, 187, 503, 919, 1008, 1128, 1287, 1312, 1392
HpyF10VI GCNNNNNNNGC 7 cut(s) 121, 130, 184, 653, 684, 774, 1558
HpySE526I ACGT 7 cut(s) 174, 317, 417, 490, 660, 1196, 1295
Hsp92II CATG 5 cut(s) 254, 352, 812, 1034, 1571
Kzo9I GATC 4 cut(s) 708, 898, 910, 1299
LmnI GCTCC 5 cut(s) 100, 684, 1074, 1334, 1465
Lsp1109I GCAGC 2 cut(s) 634, 1229
LweI GCATC 6 cut(s) 102, 120, 174, 552, 1023, 1296
MaeI CTAG 3 cut(s) 669, 833, 929
MaeII ACGT 7 cut(s) 174, 317, 417, 490, 660, 1196, 1295
MaeIII GTNAC 5 cut(s) 198, 212, 418, 617, 1174
MalI GATC 4 cut(s) 710, 900, 912, 1301
MboI GATC 4 cut(s) 708, 898, 910, 1299
MboII GAAGA 8 cut(s) 255, 596, 647, 703, 722, 754, 832, 1112
MfeI CAATTG 1 cut(s) 1003
MflI RGATCY 2 cut(s) 708, 910
MhlI GDGCHC 3 cut(s) 484, 689, 1470
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 5 cut(s) 7, 624, 1003, 1349, 1450
MluNI TGGCCA 1 cut(s) 26
MlyI GAGTC 3 cut(s) 857, 1145, 1386
MmeI TCCRAC 1 cut(s) 1185
Mox20I TGGCCA 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 1116
MscI TGGCCA 1 cut(s) 26
MseI TTAA 4 cut(s) 378, 396, 432, 870
Msp20I TGGCCA 1 cut(s) 26
MspI CCGG 5 cut(s) 179, 231, 359, 1026, 1538
MspR9I CCNGG 4 cut(s) 359, 940, 1027, 1190
MunI CAATTG 1 cut(s) 1003
Mva1269I GAATGC 2 cut(s) 1220, 1554
MvaI CCWGG 2 cut(s) 940, 1190
MvnI CGCG 1 cut(s) 1107
MwoI GCNNNNNNNGC 7 cut(s) 121, 130, 184, 653, 684, 774, 1558
NciI CCSGG 2 cut(s) 359, 1027
NdeII GATC 4 cut(s) 708, 898, 910, 1299
NlaIII CATG 5 cut(s) 254, 352, 812, 1034, 1571
NlaIV GGNNCC 4 cut(s) 147, 482, 937, 1272
NmuCI GTSAC 4 cut(s) 198, 418, 617, 1174
PcsI WCGNNNNNNNCGW 1 cut(s) 1263
PctI GAATGC 2 cut(s) 1220, 1554
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 2 cut(s) 73, 554
PflFI GACNNNGTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 39
PfoI TCCNGGA 1 cut(s) 1188
PkrI GCNGC 2 cut(s) 649, 1219
PleI GAGTC 3 cut(s) 856, 1145, 1385
PpsI GAGTC 3 cut(s) 856, 1145, 1385
Ppu21I YACGTR 1 cut(s) 318
PpuMI RGGWCCY 1 cut(s) 146
Psp124BI GAGCTC 2 cut(s) 689, 1470
Psp1406I AACGTT 1 cut(s) 1196
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 2 cut(s) 938, 1188
PspGI CCWGG 2 cut(s) 938, 1188
PspN4I GGNNCC 4 cut(s) 147, 482, 937, 1272
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 5 cut(s) 146, 470, 480, 481, 936
PspPPI RGGWCCY 1 cut(s) 146
PsuI RGATCY 2 cut(s) 708, 910
PsyI GACNNNGTC 1 cut(s) 524
RsaI GTAC 2 cut(s) 314, 347
RsaNI GTAC 2 cut(s) 313, 346
SacI GAGCTC 2 cut(s) 689, 1470
SaqAI TTAA 4 cut(s) 378, 396, 432, 870
SatI GCNGC 2 cut(s) 648, 1218
Sau3AI GATC 4 cut(s) 708, 898, 910, 1299
Sau96I GGNCC 5 cut(s) 146, 470, 480, 481, 936
SchI GAGTC 3 cut(s) 857, 1145, 1386
ScrFI CCNGG 4 cut(s) 359, 940, 1027, 1190
SduI GDGCHC 3 cut(s) 484, 689, 1470
SfaNI GCATC 6 cut(s) 102, 120, 174, 552, 1023, 1296
SinI GGWCC 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 1241, 1469
SmoI CTYRAG 2 cut(s) 1241, 1469
Sse9I AATT 5 cut(s) 7, 624, 1003, 1349, 1450
SsiI CCGC 5 cut(s) 98, 115, 152, 1043, 1105
SspMI CTAG 3 cut(s) 669, 833, 929
SstI GAGCTC 2 cut(s) 689, 1470
StyD4I CCNGG 4 cut(s) 357, 938, 1025, 1188
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 4 cut(s) 86, 868, 1136, 1174
TaiI ACGT 7 cut(s) 177, 320, 420, 493, 663, 1199, 1298
TaqI TCGA 4 cut(s) 282, 323, 519, 1229
TasI AATT 5 cut(s) 7, 624, 1003, 1349, 1450
TatI WGTACW 2 cut(s) 312, 345
TfiI GAWTC 2 cut(s) 73, 554
Tru1I TTAA 4 cut(s) 378, 396, 432, 870
Tru9I TTAA 4 cut(s) 378, 396, 432, 870
TscAI CASTG 3 cut(s) 293, 787, 1045
TseFI GTSAC 4 cut(s) 198, 418, 617, 1174
TseI GCWGC 2 cut(s) 647, 1217
Tsp45I GTSAC 4 cut(s) 198, 418, 617, 1174
TspDTI ATGAA 5 cut(s) 365, 608, 1112, 1125, 1362
TspRI CASTG 3 cut(s) 293, 787, 1045
Tth111I GACNNNGTC 1 cut(s) 524
Van91I CCANNNNNTGG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 3 cut(s) 7, 1349, 1450
XbaI TCTAGA 1 cut(s) 668
XmiI GTMKAC 2 cut(s) 630, 1138
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 3 cut(s) 669, 833, 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.