Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0013409

Physical Location & Seq

Genomic Coordinates Reverse (-)

59851444 .. 59852187

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAAGACCCCAGCAACGATACCGAGGCGTACGACAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGCCACCCTTTACTAAAGACTAGAATTTGGTTGGGAACATTTGAGACGGCTGAAGACGCAGCCAGGGCTTATGATGAAGCTGCCAGGCTTATGTGCGGACCCAGAGCCAGGACCAACTTCCCTTACAACCCAAATGCGTCTCAGTCCTCTGCCTCAAAGCTTCTCTCCCAAACTTTGACGGCTAAACTCCACAGGTGCTACATGGCTTCACTCCAAATGACCAAATCAACCCCACTCAAGCAGCCCAGCAAGCCCCAGCTGTCCTATGTTGACACAAAAAATGTTGGCATTGCTGAGAATGAGAAACCCAGCATTGAAGTGCCAGAGAAGAAACCAGCACTAACAGCTGAGCCTAAACAAGAACAAGAGCAAGAGCAAGAGCCAAATTGGGGATTTGTGAATAAAGTCAAAGTGGAGAGCACCCAAGATGAAGAATCCATAGAGCCTCTTGAAGATGACCACATTGAGCAGATGATTGAGGAGTTGCTCCATTATGGATCCATTGAGCTATGCTCTGTTGTCACACCACCACAACCACCTCAGGCCTCTCTAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

208

Amino Acids

23.67

Weight (kDa)

6.0

Isoelectric Point (pI)

