Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004647

Physical Location & Seq

Genomic Coordinates Reverse (-)

59979218 .. 59992724

Gene Structure 13507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG377800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGCTCTCTCGTCATTTCAGAGTCGTTTCTTCCCTAGTTCTTTTGGGACTGGTTGGCTTCTTTCTTCATCTCTACAACACAGTCTGGTTGAAGTCCGTGAGGCTCCGAAGGAAGCTCCAAATGCAAGGCATCAAGGGCCCTACACCTTCTTTACTATATGGGAATCTCGCTGAGATGCAGAAAATCCAACTCCAAGCTCAGAAGTCTCCAAATCACTCTGAATTTGTAGCCCACGACTACACTTCCAGCCTCTTCCCGTATTTCGAACACTGGCGAAAAGAATACGGTTTAATTTACACGTATTCAACAGGATTGAGGCAGCATTTATATGTGAACCAACCAGAGCTAGTGAAGGAAATGAACCAGTGTAATAGTTTGGATTTAGGTAAGCCTTCCTATGTAAGCAAGAGACTTGCTCCCATGCTTGGAAATGGAATTCTCAGATCCAATGGCATATTTTGGTTACAACAAAGAAAAATTGTTGCACCTGAGTTTTTCACAGACAAAGTCAAGGCGATGGTAGGGTTGATGTTGGAGTCGGCGCAACCATTGCTTAGAAAATGGGAGGAGTGTATTGAAGGACAAGGAGGTATGAGAGCAGAGATTAAAGTAGATGAGCATTTAAGGGGTTTCTCAGCTGATGTTATCGCAAGGGCTTGTTTTGGGAGTTCTTATTCTAAGGGCAAAGAGATTTTCTCAAAGCTTAGAAGTCTTCAGGAAATAATGTCTCATCAACCCTTCCTCTTTGGATCATTTTCTAATTTAGGAGGGTTGAAAAAGCAAAAGGAGATAAGTTGTTTAGAGAGAGAGATAGAGTCATTGATATGGGAAACTGTGAAAGAACGCGAACGAGAAGGGTTAGAGACTTCTTCGTCAGAAAAGGATCTATTGCAGTTAATATTAGTGGGAGCCATGAGTGACCAAAGCCTAGGCAAAGGCAAGGATTCATCCAAGCGATTCATAGTTGACAACTGCAAGAACATTTACTTTGCAGGGCATGAATCCACTGGTGTTGCTGCCTCTTGGTGTTTGATGCTACTAGCTTTACATCCCGAGTGGCAATCTCGAATCAGGACCGAGTTGGCAGAAGTTTGCCCCGATGGTCAGCTAGATGCTAATTCACTCCGTCAATTGAAAACGGGGGTCTCAAGCCGACGCCAAAGCAAAGATACAGAACAAAAATCACAACTTGGAGATTGCAGAGCTCTCAAAGTATGCAACAACAACTCATCTGTTATCTTGGTCCAAGAATTCTGGGCTGCTCAGCATTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009690 GO:0009691 GO:0009987 GO:0010817 GO:0016491 GO:0018130 GO:0019438 GO:0033397 GO:0033398 GO:0033400 GO:0033466 GO:0034641 GO:0034754 GO:0042445 GO:0042446 GO:0044237 GO:0044249 GO:0044271 GO:0046483 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

426

Amino Acids

48.47

Weight (kDa)

