Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004647

Physical Location & Seq

Genomic Coordinates Forward (+)

6687495 .. 6690780

Gene Structure 3286 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026871

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGGAGCTCTCGCTTCATTTCAGAGTCGTTTCTTCCGTAGTTCTTTTGGGACTGGTTGGCTTCTTTCTTCATCTCTACAACACAGTCTGGTTGAAGTCCGTGAGACTCCGAAGGAAGCTCCAAATGCAAGGCATCAAAGGCCCTACACCTTCTTTACTATATGGGAATCTCGCTGAGATGCAGAAAATCCAACTCCAAGCTCAGAAGTCTCCAAATCACTCTGAATTTGTAGCCCACGACTACACTTCCAGCCTCTTCCCGTATTTCGAACACTGGCGAAAAGAATACGGTTTAATTTACACGTATTCAACAGGATTGAGGCAGCATTTATATGTGAACCAACCAGAGCTAGTGAAGGAAATGAACCAGTGCAATAGTTTGGATTTAGGTAAGCCTTCGTATGTAAGCAAGAGACTTGCTCCCATGCTTGGAAATGGAATTCTCAGATCCAATGGCATATTTTGGTTACAACAAAGAAAAATTGTTGCACCTGAGTTTTTCACAGACAAAGTCAAGGCGATGGTAGGGTTGATGTTGGAGTCGGCGCAACCATTGGTTAGAAAATGGGAGGAGTGTATTGAAGGACAAGGAGGTATGAGAGCAGAGATTCAAGTAGATGAGCATTTAAGGGGTTTCTCAGCTGATGTTATCGCAAGGGCTTGTTTTGGGAGTTCTTATTCTAAGGGCAAAGAGATTTTCTCAAAGCTTAGAAGTCTTCAGGAAATAATGTCTCATCAACCCTTCCTCTTTGGATCATGTTCTAATTTAGGAGGGTTGAAAAAGCAAAAGGAGATAAGTTGTTTAGAGAGAGTGATAGAGTCATTGATATGGGAAACTGTGAAAGAACGCGAACGAGAAGGGTTAGAGACTTCTTCGTCAGAAAAGGATCTATTGCAGTTAATATTAGTGGGAGCGATGAGTGACCAAAGCCTAGGCAAAGGCAAGGATTCATCCAAGCGATTCATAGTTGACAACTGCAAGAACATTTACTTTGCAGGGCATGAATCCACTGGTGTTGCTGCCTCTTGGTGTTTGATGCTACTCGCTTTACATCCCGAGTGGCAATCTCGAATCAGGACCGAGTTGGCAGAAGTTTGCCCCGATGGTCAGCTAGATGCTAATTCACTCCCTCAATTGAAAACGATAAATATGGTGATTCAAGAAGTCATGCGTCTATACCCACCAGCTGCTTTTGTGTCAAGAGAAGCACTTGAAGACACCCAGGTGGGAAACATAAGCATTCCGAAAGGGTTATACTTGTGGACTTTGATCCCAACATTGCACAGAGACACAGACATTTGGGGACAAGATGCAAATGAATTCAAACCTGAGAGGTTCATTGATGGTGTCTCAAAGGCTTGCAAGTTTCCTCAAGCCTATATCCCCTTTGGTTTGGGTCCTCGAACCTGTTTAGGCAGAAACTTTGCTATGGTACAATTGAAGGTTGTCCTCTCCCTCATTATCTCCAAGTTCACTTTCTCTCTATCACCCAAATACAGACACTCCCCTGCTTTCAAAATGATTGTAGAGCCTGGAAACGGTGTACAGATTCTCATTCAAAAATCTCATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009690 GO:0009691 GO:0009987 GO:0010817 GO:0016491 GO:0018130 GO:0019438 GO:0033397 GO:0033398 GO:0033400 GO:0033466 GO:0034641 GO:0034754 GO:0042445 GO:0042446 GO:0044237 GO:0044249 GO:0044271 GO:0046483 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

