Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004647

Physical Location & Seq

Genomic Coordinates Reverse (-)

47919236 .. 47993192

Gene Structure 73957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAGCTCTCTCTTCATTTCAGAATCGTTTCTTCCCTAGTTCTTTTGGGACTGGTTGGCTTCTTTCTTCATCTCTACAACACAGTCTGGTTGAAGTCCGAGAGGGTCAGAAGGAAGCTCCAAATGCAAGGCATCAAAGGCCCTACACCTTCTTTACTGTATGGGAATCTCGCTGAGATGCAGAAAATAATCCAACTCCAAGCTCAGAAGTCTTCAAATCACTCAGAATTTGTAGCCCACGACTACACTTCCAGTCTCTTCCCCTATTTCGAACACTGGAGAAAAGAATACGGATTAATTTACACGTATTCAACAGGAATGAGGCAGCATTTATATGTGAACCAACCAGAGCTAGTCAAGGAAATGAACCGGTGTATTAGTTTGGATTTAGGTAAGCCTTCATATGTAAGCAAGAGACTTGCTCCCATGCTTGGAAATGGAATTCTCAGATCCAACGGCATTGTTTGGTCACAACAAAGAAAAATTGTTGCACCTGAGTTCTTCACAGACAAAGTCAAGGCGATGGTAGGGTTGATGTTGGAGTCGGCGCAACCATTGCTTAGAAAATGGGAGGAGTGTATTGAAGGACAAGGAGGTATGAGAGCAGAGATTCAAGTAGATGAGCATTTAAGGGGTTTCTCAGCTGATGTTATCGCAAGGGCTTGTTTTGGGAGTTCTTATTCTAAGGGCAAAGAGATTTTCTCAAAGCTTAGAAGTCTTCAGGAAATAATGTCTCATCAACCCTTCCTCTTTGGATCATTTTCTAATTTAGGAGGGTTGAAAAAGCAAAAGGAGATAAGTTGTTTAGAGAGAGAGATAGAGTCATTGATATGGGAAACTGTGAAAGAACGCGAACGAGAAGGGTTAGAGACTTCTTCGTCAGAAAAGGATCTATTGCAGTTAATATTAGTGGGAGCCATGAGTGACCAAAGCCTAGGCAAAGGCAAGGATTCATCCAAGCGATTCATAGTTGACAACTGCAAGAACATTTATTTTGCAGGGCATGAATCCACTGGTGTTGCTGCCTCTTGGTGTTTGATGCTACTCGCTTTACATCCCGAGTGGCAATCTCGAATCAGGACCGAGTTGGCAGAAGTTTGCCCCGATGGTCAGCTAGATGCTAATTCACTCCCTCAATTGAAAACGGTACAAGTCTTTGCATTTAGTCTTTTATCTTCACTTATCTTGGCGGACATGAAGTTTCTTATCCCCAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009690 GO:0009691 GO:0009987 GO:0010817 GO:0016491 GO:0018130 GO:0019438 GO:0033397 GO:0033398 GO:0033400 GO:0033466 GO:0034641 GO:0034754 GO:0042445 GO:0042446 GO:0044237 GO:0044249 GO:0044271 GO:0046483 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072521 GO:0072522 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

406

Amino Acids

46.1

Weight (kDa)