9.02

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	84 - 375	1.7e-32	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24900 AT5G24900 AT5G24910 AT5G24910
fragaria_vesca	FvH4_7g26340 FvH4_7g26340 FvH4_7g26340 FvH4_7g26340
malus_domestica	MD01G1172500.v1.1 MD07G1238800.v1.1
prunus_persica	Prupe.2G267600_v2.0.a1 Prupe.2G267600_v2.0.a1
pyrus_communis	pycom01g18400 pycom07g21480
rosa_chinensis	RchiOBHm_Chr1g0372801 RchiOBHm_Chr1g0372871
rosa_laevigata	RLG00000026870 RLG00000026871
rosa_multiflora	Rmu_sc0009717.1_g000003 Rmu_sc0011206.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284660 Rroxscaffold_4G00284680
rosa_rugosa	Rorug01G0374400
rosa_samantha	Rh1AG383200 Rh1BG346900 Rh1CG360300 Rh1CG360400 Rh1DG377800 Rh1DG377900
rosa_wichuraiana	Rw1G033740 Rw1G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	874
AccII	CGCG	1 cut(s)	849
AclWI	GGATC	3 cut(s)	441, 760, 894
AcsI	RAATTY	3 cut(s)	224, 438, 1253
AcuI	CTGAAG	1 cut(s)	701
AcyI	GRCGYC	1 cut(s)	1159
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	5 cut(s)	94, 309, 581, 778, 1138
AluBI	AGCT	9 cut(s)	7, 118, 200, 349, 641, 706, 1046, 1111, 1208
AluI	AGCT	9 cut(s)	7, 118, 200, 349, 641, 706, 1046, 1111, 1208
Alw21I	GWGCWC	2 cut(s)	9, 1210
Alw26I	GTCTC	5 cut(s)	213, 406, 735, 860, 1153
AlwI	GGATC	3 cut(s)	441, 760, 894
Ama87I	CYCGRG	1 cut(s)	1055
AoxI	GGCC	1 cut(s)	139
ApaI	GGGCCC	1 cut(s)	143
ApeKI	GCWGC	3 cut(s)	322, 1019, 1262
ApoI	RAATTY	3 cut(s)	224, 438, 1253
AspA2I	CCTAGG	1 cut(s)	931
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	4 cut(s)	139, 140, 1077, 1246
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	1055
AvaII	GGWCC	2 cut(s)	1077, 1246
AvrII	CCTAGG	1 cut(s)	931
BaeGI	GKGCMC	1 cut(s)	143
BanII	GRGCYC	3 cut(s)	9, 143, 1210
BbsI	GAAGAC	1 cut(s)	707
Bbv12I	GWGCWC	2 cut(s)	9, 1210
BbvI	GCAGC	3 cut(s)	334, 1006, 1249
BccI	CCATC	2 cut(s)	514, 1097
BcoDI	GTCTC	5 cut(s)	213, 406, 735, 860, 1153
BfaI	CTAG	5 cut(s)	38, 350, 932, 1043, 1112
BisI	GCNGC	3 cut(s)	323, 1020, 1263
BlnI	CCTAGG	1 cut(s)	931
BlpI	GCTNAGC	1 cut(s)	1266
BlsI	GCNGC	3 cut(s)	324, 1021, 1264
Bme18I	GGWCC	2 cut(s)	1077, 1246
BmeT110I	CYCGRG	1 cut(s)	1055
BmgT120I	GGNCC	4 cut(s)	139, 140, 1077, 1246
BmiI	GGNNCC	3 cut(s)	107, 141, 913
BmsI	GCATC	4 cut(s)	141, 168, 1026, 1105
BpiI	GAAGAC	1 cut(s)	707
BplI	GAGNNNNNCTC	4 cut(s)	403, 435, 683, 715
Bpu1102I	GCTNAGC	1 cut(s)	1266
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	1135
BsaAI	YACGTR	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	1159
BsaI	GGTCTC	1 cut(s)	1153
BsaJI	CCNNGG	1 cut(s)	931
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	4 cut(s)	57, 278, 367, 1015
Bse3DI	GCAATG	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	931
BseGI	GGATG	2 cut(s)	950, 1051
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	6 cut(s)	165, 215, 457, 483, 651, 1280
BseNI	ACTGG	4 cut(s)	57, 278, 367, 1015
BseRI	GAGGAG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	334, 1006, 1249
Bsh1236I	CGCG	1 cut(s)	849
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	2 cut(s)	9, 1210
BsiHKCI	CYCGRG	1 cut(s)	1055
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	5 cut(s)	213, 406, 735, 860, 1153
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	1153
BsoBI	CYCGRG	1 cut(s)	1055
Bsp119I	TTCGAA	1 cut(s)	267
