Rh6BG411600

Ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013409
Physical Location & Seq
Reverse (-)
63718110 .. 63719998
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG411600.1

Sequence Viewer

Length: 843 bp
ATGCAGGGTTTACACACGAAAACTCAACTGATGGGACCCATTCTCTTCAATTTATTTGTCTTTTGGGCAATCCCCAACTACAATTTAAGGGCCAGAGAGGGGACTAGTCTCTTCCCTTCCTCAAAGACACCAGCTTCACTCTCACAAAGAAACACACAGACATTTCCCATTTTCCACCATACACTTTCAGAAAGAAACGTTCTTTTGCTTTGCTGCACAGCAATGGCAAGACCCCAGCAACGATACCGAGGCGTACGACAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGCCACCCTTTACTAAAGACTAGAATTTGGTTGGGAACATTTGAGACGGCTGAAGACGCAGCCAGGGCTTATGATGAAGCTGCCAGGCTTATGTGCGGACCTAGAGCCAGGACCAACTTCCCTTACAACCCAAATGCGTCTCAGTCCTCTGCCTCAAAGCTTCTCTCCCAAACTTTGACGGCTAAACTCCACAGGTGCTACATGGCTTCACTCCAAATGACCAAATCAACCCCACTCAAGCAGCCCAGCAAGCCCCAGCTGTCCTATGTTGACACAAAAAATGTTGGCATTGCTGAGAATGAGAAACCCAGCATTGAAGTGCCAGAGAAGAAACCAGCACTAACAGCTGAGCCTAAACAAGAACAAGAGCAAGAGCCAAATTGGGGATTTGTGAATAAAGTCAAAGTGGAGAGCACCCAAGATGAAGAATCCATAGAGCCTCTTGAAGATGACCACATTGAGCAGATGATTGAGGAGTTGCTCCATTATGGGTCCATTGAGCTATGCTCTGTTGTCACACCACCACAACCACCTCAGGCCTCTCTAATTTAA

Protein Analysis

280

Amino Acids

31.8

Weight (kDa)