8.8

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	85 - 381	2.2e-33	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004647)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24900 AT5G24900 AT5G24910 AT5G24910
fragaria_vesca	FvH4_7g26340 FvH4_7g26340 FvH4_7g26340 FvH4_7g26340
malus_domestica	MD01G1172500.v1.1 MD07G1238800.v1.1
prunus_persica	Prupe.2G267600_v2.0.a1 Prupe.2G267600_v2.0.a1
pyrus_communis	pycom01g18400 pycom07g21480
rosa_chinensis	RchiOBHm_Chr1g0372801 RchiOBHm_Chr1g0372871
rosa_laevigata	RLG00000026870 RLG00000026871
rosa_multiflora	Rmu_sc0009717.1_g000003 Rmu_sc0011206.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284660 Rroxscaffold_4G00284680
rosa_rugosa	Rorug01G0374400
rosa_samantha	Rh1AG383200 Rh1BG346900 Rh1CG360300 Rh1CG360400 Rh1DG377800 Rh1DG377900
rosa_wichuraiana	Rw1G033740 Rw1G033750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	877
AccII	CGCG	1 cut(s)	852
AciI	CCGC	1 cut(s)	1190
AclWI	GGATC	3 cut(s)	444, 763, 897
AcsI	RAATTY	2 cut(s)	227, 441
AcuI	CTGAAG	1 cut(s)	704
AfaI	GTAC	1 cut(s)	1149
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	303
AgeI	ACCGGT	1 cut(s)	369
AgsI	TTSAA	7 cut(s)	94, 216, 312, 584, 614, 781, 1141
AluBI	AGCT	7 cut(s)	7, 118, 203, 352, 644, 709, 1114
AluI	AGCT	7 cut(s)	7, 118, 203, 352, 644, 709, 1114
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	4 cut(s)	260, 409, 738, 863
AlwI	GGATC	3 cut(s)	444, 763, 897
Ama87I	CYCGRG	1 cut(s)	1058
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	325, 1022
ApoI	RAATTY	2 cut(s)	227, 441
AseI	ATTAAT	1 cut(s)	296
AsiGI	ACCGGT	1 cut(s)	369
Asp700I	GAANNNNTTC	1 cut(s)	28
AspA2I	CCTAGG	1 cut(s)	934
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	140, 1080
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	1058
AvaII	GGWCC	1 cut(s)	1080
AvrII	CCTAGG	1 cut(s)	934
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	204, 710
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	337, 1009
BccI	CCATC	2 cut(s)	517, 1100
BceAI	ACGGC	1 cut(s)	472
BcoDI	GTCTC	4 cut(s)	260, 409, 738, 863
BfaI	CTAG	4 cut(s)	38, 353, 935, 1115
BisI	GCNGC	2 cut(s)	326, 1023
BlnI	CCTAGG	1 cut(s)	934
BlsI	GCNGC	2 cut(s)	327, 1024
Bme18I	GGWCC	1 cut(s)	1080
BmeT110I	CYCGRG	1 cut(s)	1058
BmgT120I	GGNCC	2 cut(s)	140, 1080
BmiI	GGNNCC	1 cut(s)	916
BmsI	GCATC	4 cut(s)	141, 168, 1029, 1108
BpiI	GAAGAC	2 cut(s)	204, 710
BplI	GAGNNNNNCTC	4 cut(s)	406, 438, 686, 718
BpmI	CTGGAG	1 cut(s)	298
Bpu14I	TTCGAA	1 cut(s)	270
BsaAI	YACGTR	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	934
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse118I	RCCGGY	1 cut(s)	369
Bse1I	ACTGG	4 cut(s)	57, 252, 281, 1018
Bse3DI	GCAATG	1 cut(s)	554
BseDI	CCNNGG	1 cut(s)	934
BseGI	GGATG	2 cut(s)	953, 1054
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	6 cut(s)	165, 218, 237, 460, 486, 654
BseNI	ACTGG	4 cut(s)	57, 252, 281, 1018
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	2 cut(s)	337, 1009
Bsh1236I	CGCG	1 cut(s)	852
BshFI	GGCC	1 cut(s)	141
BshTI	ACCGGT	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	1 cut(s)	1058
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	4 cut(s)	260, 409, 738, 863
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	141
BsoBI	CYCGRG	1 cut(s)	1058