Bsp120I	GGGCCC	1 cut(s)	139
Bsp1286I	GDGCHC	3 cut(s)	9, 143, 1210
Bsp143I	GATC	3 cut(s)	446, 752, 886
Bsp1720I	GCTNAGC	1 cut(s)	1266
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	6 cut(s)	166, 214, 456, 484, 650, 1279
BspFNI	CGCG	1 cut(s)	849
BspLI	GGNNCC	3 cut(s)	107, 141, 913
BspPI	GGATC	3 cut(s)	441, 760, 894
BspT104I	TTCGAA	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	1153
BsrDI	GCAATG	1 cut(s)	551
BsrI	ACTGG	4 cut(s)	57, 278, 367, 1015
BssECI	CCNNGG	1 cut(s)	931
BssMI	GATC	3 cut(s)	446, 752, 886
BssNI	GRCGYC	1 cut(s)	1159
BssT1I	CCWWGG	1 cut(s)	931
Bst4CI	ACNGT	3 cut(s)	85, 290, 838
Bst6I	CTCTTC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	1159
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstBAI	YACGTR	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	267
BstDEI	CTNAG	9 cut(s)	174, 201, 443, 492, 557, 637, 681, 707, 1266
BstF5I	GGATG	2 cut(s)	950, 1051
BstFNI	CGCG	1 cut(s)	849
BstHHI	GCGC	1 cut(s)	547
BstKTI	GATC	3 cut(s)	449, 755, 889
BstMAI	GTCTC	5 cut(s)	213, 406, 735, 860, 1153
BstMBI	GATC	3 cut(s)	446, 752, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 138, 553
BstSLI	GKGCMC	1 cut(s)	143
BstUI	CGCG	1 cut(s)	849
BstV1I	GCAGC	3 cut(s)	334, 1006, 1249
BstV2I	GAAGAC	1 cut(s)	707
BstX2I	RGATCY	2 cut(s)	446, 886
BstYI	RGATCY	2 cut(s)	446, 886
BsuRI	GGCC	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	533
BtsCI	GGATG	2 cut(s)	950, 1051
BtsIMutI	CAGTG	3 cut(s)	271, 374, 1008
CfoI	GCGC	1 cut(s)	547
Cfr13I	GGNCC	4 cut(s)	139, 140, 1077, 1246
CseI	GACGC	1 cut(s)	1167
CspCI	CAANNNNNGTGG	2 cut(s)	997, 1032
CviAII	CATG	3 cut(s)	424, 916, 1001
DdeI	CTNAG	9 cut(s)	174, 201, 443, 492, 557, 637, 681, 707, 1266
DpnI	GATC	3 cut(s)	448, 754, 888
DpnII	GATC	3 cut(s)	446, 752, 886
DrdI	GACNNNNNNGTC	1 cut(s)	874
DseDI	GACNNNNNNGTC	1 cut(s)	874
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Ecl136II	GAGCTC	2 cut(s)	7, 1208
Eco130I	CCWWGG	1 cut(s)	931
Eco24I	GRGCYC	3 cut(s)	9, 143, 1210
Eco31I	GGTCTC	1 cut(s)	1153
Eco47I	GGWCC	2 cut(s)	1077, 1246
Eco53kI	GAGCTC	2 cut(s)	7, 1208
Eco57I	CTGAAG	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	1055
EcoICRI	GAGCTC	2 cut(s)	7, 1208
EcoO109I	RGGNCCY	2 cut(s)	139, 140
EcoRI	GAATTC	2 cut(s)	438, 1253
EcoT14I	CCWWGG	1 cut(s)	931
EcoT38I	GRGCYC	3 cut(s)	9, 143, 1210
ErhI	CCWWGG	1 cut(s)	931
FaeI	CATG	3 cut(s)	427, 919, 1004
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	423, 915, 1000
Fnu4HI	GCNGC	3 cut(s)	323, 1020, 1263
FokI	GGATG	2 cut(s)	937, 1038
FriOI	GRGCYC	3 cut(s)	9, 143, 1210
Fsp4HI	GCNGC	3 cut(s)	323, 1020, 1263
FspBI	CTAG	5 cut(s)	38, 350, 932, 1043, 1112
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	3 cut(s)	323, 1020, 1263
HaeIII	GGCC	1 cut(s)	141
HgaI	GACGC	1 cut(s)	1167
HhaI	GCGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	1159
Hin1II	CATG	3 cut(s)	427, 919, 1004
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	8 cut(s)	24, 166, 539, 818, 947, 960, 1004, 1071
Hpy166II	GTNNAC	2 cut(s)	337, 970
Hpy188I	TCNGA	7 cut(s)	23, 110, 204, 223, 446, 880, 1280
Hpy188III	TCNNGA	4 cut(s)	719, 1055, 1068, 1075
Hpy8I	GTNNAC	2 cut(s)	337, 970
Hpy99I	CGWCG	1 cut(s)	1161
HpyAV	CCTTC	7 cut(s)	105, 159, 349, 405, 575, 751, 851
HpyCH4III	ACNGT	3 cut(s)	85, 290, 838