525

Amino Acids

59.36

Weight (kDa)

9.03

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	84 - 506	1.3e-75	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24900 AT5G24900 AT5G24910 AT5G24910
fragaria_vesca	FvH4_7g26340 FvH4_7g26340 FvH4_7g26340 FvH4_7g26340
malus_domestica	MD01G1172500.v1.1 MD07G1238800.v1.1
prunus_persica	Prupe.2G267600_v2.0.a1 Prupe.2G267600_v2.0.a1
pyrus_communis	pycom01g18400 pycom07g21480
rosa_chinensis	RchiOBHm_Chr1g0372801 RchiOBHm_Chr1g0372871
rosa_laevigata	RLG00000026870 RLG00000026871
rosa_multiflora	Rmu_sc0009717.1_g000003 Rmu_sc0011206.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284660 Rroxscaffold_4G00284680
rosa_rugosa	Rorug01G0374400
rosa_samantha	Rh1AG383200 Rh1BG346900 Rh1CG360300 Rh1CG360400 Rh1DG377800 Rh1DG377900
rosa_wichuraiana	Rw1G033740 Rw1G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	874
AccII	CGCG	1 cut(s)	849
AclWI	GGATC	4 cut(s)	441, 760, 894, 1264
AcsI	RAATTY	3 cut(s)	224, 438, 1319
AcuI	CTGAAG	1 cut(s)	701
AfaI	GTAC	2 cut(s)	1434, 1545
AfiI	CCNNNNNNNGG	2 cut(s)	428, 1538
AflIII	ACRYGT	1 cut(s)	300
AjnI	CCWGG	2 cut(s)	1221, 1531
AjuI	GAANNNNNNNTTGG	2 cut(s)	1460, 1492
AleI	CACNNNNGTG	1 cut(s)	1223
AluBI	AGCT	8 cut(s)	7, 118, 200, 349, 641, 706, 1111, 1187
AluI	AGCT	8 cut(s)	7, 118, 200, 349, 641, 706, 1111, 1187
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	7 cut(s)	97, 213, 406, 735, 860, 1281, 1354
AlwI	GGATC	4 cut(s)	441, 760, 894, 1264
Ama87I	CYCGRG	1 cut(s)	1055
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	3 cut(s)	322, 1019, 1187
ApoI	RAATTY	3 cut(s)	224, 438, 1319
AspA2I	CCTAGG	1 cut(s)	931
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	3 cut(s)	140, 1077, 1397
AsuHPI	GGTGA	2 cut(s)	1165, 1479
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	1055
AvaII	GGWCC	2 cut(s)	1077, 1397
AvrII	CCTAGG	1 cut(s)	931
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	707, 1221
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	334, 1006, 1174
BccI	CCATC	3 cut(s)	514, 1097, 1337
BciT130I	CCWGG	2 cut(s)	1223, 1533
BcoDI	GTCTC	7 cut(s)	97, 213, 406, 735, 860, 1281, 1354
BfaI	CTAG	3 cut(s)	350, 932, 1112
BfmI	CTRYAG	1 cut(s)	1571
BisI	GCNGC	3 cut(s)	323, 1020, 1188
BlnI	CCTAGG	1 cut(s)	931
BlsI	GCNGC	3 cut(s)	324, 1021, 1189
Bme1390I	CCNGG	2 cut(s)	1223, 1533
Bme18I	GGWCC	2 cut(s)	1077, 1397
BmeT110I	CYCGRG	1 cut(s)	1055
BmgT120I	GGNCC	3 cut(s)	140, 1077, 1397
BmiI	GGNNCC	1 cut(s)	1398
BmrFI	CCNGG	2 cut(s)	1223, 1533
BmsI	GCATC	5 cut(s)	141, 168, 1026, 1105, 1300
BpiI	GAAGAC	2 cut(s)	707, 1221
BplI	GAGNNNNNCTC	4 cut(s)	403, 435, 683, 715
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	1356
