Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013409

Physical Location & Seq

Genomic Coordinates Forward (+)

29006685 .. 29007974

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCAAGACCGCAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTACTAAAGACTAGAATTTGGTTGGGAACATTTGAGACGGCTGAAGACGCAGCCAGGGCATATGATGAAGCTGCCAGGCTTATGTGCGGACCAAGAGCCAGGACCAATTTCCCTTACAACCCAAATGCGTCTCAGTCCTCTGCCTCAAAGCTTCTCTCCCAGACTTTGACGGCTAAGCTACACAGGTGCTACATGGCTTCACTCCAAATGACCAAATCAACCTCACTTAAGCAGCCCAGCAAGCCCCAGCTTTCCTTTGTTGACACCAAAAATGTTGGCATTGTTGAGGATGAGAAACCGAGCATCCAAGTTCCAGAGAAAAAACCAGCCGTGCCAGAGGAGCCTAAACAAGAACAAGAAGAAGAGCCAAATTGGGGATTTGTGAATAAAGTCAAAGTGGAGAGCACCCAAGATGAAGAATCCATAGAGCGTCTTGAAGATGACCACATTGAGCAGATGATCGAGGAGTTGCTCCATTATGGGTCGATTGAGCTATGCTCTGTTCAGTCTGTTGTGACACCACCACAAACACCTCAGGCCTCTCTAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

210

Amino Acids

23.83

Weight (kDa)

6.01

Isoelectric Point (pI)

