AT5G25190

ethylene-responsive

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013409
Physical Location & Seq
Reverse (-)
8706745 .. 8707885
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25190.1

Sequence Viewer

Length: 546 bp
ATGGCACGACCACAACAACGCTTTCGAGGCGTTAGACAGAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGTCACCCTCTCTTGAAAACAAGAATCTGGCTAGGGACGTTTGAGACAGCGGAGGATGCAGCAAGGGCCTACGACGAGGCGGCTAGGCTAATGTGTGGCCCGAGAGCTCGTACTAATTTCCCATACAACCCTAATGCCATTCCTACTTCCTCTTCCAAGCTTCTATCAGCAACTCTTACCGCTAAACTCCACAAATGCTACATGGCTTCTCTTCAAATGACCAAGCAAACGCAAACACAAACGCAAACGCAGACCGCAAGATCACAATCCGCGGACAGTGACGGTGTGACGGCTAACGAAAGTCATTTGAACAGAGGAGTAACGGAGACGACAGAGATCAAGTGGGAAGATGGAAATGCGAATATGCAACAGAATTTTAGGCCATTGGAGGAAGATCATATCGAGCAAATGATTGAGGAGCTGCTTCACTACGGTTCCATTGAGCTTTGCTCTGTTTTACCAACTCAGACGCTGTGA

Protein Analysis

181

Amino Acids

20.61

Weight (kDa)