BsaAI	YACGTR	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	931, 1221
BsaXI	ACNNNNNCTCC	2 cut(s)	1487, 1517
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 1538
Bse1I	ACTGG	4 cut(s)	57, 278, 367, 1015
Bse3DI	GCAATG	1 cut(s)	1277
BseBI	CCWGG	2 cut(s)	1223, 1533
BseDI	CCNNGG	2 cut(s)	931, 1221
BseGI	GGATG	2 cut(s)	950, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	428, 1538
BseMI	GCAATG	1 cut(s)	1277
BseMII	CTCAG	6 cut(s)	165, 215, 457, 483, 651, 1320
BseNI	ACTGG	4 cut(s)	57, 278, 367, 1015
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	3 cut(s)	334, 1006, 1174
Bsh1236I	CGCG	1 cut(s)	849
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	1055
BslFI	GGGAC	2 cut(s)	63, 1317
BslI	CCNNNNNNNGG	2 cut(s)	428, 1538
BsmAI	GTCTC	7 cut(s)	97, 213, 406, 735, 860, 1281, 1354
BsmFI	GGGAC	2 cut(s)	63, 1317
BsmI	GAATGC	1 cut(s)	1239
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	1055
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	1543
Bsp143I	GATC	4 cut(s)	446, 752, 886, 1269
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	6 cut(s)	166, 214, 456, 484, 650, 1321
BspFNI	CGCG	1 cut(s)	849
BspLI	GGNNCC	1 cut(s)	1398
BspPI	GGATC	4 cut(s)	441, 760, 894, 1264
BspT104I	TTCGAA	1 cut(s)	267
BsrDI	GCAATG	1 cut(s)	1277
BsrGI	TGTACA	1 cut(s)	1543
BsrI	ACTGG	4 cut(s)	57, 278, 367, 1015
BssECI	CCNNGG	2 cut(s)	931, 1221
BssMI	GATC	4 cut(s)	446, 752, 886, 1269
BssT1I	CCWWGG	1 cut(s)	931
Bst2UI	CCWGG	2 cut(s)	1223, 1533
Bst4CI	ACNGT	4 cut(s)	85, 290, 838, 1541
Bst6I	CTCTTC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	1543
BstBAI	YACGTR	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	1360
BstDEI	CTNAG	8 cut(s)	174, 201, 443, 492, 637, 681, 707, 1329
BstF5I	GGATG	2 cut(s)	950, 1051
BstFNI	CGCG	1 cut(s)	849
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	4 cut(s)	449, 755, 889, 1272
BstMAI	GTCTC	7 cut(s)	97, 213, 406, 735, 860, 1281, 1354
BstMBI	GATC	4 cut(s)	446, 752, 886, 1269
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 138
BstNI	CCWGG	2 cut(s)	1223, 1533
BstSCI	CCNGG	2 cut(s)	1221, 1531
BstSFI	CTRYAG	1 cut(s)	1571
BstUI	CGCG	1 cut(s)	849
BstV1I	GCAGC	3 cut(s)	334, 1006, 1174
BstV2I	GAAGAC	2 cut(s)	707, 1221
BstX2I	RGATCY	2 cut(s)	446, 886
BstYI	RGATCY	2 cut(s)	446, 886
BsuRI	GGCC	1 cut(s)	141
BtgZI	GCGATG	2 cut(s)	533, 929
BtsCI	GGATG	2 cut(s)	950, 1051
BtsIMutI	CAGTG	3 cut(s)	271, 374, 1008
Cac8I	GCNNGC	1 cut(s)	1360
CfoI	GCGC	1 cut(s)	547
Cfr13I	GGNCC	3 cut(s)	140, 1077, 1397
CseI	GACGC	1 cut(s)	1160
Csp6I	GTAC	2 cut(s)	1433, 1544
CspCI	CAANNNNNGTGG	2 cut(s)	997, 1032
CviAII	CATG	4 cut(s)	424, 756, 1001, 1168