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	449, 755, 889
BspACI	CCGC	1 cut(s)	1190
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	6 cut(s)	166, 217, 236, 459, 487, 653
BspFNI	CGCG	1 cut(s)	852
BspLI	GGNNCC	1 cut(s)	916
BspPI	GGATC	3 cut(s)	444, 763, 897
BspT104I	TTCGAA	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	369
BsrI	ACTGG	4 cut(s)	57, 252, 281, 1018
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	934
BssMI	GATC	3 cut(s)	449, 755, 889
BssT1I	CCWWGG	1 cut(s)	934
Bst4CI	ACNGT	4 cut(s)	85, 159, 841, 1147
Bst6I	CTCTTC	2 cut(s)	18, 263
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstBAI	YACGTR	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	270
BstDEI	CTNAG	9 cut(s)	174, 204, 223, 446, 495, 560, 640, 684, 710
BstF5I	GGATG	2 cut(s)	953, 1054
BstFNI	CGCG	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	3 cut(s)	452, 758, 892
BstMAI	GTCTC	4 cut(s)	260, 409, 738, 863
BstMBI	GATC	3 cut(s)	449, 755, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 138, 556
BstUI	CGCG	1 cut(s)	852
BstV1I	GCAGC	2 cut(s)	337, 1009
BstV2I	GAAGAC	2 cut(s)	204, 710
BstX2I	RGATCY	2 cut(s)	449, 889
BstYI	RGATCY	2 cut(s)	449, 889
BsuRI	GGCC	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	536
BtsCI	GGATG	2 cut(s)	953, 1054
BtsIMutI	CAGTG	2 cut(s)	274, 1011
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	140, 1080
Csp6I	GTAC	1 cut(s)	1148
CspAI	ACCGGT	1 cut(s)	369
CspCI	CAANNNNNGTGG	2 cut(s)	1000, 1035
CviAII	CATG	4 cut(s)	427, 919, 1004, 1195
CviQI	GTAC	1 cut(s)	1148
DdeI	CTNAG	9 cut(s)	174, 204, 223, 446, 495, 560, 640, 684, 710
DpnI	GATC	3 cut(s)	451, 757, 891
DpnII	GATC	3 cut(s)	449, 755, 889
DrdI	GACNNNNNNGTC	1 cut(s)	877
DseDI	GACNNNNNNGTC	1 cut(s)	877
Eam1104I	CTCTTC	2 cut(s)	18, 263
EarI	CTCTTC	2 cut(s)	18, 263
EciI	GGCGGA	1 cut(s)	1205
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	934
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	1080
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	704
Eco88I	CYCGRG	1 cut(s)	1058
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	934
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	934
FaeI	CATG	4 cut(s)	430, 922, 1007, 1198
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	4 cut(s)	426, 918, 1003, 1194
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	326, 1023
FokI	GGATG	2 cut(s)	940, 1041
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	326, 1023
FspBI	CTAG	4 cut(s)	38, 353, 935, 1115
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	2 cut(s)	326, 1023
GsuI	CTGGAG	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	370
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	4 cut(s)	430, 922, 1007, 1198
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	9 cut(s)	24, 166, 542, 610, 821, 950, 963, 1007, 1074
HpaII	CCGG	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	340, 973
Hpy188I	TCNGA	7 cut(s)	23, 100, 110, 207, 226, 449, 883
Hpy188III	TCNNGA	4 cut(s)	722, 1058, 1071, 1078
Hpy8I	GTNNAC	2 cut(s)	340, 973
HpyAV	CCTTC	6 cut(s)	105, 159, 408, 578, 754, 854
HpyCH4III	ACNGT	4 cut(s)	85, 159, 841, 1147
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	7 cut(s)	127, 181, 491, 898, 981, 998, 1160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 138, 556