64.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	7 - 56	2.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25190
fragaria_vesca	FvH4_2g40810
malus_domestica	MD08G1060000.v1.1 MD15G1036500.v1.1
prunus_persica	Prupe.1G390800_v2.0.a1
pyrus_communis	pycom08g05000 pycom15g03390
rosa_chinensis	RchiOBHm_Chr6g0299771
rosa_laevigata	RLG00000011390
rosa_multiflora	Rmu_co8448481.1_g000001 Rmu_sc0002895.1_g000027
rosa_roxburghii	Rroxscaffold_7G00168390
rosa_rugosa	Rorug06G0292100
rosa_samantha	Rh6AG403100 Rh6BG411600 Rh6CG417700 Rh6DG404500
rosa_wichuraiana	Rw6G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 165
AcsI	RAATTY	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	515
AjnI	CCWGG	3 cut(s)	131, 152, 176
AluBI	AGCT	5 cut(s)	149, 229, 256, 328, 571
AluI	AGCT	5 cut(s)	149, 229, 256, 328, 571
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	3 cut(s)	64, 107, 213
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	3 cut(s)	128, 149, 310
ApoI	RAATTY	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	167, 180
AsuHPI	GGTGA	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	167, 180
AxyI	CCTNAGG	1 cut(s)	612
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	136, 140, 322
BceAI	ACGGC	3 cut(s)	132, 264, 392
BciT130I	CCWGG	3 cut(s)	133, 154, 178
BcoDI	GTCTC	3 cut(s)	64, 107, 213
BfaI	CTAG	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	3 cut(s)	129, 150, 311
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	3 cut(s)	130, 151, 312
Bme1390I	CCNGG	3 cut(s)	133, 154, 178
Bme18I	GGWCC	2 cut(s)	167, 180
BmgT120I	GGNCC	2 cut(s)	167, 180
BmiI	GGNNCC	1 cut(s)	420
BmrFI	CCNGG	3 cut(s)	133, 154, 178
BmsI	GCATC	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	560, 592
Bpu1102I	GCTNAGC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	25, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse21I	CCTNAGG	1 cut(s)	612
BseBI	CCWGG	3 cut(s)	133, 154, 178
BseDI	CCNNGG	2 cut(s)	25, 132
BseGI	GGATG	2 cut(s)	373, 381
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	3 cut(s)	54, 224, 626
BseRI	GAGGAG	2 cut(s)	431, 557
BseXI	GCAGC	3 cut(s)	136, 140, 322
BseYI	CCCAGC	2 cut(s)	314, 324
BshFI	GGCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	3 cut(s)	64, 107, 213
BsmBI	CGTCTC	2 cut(s)	107, 213
BsnI	GGCC	1 cut(s)	617
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	2 cut(s)	53, 485
Bsp143I	GATC	1 cut(s)	537
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	11, 165
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	3 cut(s)	55, 223, 625
BspLI	GGNNCC	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	435
BspTI	CTTAAG	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	25, 132
BssMI	GATC	1 cut(s)	537
Bst2UI	CCWGG	3 cut(s)	133, 154, 178
Bst6I	CTCTTC	1 cut(s)	435
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	320
BstDEI	CTNAG	4 cut(s)	63, 210, 252, 612
BstF5I	GGATG	2 cut(s)	373, 381
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	3 cut(s)	64, 107, 213
BstMBI	GATC	1 cut(s)	537
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 134, 319, 418
BstNI	CCWGG	3 cut(s)	133, 154, 178
BstSCI	CCNGG	3 cut(s)	131, 152, 176
BstV1I	GCAGC	3 cut(s)	136, 140, 322
BstV2I	GAAGAC	1 cut(s)	129
Bsu36I	CCTNAGG	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	617
BtsCI	GGATG	2 cut(s)	373, 381
Cac8I	GCNNGC	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	167, 180
CseI	GACGC	3 cut(s)	134, 195, 497
CviAII	CATG	1 cut(s)	271
DdeI	CTNAG	4 cut(s)	63, 210, 252, 612
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco147I	AGGCCT	1 cut(s)	617
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	167, 180
Eco57I	CTGAAG	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	612
EcoRII	CCWGG	3 cut(s)	131, 152, 176
EcoT38I	GRGCYC	1 cut(s)	53
Esp3I	CGTCTC	2 cut(s)	107, 213
FaeI	CATG	1 cut(s)	274
FaiI	YATR	7 cut(s)	139, 141, 161, 272, 503, 558, 574
FatI	CATG	1 cut(s)	270
FauNDI	CATATG	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	129, 150, 311
FokI	GGATG	2 cut(s)	368, 380
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	129, 150, 311
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	3 cut(s)	129, 150, 311
GsaI	CCCAGC	2 cut(s)	318, 328
HaeIII	GGCC	1 cut(s)	617
HgaI	GACGC	3 cut(s)	134, 195, 497
Hin1II	CATG	1 cut(s)	274
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	2 cut(s)	67, 497
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	35, 64
Hpy188III	TCNNGA	2 cut(s)	392, 512
Hpy8I	GTNNAC	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 134, 319, 418
HpyF3I	CTNAG	4 cut(s)	63, 210, 252, 612
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	1 cut(s)	537
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	418, 555
Lsp1109I	GCAGC	3 cut(s)	136, 140, 322
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	71, 592
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	5 cut(s)	134, 449, 452, 506, 527
MhlI	GDGCHC	2 cut(s)	53, 485
MluCI	AATT	3 cut(s)	93, 184, 448
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	9 cut(s)	20, 226, 232, 310, 358, 409, 535, 621, 628
MseI	TTAA	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	305
MspR9I	CCNGG	3 cut(s)	133, 154, 178
MvaI	CCWGG	3 cut(s)	133, 154, 178
MwoI	GCNNNNNNNGC	4 cut(s)	125, 134, 319, 418
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	71, 592
PceI	AGGCCT	1 cut(s)	617
PciSI	GCTCTTC	1 cut(s)	435
PfeI	GAWTC	2 cut(s)	67, 497
PkrI	GCNGC	3 cut(s)	130, 151, 312
Psp6I	CCWGG	3 cut(s)	131, 152, 176
PspFI	CCCAGC	2 cut(s)	314, 324
PspGI	CCWGG	3 cut(s)	131, 152, 176
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	2 cut(s)	167, 180
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	129, 150, 311
Sau3AI	GATC	1 cut(s)	537
Sau96I	GGNCC	2 cut(s)	167, 180
ScrFI	CCNGG	3 cut(s)	133, 154, 178
SduI	GDGCHC	2 cut(s)	53, 485
SetI	ASST	9 cut(s)	31, 151, 231, 258, 266, 302, 330, 573, 613
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	2 cut(s)	167, 180
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	93, 184, 448
SseBI	AGGCCT	1 cut(s)	617
SsiI	CCGC	2 cut(s)	11, 165
SspMI	CTAG	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	617
StyD4I	CCNGG	3 cut(s)	131, 152, 176
TaqI	TCGA	2 cut(s)	540, 563
TasI	AATT	3 cut(s)	93, 184, 448
TfiI	GAWTC	2 cut(s)	67, 497
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	2 cut(s)	71, 592
TseI	GCWGC	3 cut(s)	128, 149, 310
Tsp45I	GTSAC	2 cut(s)	71, 592
TspDTI	ATGAA	2 cut(s)	159, 507
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	167, 180
XapI	RAATTY	1 cut(s)	93
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.