CviQI	GTAC	2 cut(s)	1433, 1544
DdeI	CTNAG	8 cut(s)	174, 201, 443, 492, 637, 681, 707, 1329
DpnI	GATC	4 cut(s)	448, 754, 888, 1271
DpnII	GATC	4 cut(s)	446, 752, 886, 1269
DrdI	GACNNNNNNGTC	1 cut(s)	874
DseDI	GACNNNNNNGTC	1 cut(s)	874
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	931
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	1077, 1397
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	1055
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	2 cut(s)	140, 1397
EcoRI	GAATTC	2 cut(s)	438, 1319
EcoRII	CCWGG	2 cut(s)	1221, 1531
EcoT14I	CCWWGG	1 cut(s)	931
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	931
FaeI	CATG	4 cut(s)	427, 759, 1004, 1171
FaqI	GGGAC	2 cut(s)	63, 1317
FatI	CATG	4 cut(s)	423, 755, 1000, 1167
Fnu4HI	GCNGC	3 cut(s)	323, 1020, 1188
FokI	GGATG	2 cut(s)	937, 1038
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	323, 1020, 1188
FspBI	CTAG	3 cut(s)	350, 932, 1112
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	3 cut(s)	323, 1020, 1188
HaeIII	GGCC	1 cut(s)	141
HgaI	GACGC	1 cut(s)	1160
HhaI	GCGC	1 cut(s)	547
Hin1II	CATG	4 cut(s)	427, 759, 1004, 1171
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	1 cut(s)	704
HphI	GGTGA	2 cut(s)	1165, 1479
Hpy166II	GTNNAC	5 cut(s)	337, 970, 1263, 1473, 1544
Hpy188I	TCNGA	7 cut(s)	23, 110, 204, 223, 446, 880, 1245
Hpy188III	TCNNGA	6 cut(s)	719, 1055, 1068, 1075, 1160, 1200
Hpy8I	GTNNAC	5 cut(s)	337, 970, 1263, 1473, 1544
HpyAV	CCTTC	8 cut(s)	105, 159, 349, 405, 575, 751, 851, 1435
HpyCH4III	ACNGT	4 cut(s)	85, 290, 838, 1541
HpyCH4IV	ACGT	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 138
HpyF3I	CTNAG	8 cut(s)	174, 201, 443, 492, 637, 681, 707, 1329
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	4 cut(s)	427, 759, 1004, 1171
HspAI	GCGC	1 cut(s)	545
Kzo9I	GATC	4 cut(s)	446, 752, 886, 1269
LmnI	GCTCC	4 cut(s)	4, 123, 424, 911
Lsp1109I	GCAGC	3 cut(s)	334, 1006, 1174
LweI	GCATC	5 cut(s)	141, 168, 1026, 1105, 1300
MaeI	CTAG	3 cut(s)	350, 932, 1112
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	2 cut(s)	465, 920
MalI	GATC	4 cut(s)	448, 754, 888, 1271
MboI	GATC	4 cut(s)	446, 752, 886, 1269
MboII	GAAGA	6 cut(s)	24, 59, 247, 707, 864, 1226
MfeI	CAATTG	2 cut(s)	1133, 1436
MflI	RGATCY	2 cut(s)	446, 886
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	9 cut(s)	224, 294, 438, 480, 763, 1120, 1133, 1319, 1436
MlyI	GAGTC	4 cut(s)	33, 99, 548, 827
MmeI	TCCRAC	2 cut(s)	214, 516
MseI	TTAA	3 cut(s)	293, 626, 899
MslI	CAYNNNNRTG	3 cut(s)	330, 826, 1223
MspA1I	CMGCKG	2 cut(s)	641, 1187
MspR9I	CCNGG	2 cut(s)	1223, 1533
MunI	CAATTG	2 cut(s)	1133, 1436
Mva1269I	GAATGC	1 cut(s)	1239