8.23

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 81 - 130 3.6e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013409)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G25190
fragaria_vesca FvH4_2g40810
malus_domestica MD08G1060000.v1.1 MD15G1036500.v1.1
prunus_persica Prupe.1G390800_v2.0.a1
pyrus_communis pycom08g05000 pycom15g03390
rosa_chinensis RchiOBHm_Chr6g0299771
rosa_laevigata RLG00000011390
rosa_multiflora Rmu_co8448481.1_g000001 Rmu_sc0002895.1_g000027
rosa_roxburghii Rroxscaffold_7G00168390
rosa_rugosa Rorug06G0292100
rosa_samantha Rh6AG403100 Rh6BG411600 Rh6CG417700 Rh6DG404500
rosa_wichuraiana Rw6G035280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 387
AclI AACGTT 1 cut(s) 198
AcsI RAATTY 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 2 cut(s) 99, 674
AgsI TTSAA 3 cut(s) 49, 608, 737
AhlI ACTAGT 1 cut(s) 104
AjnI CCWGG 3 cut(s) 353, 374, 398
AluBI AGCT 6 cut(s) 134, 371, 451, 550, 638, 793
AluI AGCT 6 cut(s) 134, 371, 451, 550, 638, 793
Alw21I GWGCWC 1 cut(s) 707
Alw26I GTCTC 4 cut(s) 113, 286, 329, 435
AoxI GGCC 2 cut(s) 90, 828
ApeKI GCWGC 4 cut(s) 213, 350, 371, 532
ApoI RAATTY 1 cut(s) 315
AspS9I GGNCC 5 cut(s) 35, 90, 389, 402, 783
AvaII GGWCC 4 cut(s) 35, 389, 402, 783
AxyI CCTNAGG 1 cut(s) 825
BanII GRGCYC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 4 cut(s) 200, 358, 362, 544
BccI CCATC 1 cut(s) 25
BceAI ACGGC 2 cut(s) 354, 486
BciT130I CCWGG 3 cut(s) 355, 376, 400
BcoDI GTCTC 4 cut(s) 113, 286, 329, 435
BcuI ACTAGT 1 cut(s) 104
BfaI CTAG 3 cut(s) 105, 312, 393
BisI GCNGC 4 cut(s) 214, 351, 372, 533
BlpI GCTNAGC 1 cut(s) 639
BlsI GCNGC 4 cut(s) 215, 352, 373, 534
Bme1390I CCNGG 3 cut(s) 355, 376, 400
Bme18I GGWCC 4 cut(s) 35, 389, 402, 783
BmgT120I GGNCC 5 cut(s) 35, 90, 389, 402, 783
BmiI GGNNCC 3 cut(s) 36, 37, 784
BmrFI CCNGG 3 cut(s) 355, 376, 400
BpiI GAAGAC 1 cut(s) 351
BplI GAGNNNNNCTC 2 cut(s) 782, 814
Bpu1102I GCTNAGC 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 286
BsaJI CCNNGG 2 cut(s) 247, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 674
Bse21I CCTNAGG 1 cut(s) 825
Bse3DI GCAATG 2 cut(s) 228, 579
BseBI CCWGG 3 cut(s) 355, 376, 400
BseDI CCNNGG 2 cut(s) 247, 354
BseLI CCNNNNNNNGG 2 cut(s) 99, 674
BseMI GCAATG 2 cut(s) 228, 579
BseMII CTCAG 5 cut(s) 276, 446, 576, 630, 839
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 4 cut(s) 200, 358, 362, 544
BseYI CCCAGC 4 cut(s) 234, 536, 546, 599
BsgI GTGCAG 1 cut(s) 199
BshFI GGCC 2 cut(s) 92, 830
BsiHKAI GWGCWC 1 cut(s) 707
BsiWI CGTACG 1 cut(s) 253
BslFI GGGAC 2 cut(s) 48, 115
BslI CCNNNNNNNGG 2 cut(s) 99, 674
BsmAI GTCTC 4 cut(s) 113, 286, 329, 435
BsmBI CGTCTC 2 cut(s) 329, 435
BsmFI GGGAC 2 cut(s) 48, 115
BsnI GGCC 2 cut(s) 92, 830
Bso31I GGTCTC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 275, 707
Bsp1720I GCTNAGC 1 cut(s) 639
BspACI CCGC 1 cut(s) 387
BspANI GGCC 2 cut(s) 92, 830
BspCNI CTCAG 5 cut(s) 277, 445, 577, 631, 838
BspLI GGNNCC 3 cut(s) 36, 37, 784
BspTNI GGTCTC 1 cut(s) 286
BsrDI GCAATG 2 cut(s) 228, 579
BssECI CCNNGG 2 cut(s) 247, 354
Bst2UI CCWGG 3 cut(s) 355, 376, 400
Bst6I CTCTTC 2 cut(s) 50, 116
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 5 cut(s) 285, 432, 585, 639, 825
BstMAI GTCTC 4 cut(s) 113, 286, 329, 435
BstMWI GCNNNNNNNGC 4 cut(s) 347, 356, 541, 635
BstNI CCWGG 3 cut(s) 355, 376, 400
BstSCI CCNGG 3 cut(s) 353, 374, 398
BstV1I GCAGC 4 cut(s) 200, 358, 362, 544
BstV2I GAAGAC 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 825
BsuRI GGCC 2 cut(s) 92, 830
Cac8I GCNNGC 1 cut(s) 542
Cfr13I GGNCC 5 cut(s) 35, 90, 389, 402, 783
CseI GACGC 2 cut(s) 356, 417
