Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013409

Physical Location & Seq

Genomic Coordinates Forward (+)

34842031 .. 34843343

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G390800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCAAGACCGCAACAGCGGTTTCGAGGTGTGCGACAAAGGCACTGGGGCTCTTGGGTCTCCGAAATCCGCCACCCTTTATTAAAGACTAGAATTTGGCTAGGAACATTTGAAACGGCTGAAGACGCAGCCAGAGCTTATGATGAAGCGGCAAGGCTTATGTGCGGACCAAGGGCAAGGACCAATTTCCCTTATAACCCAAATGCATCTCAGTCCTCAGCCTCAAAGCTTCTGTCAGCAACTTTGACAGCAAAACTGCATAGATGCTACATGGCTTCCCTCCAAATGACCAAAACATCCCTACAGGAGCCTAAAAAACCACAACCTTGTTTCGTTGACACAAAAAATGACAATGCTGAGAAGGCAATTGAACTGGGCATGAACTTTCCAGAGAAAAAACCAGAAACTCATCATGAGCAAGAAGAACCAGAAGAGACGATGAATTGGGTTTTCAGTAAAGTTAAAGTAGAAAGCAGCCAGCAACAGTTCAAGCCTCTTGAAGATGATCACATTGAGCAGATGATTGAGGAGTTGCTTCATTATGGGTCCATTGAGCTATGCTCTGCTGTAGCACCACAAGCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

196

Amino Acids

22.41

Weight (kDa)

