Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0013409

Physical Location & Seq

Genomic Coordinates Reverse (-)

4774052 .. 4775469

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1060000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGAGACCCCAACAGCGATATCGAGGCGTCCGACAAAGGCACTGGGGCTCTTGGGTCTCCGAAATCCGCCACCCTTTATTGAAGACTAGAATTTGGCTGGGAACGTTCGAAACAGCGGAAGACGCAGCGAGGGCTTACGACGAGGCGGCGAGGCTAATGTGCGGGCCTAGAGCAAGAACAAACTTCCCTTATAACCCGAATGCGTCTCAGTCCTCGGCCTCGAAACTTCTCTCGGCAACTTTGACAGCAAAACTGCACAGATGCTACATGGCTTCACTCCAGATGACCAAAACTTCACTGCAAGAGCCAAAAAAGCCGCAAGCTTTAGCGTCATCGGGCGCGAAAATGCCGGATATCAAACCGGAAATTCATCAACCAGTAGCCGAGGAAAATTGGGTTGTGAGGGAAGTAAAAGTAGAGAGTAGCAGCCAGCAGTTCAAGCCACTTGAAGATGATCACATTGAGCAGATGATTGAGGAGTTGCTGCATTACGGTTCCATTGAATTATGCTCTGTTTTGCCACCACAAGCTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

180

Amino Acids

20.34

Weight (kDa)

8.79

Isoelectric Point (pI)

62.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	7 - 56	1.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25190
fragaria_vesca	FvH4_2g40810
malus_domestica	MD08G1060000.v1.1 MD15G1036500.v1.1
prunus_persica	Prupe.1G390800_v2.0.a1
pyrus_communis	pycom08g05000 pycom15g03390
rosa_chinensis	RchiOBHm_Chr6g0299771
rosa_laevigata	RLG00000011390
rosa_multiflora	Rmu_co8448481.1_g000001 Rmu_sc0002895.1_g000027
rosa_roxburghii	Rroxscaffold_7G00168390
rosa_rugosa	Rorug06G0292100
rosa_samantha	Rh6AG403100 Rh6BG411600 Rh6CG417700 Rh6DG404500
rosa_wichuraiana	Rw6G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AccII	CGCG	1 cut(s)	344
AciI	CCGC	5 cut(s)	70, 119, 149, 165, 320
AclI	AACGTT	1 cut(s)	107
AcsI	RAATTY	2 cut(s)	93, 369
AcyI	GRCGYC	1 cut(s)	30
AgsI	TTSAA	4 cut(s)	85, 442, 452, 506
AluBI	AGCT	2 cut(s)	326, 533
AluI	AGCT	2 cut(s)	326, 533
Alw26I	GTCTC	2 cut(s)	64, 213
AoxI	GGCC	2 cut(s)	167, 219
ApeKI	GCWGC	3 cut(s)	128, 429, 487
ApoI	RAATTY	2 cut(s)	93, 369
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	92, 129
BbvI	GCAGC	3 cut(s)	140, 441, 474
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	64, 213
BfaI	CTAG	2 cut(s)	90, 171
BisI	GCNGC	5 cut(s)	129, 150, 320, 430, 488
BlsI	GCNGC	5 cut(s)	130, 151, 321, 431, 489
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	499
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	2 cut(s)	92, 129
BpmI	CTGGAG	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	216, 387
BsaWI	WCCGGW	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	50, 380
BseDI	CCNNGG	2 cut(s)	216, 387
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	50, 380
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	3 cut(s)	140, 441, 474
BseYI	CCCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	169, 221
BsiSI	CCGG	2 cut(s)	353, 365
BsmAI	GTCTC	2 cut(s)	64, 213
BsmBI	CGTCTC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	169, 221
Bso31I	GGTCTC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	5 cut(s)	70, 119, 149, 165, 320
BspANI	GGCC	2 cut(s)	169, 221
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	499
BspT104I	TTCGAA	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	50, 380
BssECI	CCNNGG	2 cut(s)	216, 387
BssMI	GATC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	167, 324, 434
BstDEI	CTNAG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	64, 213
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 134, 316, 442
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	140, 441, 474
BstV2I	GAAGAC	2 cut(s)	92, 129
BsuRI	GGCC	2 cut(s)	169, 221
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	2 cut(s)	43, 299
Cac8I	GCNNGC	3 cut(s)	167, 324, 434
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	4 cut(s)	19, 134, 195, 321
CviAII	CATG	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EciI	GGCGGA	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	64
Eco32I	GATATC	2 cut(s)	23, 358
EcoRV	GATATC	2 cut(s)	23, 358
EcoT38I	GRGCYC	1 cut(s)	53
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	195, 272, 511
FatI	CATG	1 cut(s)	270
FauI	CCCGC	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	129, 150, 320, 430, 488
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	5 cut(s)	129, 150, 320, 430, 488
FspBI	CTAG	2 cut(s)	90, 171
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	5 cut(s)	129, 150, 320, 430, 488
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	169, 221
HapII	CCGG	2 cut(s)	353, 365
HgaI	GACGC	4 cut(s)	19, 134, 195, 321
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	324
HpaII	CCGG	2 cut(s)	353, 365
Hpy188I	TCNGA	2 cut(s)	35, 64
Hpy188III	TCNNGA	1 cut(s)	283
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	3 cut(s)	259, 304, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 134, 316, 442
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	107
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	457
LpnPI	CCDG	7 cut(s)	31, 86, 296, 366, 378, 393, 446
Lsp1109I	GCAGC	3 cut(s)	140, 441, 474
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	90, 171
MaeII	ACGT	1 cut(s)	107
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	3 cut(s)	97, 134, 464
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	4 cut(s)	93, 369, 394, 506
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	9 cut(s)	20, 126, 139, 147, 226, 232, 382, 399, 472
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	2 cut(s)	353, 365
Mva1269I	GAATGC	1 cut(s)	208
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	125, 134, 316, 442
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	499
NmeAIII	GCCGAG	3 cut(s)	197, 215, 412
NspV	TTCGAA	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PctI	GAATGC	1 cut(s)	208
PkrI	GCNGC	5 cut(s)	130, 151, 321, 431, 489
PsiI	TTATAA	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	167
SatI	GCNGC	5 cut(s)	129, 150, 320, 430, 488
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	4 cut(s)	110, 328, 535, 539
SfaNI	GCATC	1 cut(s)	254
SfuI	TTCGAA	1 cut(s)	111
Sse9I	AATT	4 cut(s)	93, 369, 394, 506
SsiI	CCGC	5 cut(s)	70, 119, 149, 165, 320
SspMI	CTAG	2 cut(s)	90, 171
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	3 cut(s)	25, 111, 224
TasI	AATT	4 cut(s)	93, 369, 394, 506
TauI	GCSGC	2 cut(s)	152, 322
TscAI	CASTG	2 cut(s)	50, 306
TseI	GCWGC	3 cut(s)	128, 429, 487
TspDTI	ATGAA	1 cut(s)	362
TspRI	CASTG	2 cut(s)	50, 306
XapI	RAATTY	2 cut(s)	93, 369
XspI	CTAG	2 cut(s)	90, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.