MvaI	CCWGG	2 cut(s)	1223, 1533
MvnI	CGCG	1 cut(s)	849
MwoI	GCNNNNNNNGC	2 cut(s)	124, 138
NdeII	GATC	4 cut(s)	446, 752, 886, 1269
NlaIII	CATG	4 cut(s)	427, 759, 1004, 1171
NlaIV	GGNNCC	1 cut(s)	1398
NmuCI	GTSAC	1 cut(s)	920
NspV	TTCGAA	1 cut(s)	267
OliI	CACNNNNGTG	1 cut(s)	1223
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	1239
PfeI	GAWTC	8 cut(s)	166, 607, 947, 960, 1004, 1071, 1156, 1549
PflFI	GACNNNGTC	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	324, 1021, 1189
PleI	GAGTC	4 cut(s)	32, 99, 547, 826
PpsI	GAGTC	4 cut(s)	32, 99, 547, 826
Ppu21I	YACGTR	1 cut(s)	303
PpuMI	RGGWCCY	1 cut(s)	1397
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	1397
Psp6I	CCWGG	2 cut(s)	1221, 1531
PspGI	CCWGG	2 cut(s)	1221, 1531
PspN4I	GGNNCC	1 cut(s)	1398
PspPI	GGNCC	3 cut(s)	140, 1077, 1397
PspPPI	RGGWCCY	1 cut(s)	1397
PsuI	RGATCY	2 cut(s)	446, 886
PsyI	GACNNNGTC	1 cut(s)	509
PvuII	CAGCTG	2 cut(s)	641, 1187
RsaI	GTAC	2 cut(s)	1434, 1545
RsaNI	GTAC	2 cut(s)	1433, 1544
RseI	CAYNNNNRTG	3 cut(s)	330, 826, 1223
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	293, 626, 899
SatI	GCNGC	3 cut(s)	323, 1020, 1188
Sau3AI	GATC	4 cut(s)	446, 752, 886, 1269
Sau96I	GGNCC	3 cut(s)	140, 1077, 1397
SchI	GAGTC	4 cut(s)	33, 99, 548, 827
ScrFI	CCNGG	2 cut(s)	1223, 1533
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	5 cut(s)	141, 168, 1026, 1105, 1300
SfcI	CTRYAG	1 cut(s)	1571
SfuI	TTCGAA	1 cut(s)	267
SinI	GGWCC	2 cut(s)	1077, 1397
SmiMI	CAYNNNNRTG	3 cut(s)	330, 826, 1223
SmlI	CTYRAG	1 cut(s)	1371
SmoI	CTYRAG	1 cut(s)	1371
Sse9I	AATT	9 cut(s)	224, 294, 438, 480, 763, 1120, 1133, 1319, 1436
SspI	AATATT	1 cut(s)	903
SspMI	CTAG	3 cut(s)	350, 932, 1112
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	1221, 1531
StyI	CCWWGG	1 cut(s)	931
TaaI	ACNGT	4 cut(s)	85, 290, 838, 1541
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	3 cut(s)	267, 1069, 1402
TaqII	GACCGA	1 cut(s)	1094
TasI	AATT	9 cut(s)	224, 294, 438, 480, 763, 1120, 1133, 1319, 1436
TatI	WGTACW	1 cut(s)	1543
TfiI	GAWTC	8 cut(s)	166, 607, 947, 960, 1004, 1071, 1156, 1549
Tru1I	TTAA	3 cut(s)	293, 626, 899
Tru9I	TTAA	3 cut(s)	293, 626, 899
TscAI	CASTG	3 cut(s)	278, 374, 1015
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	3 cut(s)	322, 1019, 1187
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	8 cut(s)	5, 59, 377, 939, 952, 1017, 1327, 1332
TspGWI	ACGGA	2 cut(s)	25, 88
TspRI	CASTG	3 cut(s)	278, 374, 1015
Tth111I	GACNNNGTC	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	1077, 1397
XapI	RAATTY	3 cut(s)	224, 438, 1319
XmaJI	CCTAGG	1 cut(s)	931
XspI	CTAG	3 cut(s)	350, 932, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.