64.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	7 - 56	2.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25190
fragaria_vesca	FvH4_2g40810
malus_domestica	MD08G1060000.v1.1 MD15G1036500.v1.1
prunus_persica	Prupe.1G390800_v2.0.a1
pyrus_communis	pycom08g05000 pycom15g03390
rosa_chinensis	RchiOBHm_Chr6g0299771
rosa_laevigata	RLG00000011390
rosa_multiflora	Rmu_co8448481.1_g000001 Rmu_sc0002895.1_g000027
rosa_roxburghii	Rroxscaffold_7G00168390
rosa_rugosa	Rorug06G0292100
rosa_samantha	Rh6AG403100 Rh6BG411600 Rh6CG417700 Rh6DG404500
rosa_wichuraiana	Rw6G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	2 cut(s)	561, 574
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	177, 458
AgsI	TTSAA	2 cut(s)	386, 521
AjnI	CCWGG	3 cut(s)	131, 152, 176
AluBI	AGCT	5 cut(s)	149, 229, 328, 416, 577
AluI	AGCT	5 cut(s)	149, 229, 328, 416, 577
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	3 cut(s)	64, 107, 213
AlwI	GGATC	2 cut(s)	561, 574
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	3 cut(s)	128, 149, 310
ApoI	RAATTY	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	167, 180
AvaII	GGWCC	2 cut(s)	167, 180
AxyI	CCTNAGG	1 cut(s)	609
BamHI	GGATCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	3 cut(s)	136, 140, 322
BceAI	ACGGC	2 cut(s)	132, 264
BciT130I	CCWGG	3 cut(s)	133, 154, 178
BcoDI	GTCTC	3 cut(s)	64, 107, 213
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	3 cut(s)	129, 150, 311
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	3 cut(s)	130, 151, 312
Bme1390I	CCNGG	3 cut(s)	133, 154, 178
Bme18I	GGWCC	2 cut(s)	167, 180
BmgT120I	GGNCC	2 cut(s)	167, 180
BmiI	GGNNCC	2 cut(s)	169, 568
BmrFI	CCNGG	3 cut(s)	133, 154, 178
BpiI	GAAGAC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	566, 598
Bpu1102I	GCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	25, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 458
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	133, 154, 178
BseDI	CCNNGG	2 cut(s)	25, 132
BseLI	CCNNNNNNNGG	2 cut(s)	177, 458
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	5 cut(s)	54, 224, 354, 408, 623
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	3 cut(s)	136, 140, 322
BseYI	CCCAGC	4 cut(s)	12, 314, 324, 377
BshFI	GGCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	491
BsiWI	CGTACG	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	177, 458
BsmAI	GTCTC	3 cut(s)	64, 107, 213
BsmBI	CGTCTC	2 cut(s)	107, 213
BsnI	GGCC	1 cut(s)	614
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	53, 491
Bsp143I	GATC	1 cut(s)	566
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	5 cut(s)	55, 223, 355, 409, 622
BspLI	GGNNCC	2 cut(s)	169, 568
BspPI	GGATC	2 cut(s)	561, 574
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	25, 132
BssMI	GATC	1 cut(s)	566
Bst2UI	CCWGG	3 cut(s)	133, 154, 178
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	5 cut(s)	63, 210, 363, 417, 609
BstKTI	GATC	1 cut(s)	569
BstMAI	GTCTC	3 cut(s)	64, 107, 213
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 134, 319, 413
BstNI	CCWGG	3 cut(s)	133, 154, 178
BstSCI	CCNGG	3 cut(s)	131, 152, 176
BstV1I	GCAGC	3 cut(s)	136, 140, 322
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	1 cut(s)	614
Cac8I	GCNNGC	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	167, 180
CseI	GACGC	2 cut(s)	134, 195
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	1 cut(s)	271
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	5 cut(s)	63, 210, 363, 417, 609
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
Eco147I	AGGCCT	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	167, 180
Eco57I	CTGAAG	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	609
EcoRII	CCWGG	3 cut(s)	131, 152, 176
EcoT38I	GRGCYC	1 cut(s)	53
Esp3I	CGTCTC	2 cut(s)	107, 213
FaeI	CATG	1 cut(s)	274
FaiI	YATR	7 cut(s)	141, 161, 272, 336, 509, 564, 580
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	129, 150, 311
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	129, 150, 311
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	3 cut(s)	129, 150, 311
GsaI	CCCAGC	4 cut(s)	16, 318, 328, 381
HaeIII	GGCC	1 cut(s)	614
HgaI	GACGC	2 cut(s)	134, 195
Hin1II	CATG	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	2 cut(s)	67, 503
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 134, 319, 413
HpyF3I	CTNAG	5 cut(s)	63, 210, 363, 417, 609
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	566
LmnI	GCTCC	1 cut(s)	561
Lsp1109I	GCAGC	3 cut(s)	136, 140, 322
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	4 cut(s)	134, 409, 512, 533
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	2 cut(s)	53, 491
MluCI	AATT	3 cut(s)	93, 454, 621
MnlI	CCTC	7 cut(s)	20, 226, 232, 525, 541, 618, 625
MseI	TTAA	1 cut(s)	625
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	2 cut(s)	328, 416
MspR9I	CCNGG	3 cut(s)	133, 154, 178
MvaI	CCWGG	3 cut(s)	133, 154, 178
MwoI	GCNNNNNNNGC	4 cut(s)	125, 134, 319, 413
NdeII	GATC	1 cut(s)	566
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	169, 568
NmuCI	GTSAC	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	614
PfeI	GAWTC	2 cut(s)	67, 503
Pfl23II	CGTACG	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	130, 151, 312
Psp6I	CCWGG	3 cut(s)	131, 152, 176
PspFI	CCCAGC	4 cut(s)	12, 314, 324, 377
PspGI	CCWGG	3 cut(s)	131, 152, 176
PspLI	CGTACG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	169, 568
PspPI	GGNCC	2 cut(s)	167, 180
PsuI	RGATCY	1 cut(s)	566
PvuII	CAGCTG	2 cut(s)	328, 416
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	625
SatI	GCNGC	3 cut(s)	129, 150, 311
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	2 cut(s)	167, 180
ScrFI	CCNGG	3 cut(s)	133, 154, 178
SduI	GDGCHC	2 cut(s)	53, 491
SetI	ASST	7 cut(s)	151, 231, 266, 330, 418, 579, 610
SinI	GGWCC	2 cut(s)	167, 180
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	93, 454, 621
SseBI	AGGCCT	1 cut(s)	614
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	614
StyD4I	CCNGG	3 cut(s)	131, 152, 176
TasI	AATT	3 cut(s)	93, 454, 621
TfiI	GAWTC	2 cut(s)	67, 503
Tru1I	TTAA	1 cut(s)	625
Tru9I	TTAA	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	3 cut(s)	128, 149, 310
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	159, 513
VpaK11BI	GGWCC	2 cut(s)	167, 180
XapI	RAATTY	1 cut(s)	93
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.