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 493
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 5 cut(s) 285, 432, 585, 639, 825
Eam1104I CTCTTC 2 cut(s) 50, 116
EarI CTCTTC 2 cut(s) 50, 116
Eco147I AGGCCT 1 cut(s) 830
Eco24I GRGCYC 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 286
Eco47I GGWCC 4 cut(s) 35, 389, 402, 783
Eco57I CTGAAG 1 cut(s) 363
Eco81I CCTNAGG 1 cut(s) 825
EcoO109I RGGNCCY 1 cut(s) 35
EcoRII CCWGG 3 cut(s) 353, 374, 398
EcoT38I GRGCYC 1 cut(s) 275
Esp3I CGTCTC 2 cut(s) 329, 435
FaeI CATG 1 cut(s) 496
FaiI YATR 8 cut(s) 180, 363, 383, 494, 558, 725, 780, 796
FaqI GGGAC 2 cut(s) 48, 115
FatI CATG 1 cut(s) 492
Fnu4HI GCNGC 4 cut(s) 214, 351, 372, 533
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 4 cut(s) 214, 351, 372, 533
FspBI CTAG 3 cut(s) 105, 312, 393
GluI GCNGC 4 cut(s) 214, 351, 372, 533
GsaI CCCAGC 4 cut(s) 238, 540, 550, 603
HaeIII GGCC 2 cut(s) 92, 830
HgaI GACGC 2 cut(s) 356, 417
Hin1II CATG 1 cut(s) 496
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 2 cut(s) 289, 719
Hpy166II GTNNAC 2 cut(s) 11, 562
Hpy188I TCNGA 2 cut(s) 190, 286
Hpy188III TCNNGA 1 cut(s) 734
Hpy8I GTNNAC 2 cut(s) 11, 562
HpyAV CCTTC 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 4, 216
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 356, 541, 635
HpyF3I CTNAG 5 cut(s) 285, 432, 585, 639, 825
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 1 cut(s) 496
KflI GGGWCCC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 777
Lsp1109I GCAGC 4 cut(s) 200, 358, 362, 544
MaeI CTAG 3 cut(s) 105, 312, 393
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 805
MboII GAAGA 6 cut(s) 37, 103, 356, 631, 728, 749
MhlI GDGCHC 2 cut(s) 275, 707
MluCI AATT 5 cut(s) 49, 82, 315, 670, 837
MnlI CCTC 9 cut(s) 91, 130, 242, 448, 454, 741, 757, 834, 841
MseI TTAA 2 cut(s) 86, 841
MslI CAYNNNNRTG 2 cut(s) 221, 608
MspA1I CMGCKG 2 cut(s) 550, 638
MspR9I CCNGG 3 cut(s) 355, 376, 400
MvaI CCWGG 3 cut(s) 355, 376, 400
MwoI GCNNNNNNNGC 4 cut(s) 347, 356, 541, 635
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 3 cut(s) 36, 37, 784
NmuCI GTSAC 1 cut(s) 805
PceI AGGCCT 1 cut(s) 830
PfeI GAWTC 2 cut(s) 289, 719
Pfl23II CGTACG 1 cut(s) 253
PkrI GCNGC 4 cut(s) 215, 352, 373, 534
PpuMI RGGWCCY 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 35
Psp6I CCWGG 3 cut(s) 353, 374, 398
PspFI CCCAGC 4 cut(s) 234, 536, 546, 599
PspGI CCWGG 3 cut(s) 353, 374, 398
PspLI CGTACG 1 cut(s) 253
PspN4I GGNNCC 3 cut(s) 36, 37, 784
PspPI GGNCC 5 cut(s) 35, 90, 389, 402, 783
PspPPI RGGWCCY 1 cut(s) 35
PvuII CAGCTG 2 cut(s) 550, 638
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 2 cut(s) 221, 608
SaqAI TTAA 2 cut(s) 86, 841
SatI GCNGC 4 cut(s) 214, 351, 372, 533
Sau96I GGNCC 5 cut(s) 35, 90, 389, 402, 783
ScrFI CCNGG 3 cut(s) 355, 376, 400
SduI GDGCHC 2 cut(s) 275, 707
SinI GGWCC 4 cut(s) 35, 389, 402, 783
SmiMI CAYNNNNRTG 2 cut(s) 221, 608
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SpeI ACTAGT 1 cut(s) 104
Sse9I AATT 5 cut(s) 49, 82, 315, 670, 837
SseBI AGGCCT 1 cut(s) 830
SsiI CCGC 1 cut(s) 387
SspMI CTAG 3 cut(s) 105, 312, 393
StuI AGGCCT 1 cut(s) 830
StyD4I CCNGG 3 cut(s) 353, 374, 398
TaiI ACGT 1 cut(s) 201
TasI AATT 5 cut(s) 49, 82, 315, 670, 837
TfiI GAWTC 2 cut(s) 289, 719
Tru1I TTAA 2 cut(s) 86, 841
Tru9I TTAA 2 cut(s) 86, 841
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 4 cut(s) 213, 350, 371, 532
Tsp45I GTSAC 1 cut(s) 805
TspDTI ATGAA 2 cut(s) 381, 729
VpaK11BI GGWCC 4 cut(s) 35, 389, 402, 783
XapI RAATTY 1 cut(s) 315
XspI CTAG 3 cut(s) 105, 312, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.