7.02

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 7 - 56 4.1e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25190
fragaria_vesca FvH4_2g40810
malus_domestica MD08G1060000.v1.1 MD15G1036500.v1.1
prunus_persica Prupe.1G390800_v2.0.a1
pyrus_communis pycom08g05000 pycom15g03390
rosa_chinensis RchiOBHm_Chr6g0299771
rosa_laevigata RLG00000011390
rosa_multiflora Rmu_co8448481.1_g000001 Rmu_sc0002895.1_g000027
rosa_roxburghii Rroxscaffold_7G00168390
rosa_rugosa Rorug06G0292100
rosa_samantha Rh6AG403100 Rh6BG411600 Rh6CG417700 Rh6DG404500
rosa_wichuraiana Rw6G035280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 341
AciI CCGC 6 cut(s) 119, 149, 249, 324, 339, 341
AcsI RAATTY 2 cut(s) 66, 442
AfaI GTAC 1 cut(s) 181
AgsI TTSAA 3 cut(s) 85, 284, 379
AluBI AGCT 4 cut(s) 176, 229, 490, 514
AluI AGCT 4 cut(s) 176, 229, 490, 514
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 3 cut(s) 64, 107, 389
AlwNI CAGNNNCTG 1 cut(s) 541
Ama87I CYCGRG 1 cut(s) 169
AoxI GGCC 3 cut(s) 135, 166, 449
ApeKI GCWGC 2 cut(s) 128, 490
ApoI RAATTY 2 cut(s) 66, 442
AspS9I GGNCC 2 cut(s) 135, 167
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 169
BanII GRGCYC 2 cut(s) 53, 178
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 140, 477
BccI CCATC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 375
BcoDI GTCTC 3 cut(s) 64, 107, 389
BfaI CTAG 2 cut(s) 101, 153
BisI GCNGC 3 cut(s) 129, 150, 491
BlsI GCNGC 3 cut(s) 130, 151, 492
BmeT110I CYCGRG 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 135, 167
BmiI GGNNCC 1 cut(s) 505
BmsI GCATC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BsaBI GATNNNNATC 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 334
BseRI GAGGAG 2 cut(s) 399, 500
BseXI GCAGC 2 cut(s) 140, 477
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 3 cut(s) 137, 168, 451
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 118
BsmAI GTCTC 3 cut(s) 64, 107, 389
BsmBI CGTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 3 cut(s) 137, 168, 451
Bso31I GGTCTC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 53, 178
Bsp143I GATC 3 cut(s) 329, 405, 463
BspACI CCGC 6 cut(s) 119, 149, 249, 324, 339, 341
BspANI GGCC 3 cut(s) 137, 168, 451
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 3 cut(s) 329, 405, 463
Bst4CI ACNGT 3 cut(s) 347, 353, 503
Bst6I CTCTTC 2 cut(s) 226, 285
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 341
BstKTI GATC 3 cut(s) 332, 408, 466
BstMAI GTCTC 3 cut(s) 64, 107, 389
BstMBI GATC 3 cut(s) 329, 405, 463
BstMWI GCNNNNNNNGC 3 cut(s) 27, 125, 134
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 140, 477
BsuRI GGCC 3 cut(s) 137, 168, 451
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 352
CaiI CAGNNNCTG 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 135, 167
Cfr42I CCGCGG 1 cut(s) 342
Csp6I GTAC 1 cut(s) 180
CviAII CATG 1 cut(s) 271
CviQI GTAC 1 cut(s) 180
DdeI CTNAG 1 cut(s) 534
DpnI GATC 3 cut(s) 331, 407, 465
DpnII GATC 3 cut(s) 329, 405, 463
Eam1104I CTCTTC 2 cut(s) 226, 285
EarI CTCTTC 2 cut(s) 226, 285
Ecl136II GAGCTC 1 cut(s) 176
Eco24I GRGCYC 2 cut(s) 53, 178
Eco31I GGTCTC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 169
EcoICRI GAGCTC 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 135
EcoT38I GRGCYC 2 cut(s) 53, 178
Esp3I CGTCTC 1 cut(s) 389
FaeI CATG 1 cut(s) 274
FaiI YATR 4 cut(s) 193, 272, 434, 468
FaqI GGGAC 1 cut(s) 118
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 129, 150, 491
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 2 cut(s) 53, 178
Fsp4HI GCNGC 3 cut(s) 129, 150, 491
FspBI CTAG 2 cut(s) 101, 153
GluI GCNGC 3 cut(s) 129, 150, 491
HaeIII GGCC 3 cut(s) 137, 168, 451
Hin1II CATG 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 93
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 64, 537
Hpy188III TCNNGA 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 146
HpyCH4III ACNGT 3 cut(s) 347, 353, 503
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 128, 436
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 125, 134
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 1 cut(s) 274
KspI CCGCGG 1 cut(s) 342
Kzo9I GATC 3 cut(s) 329, 405, 463
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 1 cut(s) 82
Lsp1109I GCAGC 2 cut(s) 140, 477
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 101, 153
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 4 cut(s) 71, 347, 355, 388
MalI GATC 3 cut(s) 331, 407, 465
MboI GATC 3 cut(s) 329, 405, 463
MboII GAAGA 4 cut(s) 213, 272, 428, 473
MhlI GDGCHC 2 cut(s) 53, 178
MluCI AATT 3 cut(s) 66, 184, 442
MnlI CCTC 9 cut(s) 20, 33, 87, 115, 139, 229, 377, 451, 478
MspA1I CMGCKG 2 cut(s) 119, 341
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 27, 125, 134
NdeII GATC 3 cut(s) 329, 405, 463
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 505
NmuCI GTSAC 3 cut(s) 71, 347, 355
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 3 cut(s) 130, 151, 492
Psp124BI GAGCTC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 505
PspPI GGNCC 2 cut(s) 135, 167
PstNI CAGNNNCTG 1 cut(s) 541
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
SacI GAGCTC 1 cut(s) 178
SacII CCGCGG 1 cut(s) 342
SatI GCNGC 3 cut(s) 129, 150, 491
Sau3AI GATC 3 cut(s) 329, 405, 463
Sau96I GGNCC 2 cut(s) 135, 167
SduI GDGCHC 2 cut(s) 53, 178
SetI ASST 5 cut(s) 110, 178, 231, 492, 516
SfaNI GCATC 1 cut(s) 115
Sfr303I CCGCGG 1 cut(s) 342
SgrBI CCGCGG 1 cut(s) 342
Sse9I AATT 3 cut(s) 66, 184, 442
SsiI CCGC 6 cut(s) 119, 149, 249, 324, 339, 341
SspMI CTAG 2 cut(s) 101, 153
SstI GAGCTC 1 cut(s) 178
TaaI ACNGT 3 cut(s) 347, 353, 503
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 25, 471
TasI AATT 3 cut(s) 66, 184, 442
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 93
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 3 cut(s) 71, 347, 355
TseI GCWGC 2 cut(s) 128, 490
Tsp45I GTSAC 3 cut(s) 71, 347, 355
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 1 cut(s) 352
XapI RAATTY 2 cut(s) 66, 442
XspI CTAG 2 cut(s) 101, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.