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	8 cut(s)	127, 181, 488, 895, 978, 995, 1203, 1221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 138, 553
HpyF3I	CTNAG	9 cut(s)	174, 201, 443, 492, 557, 637, 681, 707, 1266
HpySE526I	ACGT	1 cut(s)	302
Hsp92I	GRCGYC	1 cut(s)	1159
Hsp92II	CATG	3 cut(s)	427, 919, 1004
HspAI	GCGC	1 cut(s)	545
Kzo9I	GATC	3 cut(s)	446, 752, 886
LmnI	GCTCC	5 cut(s)	4, 111, 123, 424, 911
Lsp1109I	GCAGC	3 cut(s)	334, 1006, 1249
LweI	GCATC	4 cut(s)	141, 168, 1026, 1105
MaeI	CTAG	5 cut(s)	38, 350, 932, 1043, 1112
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	2 cut(s)	465, 920
MalI	GATC	3 cut(s)	448, 754, 888
MboI	GATC	3 cut(s)	446, 752, 886
MboII	GAAGA	5 cut(s)	24, 59, 247, 707, 864
MfeI	CAATTG	1 cut(s)	1133
MflI	RGATCY	2 cut(s)	446, 886
MhlI	GDGCHC	3 cut(s)	9, 143, 1210
MluCI	AATT	8 cut(s)	224, 294, 438, 480, 763, 1120, 1133, 1253
MlyI	GAGTC	3 cut(s)	33, 548, 827
MmeI	TCCRAC	2 cut(s)	214, 516
MnlI	CCTC	8 cut(s)	96, 263, 312, 562, 584, 755, 764, 1033
MseI	TTAA	4 cut(s)	293, 609, 626, 899
MslI	CAYNNNNRTG	2 cut(s)	330, 826
MspA1I	CMGCKG	1 cut(s)	641
MunI	CAATTG	1 cut(s)	1133
MvnI	CGCG	1 cut(s)	849
MwoI	GCNNNNNNNGC	3 cut(s)	124, 138, 553
NdeII	GATC	3 cut(s)	446, 752, 886
NlaIII	CATG	3 cut(s)	427, 919, 1004
NlaIV	GGNNCC	3 cut(s)	107, 141, 913
NmuCI	GTSAC	1 cut(s)	920
NspV	TTCGAA	1 cut(s)	267
PfeI	GAWTC	5 cut(s)	166, 947, 960, 1004, 1071
PflFI	GACNNNGTC	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	324, 1021, 1264
PleI	GAGTC	3 cut(s)	32, 547, 826
PpsI	GAGTC	3 cut(s)	32, 547, 826
Ppu21I	YACGTR	1 cut(s)	303
Psp124BI	GAGCTC	2 cut(s)	9, 1210
PspN4I	GGNNCC	3 cut(s)	107, 141, 913
PspOMI	GGGCCC	1 cut(s)	139
PspPI	GGNCC	4 cut(s)	139, 140, 1077, 1246
PsuI	RGATCY	2 cut(s)	446, 886
PsyI	GACNNNGTC	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	641
RseI	CAYNNNNRTG	2 cut(s)	330, 826
SacI	GAGCTC	2 cut(s)	9, 1210
SaqAI	TTAA	4 cut(s)	293, 609, 626, 899
SatI	GCNGC	3 cut(s)	323, 1020, 1263
Sau3AI	GATC	3 cut(s)	446, 752, 886
Sau96I	GGNCC	4 cut(s)	139, 140, 1077, 1246
SchI	GAGTC	3 cut(s)	33, 548, 827
SduI	GDGCHC	3 cut(s)	9, 143, 1210
SfaNI	GCATC	4 cut(s)	141, 168, 1026, 1105
SfuI	TTCGAA	1 cut(s)	267
SinI	GGWCC	2 cut(s)	1077, 1246
SmiMI	CAYNNNNRTG	2 cut(s)	330, 826
SmlI	CTYRAG	1 cut(s)	1150
SmoI	CTYRAG	1 cut(s)	1150
Sse9I	AATT	8 cut(s)	224, 294, 438, 480, 763, 1120, 1133, 1253
SspI	AATATT	1 cut(s)	903
SspMI	CTAG	5 cut(s)	38, 350, 932, 1043, 1112
SstI	GAGCTC	2 cut(s)	9, 1210
StyI	CCWWGG	1 cut(s)	931
TaaI	ACNGT	3 cut(s)	85, 290, 838
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	2 cut(s)	267, 1069
TaqII	GACCGA	1 cut(s)	1094
TasI	AATT	8 cut(s)	224, 294, 438, 480, 763, 1120, 1133, 1253
TfiI	GAWTC	5 cut(s)	166, 947, 960, 1004, 1071
Tru1I	TTAA	4 cut(s)	293, 609, 626, 899
Tru9I	TTAA	4 cut(s)	293, 609, 626, 899
TscAI	CASTG	3 cut(s)	278, 374, 1015
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	3 cut(s)	322, 1019, 1262
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	5 cut(s)	59, 377, 939, 952, 1017
TspGWI	ACGGA	2 cut(s)	88, 1118
TspRI	CASTG	3 cut(s)	278, 374, 1015
Tth111I	GACNNNGTC	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	1077, 1246
XapI	RAATTY	3 cut(s)	224, 438, 1253
XmaJI	CCTAGG	1 cut(s)	931
XspI	CTAG	5 cut(s)	38, 350, 932, 1043, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.