6.66

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0013409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25190
fragaria_vesca	FvH4_2g40810
malus_domestica	MD08G1060000.v1.1 MD15G1036500.v1.1
prunus_persica	Prupe.1G390800_v2.0.a1
pyrus_communis	pycom08g05000 pycom15g03390
rosa_chinensis	RchiOBHm_Chr6g0299771
rosa_laevigata	RLG00000011390
rosa_multiflora	Rmu_co8448481.1_g000001 Rmu_sc0002895.1_g000027
rosa_roxburghii	Rroxscaffold_7G00168390
rosa_rugosa	Rorug06G0292100
rosa_samantha	Rh6AG403100 Rh6BG411600 Rh6CG417700 Rh6DG404500
rosa_wichuraiana	Rw6G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AciI	CCGC	5 cut(s)	11, 19, 70, 149, 165
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	141
AgsI	TTSAA	4 cut(s)	113, 371, 490, 500
AluBI	AGCT	3 cut(s)	137, 229, 556
AluI	AGCT	3 cut(s)	137, 229, 556
Alw26I	GTCTC	2 cut(s)	64, 428
ApeKI	GCWGC	2 cut(s)	128, 474
ApoI	RAATTY	1 cut(s)	93
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspS9I	GGNCC	3 cut(s)	167, 180, 546
AvaII	GGWCC	3 cut(s)	167, 180, 546
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	129
BbvCI	CCTCAGC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	140, 486
BceAI	ACGGC	1 cut(s)	132
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	64, 428
BfaI	CTAG	2 cut(s)	90, 101
BfmI	CTRYAG	2 cut(s)	302, 567
BisI	GCNGC	3 cut(s)	129, 150, 475
BlsI	GCNGC	3 cut(s)	130, 151, 476
Bme18I	GGWCC	3 cut(s)	167, 180, 546
BmgT120I	GGNCC	3 cut(s)	167, 180, 546
BmiI	GGNNCC	2 cut(s)	309, 547
BmrI	ACTGGG	2 cut(s)	55, 383
BmsI	GCATC	2 cut(s)	215, 254
BmuI	ACTGGG	2 cut(s)	55, 383
BpiI	GAAGAC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
Bpu10I	CCTNAGC	1 cut(s)	217
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	50, 378
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	296
BseMII	CTCAG	3 cut(s)	224, 231, 348
BseNI	ACTGG	2 cut(s)	50, 378
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	140, 486
BsmAI	GTCTC	2 cut(s)	64, 428
BsmBI	CGTCTC	1 cut(s)	428
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	505
BspACI	CCGC	5 cut(s)	11, 19, 70, 149, 165
BspCNI	CTCAG	3 cut(s)	223, 230, 349
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	309, 547
BspTNI	GGTCTC	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	50, 378
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	3 cut(s)	210, 217, 357
BstF5I	GGATG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	2 cut(s)	64, 428
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 125, 134, 362, 578
BstSFI	CTRYAG	2 cut(s)	302, 567
BstV1I	GCAGC	2 cut(s)	140, 486
BstV2I	GAAGAC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	479
CciI	TCATGA	1 cut(s)	412
Cfr13I	GGNCC	3 cut(s)	167, 180, 546
CseI	GACGC	1 cut(s)	134
CviAII	CATG	3 cut(s)	271, 379, 413
DdeI	CTNAG	3 cut(s)	210, 217, 357
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	3 cut(s)	167, 180, 546
Eco57I	CTGAAG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	170
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	3 cut(s)	274, 382, 416
FaiI	YATR	9 cut(s)	141, 161, 195, 261, 272, 380, 414, 543, 559
FatI	CATG	3 cut(s)	270, 378, 412
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	129, 150, 475
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	129, 150, 475
FspBI	CTAG	2 cut(s)	90, 101
GluI	GCNGC	3 cut(s)	129, 150, 475
HgaI	GACGC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	274, 382, 416
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	3 cut(s)	389, 413, 497
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4V	TGCA	2 cut(s)	206, 259
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 125, 134, 362, 578
HpyF3I	CTNAG	3 cut(s)	210, 217, 357
Hsp92II	CATG	3 cut(s)	274, 382, 416
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	8 cut(s)	31, 145, 290, 359, 402, 414, 441, 491
Lsp1109I	GCAGC	2 cut(s)	140, 486
LweI	GCATC	2 cut(s)	215, 254
MaeI	CTAG	2 cut(s)	90, 101
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	4 cut(s)	134, 434, 443, 512
MfeI	CAATTG	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	4 cut(s)	93, 184, 366, 442
MnlI	CCTC	6 cut(s)	20, 226, 232, 290, 504, 520
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	3 cut(s)	83, 462, 586
MspA1I	CMGCKG	1 cut(s)	19
MunI	CAATTG	1 cut(s)	366
MwoI	GCNNNNNNNGC	5 cut(s)	40, 125, 134, 362, 578
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	3 cut(s)	274, 382, 416
NlaIV	GGNNCC	2 cut(s)	309, 547
NsiI	ATGCAT	1 cut(s)	208
PagI	TCATGA	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	130, 151, 476
PsiI	TTATAA	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	309, 547
PspPI	GGNCC	3 cut(s)	167, 180, 546
SaqAI	TTAA	3 cut(s)	83, 462, 586
SatI	GCNGC	3 cut(s)	129, 150, 475
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	3 cut(s)	167, 180, 546
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	5 cut(s)	31, 139, 231, 328, 558
SfaNI	GCATC	2 cut(s)	215, 254
SfcI	CTRYAG	2 cut(s)	302, 567
SinI	GGWCC	3 cut(s)	167, 180, 546
Sse9I	AATT	4 cut(s)	93, 184, 366, 442
SsiI	CCGC	5 cut(s)	11, 19, 70, 149, 165
SspMI	CTAG	2 cut(s)	90, 101
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	25
TasI	AATT	4 cut(s)	93, 184, 366, 442
TauI	GCSGC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	83, 462, 586
Tru9I	TTAA	3 cut(s)	83, 462, 586
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	2 cut(s)	128, 474
TspDTI	ATGAA	4 cut(s)	159, 395, 455, 527
TspRI	CASTG	1 cut(s)	50
VpaK11BI	GGWCC	3 cut(s)	167, 180, 546
XapI	RAATTY	1 cut(s)	93
XspI	CTAG	2 cut(s)	90, 101
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.