HpyF3I	CTNAG	9 cut(s)	174, 204, 223, 446, 495, 560, 640, 684, 710
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	430, 922, 1007, 1198
HspAI	GCGC	1 cut(s)	548
Kzo9I	GATC	3 cut(s)	449, 755, 889
LmnI	GCTCC	4 cut(s)	4, 123, 427, 914
Lsp1109I	GCAGC	2 cut(s)	337, 1009
LweI	GCATC	4 cut(s)	141, 168, 1029, 1108
MaeI	CTAG	4 cut(s)	38, 353, 935, 1115
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	468, 923
MalI	GATC	3 cut(s)	451, 757, 891
MboI	GATC	3 cut(s)	449, 755, 889
MboII	GAAGA	9 cut(s)	5, 24, 59, 204, 250, 493, 710, 867, 1167
MfeI	CAATTG	1 cut(s)	1136
MflI	RGATCY	2 cut(s)	449, 889
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	8 cut(s)	227, 297, 441, 483, 766, 1123, 1136, 1216
MlyI	GAGTC	2 cut(s)	551, 830
MmeI	TCCRAC	3 cut(s)	217, 477, 519
MnlI	CCTC	8 cut(s)	96, 315, 565, 587, 758, 767, 1036, 1143
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	3 cut(s)	296, 629, 902
MslI	CAYNNNNRTG	2 cut(s)	333, 829
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	1 cut(s)	370
MunI	CAATTG	1 cut(s)	1136
MvnI	CGCG	1 cut(s)	852
MwoI	GCNNNNNNNGC	3 cut(s)	124, 138, 556
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	3 cut(s)	449, 755, 889
NlaIII	CATG	4 cut(s)	430, 922, 1007, 1198
NlaIV	GGNNCC	1 cut(s)	916
NmuCI	GTSAC	2 cut(s)	468, 923
NspV	TTCGAA	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	7 cut(s)	24, 166, 610, 950, 963, 1007, 1074
PflFI	GACNNNGTC	1 cut(s)	512
PinAI	ACCGGT	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	327, 1024
PleI	GAGTC	2 cut(s)	550, 829
PpsI	GAGTC	2 cut(s)	550, 829
Ppu21I	YACGTR	1 cut(s)	306
PshBI	ATTAAT	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	916
PspPI	GGNCC	2 cut(s)	140, 1080
PsuI	RGATCY	2 cut(s)	449, 889
PsyI	GACNNNGTC	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	1 cut(s)	1149
RsaNI	GTAC	1 cut(s)	1148
RseI	CAYNNNNRTG	2 cut(s)	333, 829
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	296, 629, 902
SatI	GCNGC	2 cut(s)	326, 1023
Sau3AI	GATC	3 cut(s)	449, 755, 889
Sau96I	GGNCC	2 cut(s)	140, 1080
SchI	GAGTC	2 cut(s)	551, 830
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	4 cut(s)	141, 168, 1029, 1108
SfuI	TTCGAA	1 cut(s)	270
SinI	GGWCC	1 cut(s)	1080
SmiMI	CAYNNNNRTG	2 cut(s)	333, 829
Sse9I	AATT	8 cut(s)	227, 297, 441, 483, 766, 1123, 1136, 1216
SsiI	CCGC	1 cut(s)	1190
SspI	AATATT	1 cut(s)	906
SspMI	CTAG	4 cut(s)	38, 353, 935, 1115
SstI	GAGCTC	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	934
TaaI	ACNGT	4 cut(s)	85, 159, 841, 1147
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	270, 1072
TaqII	GACCGA	1 cut(s)	1097
TasI	AATT	8 cut(s)	227, 297, 441, 483, 766, 1123, 1136, 1216
TfiI	GAWTC	7 cut(s)	24, 166, 610, 950, 963, 1007, 1074
Tru1I	TTAA	3 cut(s)	296, 629, 902
Tru9I	TTAA	3 cut(s)	296, 629, 902
TscAI	CASTG	2 cut(s)	281, 1018
TseFI	GTSAC	2 cut(s)	468, 923
TseI	GCWGC	2 cut(s)	325, 1022
Tsp45I	GTSAC	2 cut(s)	468, 923
TspDTI	ATGAA	8 cut(s)	5, 59, 380, 390, 942, 955, 1020, 1211
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	281, 1018
Tth111I	GACNNNGTC	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	1080
VspI	ATTAAT	1 cut(s)	296
XapI	RAATTY	2 cut(s)	227, 441
XmaJI	CCTAGG	1 cut(s)	934
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	4 cut(s)	38, 353, 935, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.