Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Forward (+)

9617440 .. 9618481

Gene Structure 1042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAAGCTACCTCTCTAAGCTCTGCAGCAACAATCATCTCCTCCTCATCTTCCCCACTCTCCATATTCTCTCCAAAGAAGCGAACAGACTCATCACCTCCCCCGAGAATCGTCCGTCTCTCGAACAAGAAGGAAGACAAAGATTACGATCCGCAACATTCCGAATCGAACTCATCAAGCCTCTTCCGGAATCGAACTCTCTCCAATGATGAAGCAATGGGACTGGTGTTGAGTGCAGCTTCGGTTAAAGGATGGACAACCGGTTCCGGTATGGAAGGACCGTCTCTACCGGCTAAAACCGATACAGACACGGTTTCCACATTTCCATGGTCATTATTCACTAAATCGCCTCGTAGGCGAATGCGTGTTGCTTTCACTTGTAACGTATGTGGGCAAAGAACTACAAGAGCTATTAATCCTCATGCTTACACTGATGGCACTGTCTTCGTGCAGTGTTGTGGATGTAATGTGTTTCATAAGCTGGTCGATAATCTCAACTTGTTTCATGAGGTTAAGTATTATGTGAGCAGCTCGAGCTTCGATTACACCGATGCTAAGTGGGATGTTAGCGGCTTGAATCTTTTCGATGATGAGGATGATGATAATGCTGGTGATAGCAATGATGTCTTTCCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

212

Amino Acids

23.32

Weight (kDa)

5.55

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	123 - 172	6.6e-17	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	2 cut(s)	152, 570
AclWI	GGATC	1 cut(s)	143
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	577
AloI	GAACNNNNNNTCC	2 cut(s)	247, 279
AluBI	AGCT	7 cut(s)	8, 21, 239, 410, 481, 531, 537
AluI	AGCT	7 cut(s)	8, 21, 239, 410, 481, 531, 537
Alw26I	GTCTC	2 cut(s)	122, 288
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	2 cut(s)	103, 532
Aor13HI	TCCGGA	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	26, 236, 528
AseI	ATTAAT	1 cut(s)	414
AsiGI	ACCGGT	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	581
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	2 cut(s)	87, 623
AvaI	CYCGRG	2 cut(s)	103, 532
AvaII	GGWCC	1 cut(s)	278
BbsI	GAAGAC	2 cut(s)	141, 436
BbvI	GCAGC	3 cut(s)	38, 248, 540
BccI	CCATC	2 cut(s)	246, 428
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BcoDI	GTCTC	2 cut(s)	122, 288
BfmI	CTRYAG	1 cut(s)	24
BglI	GCCNNNNNGGC	1 cut(s)	355
BisI	GCNGC	4 cut(s)	27, 237, 529, 571
BlsI	GCNGC	4 cut(s)	28, 238, 530, 572
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	2 cut(s)	103, 532
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	1 cut(s)	541
BpiI	GAAGAC	2 cut(s)	141, 436
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	326
BsaWI	WCCGGW	3 cut(s)	186, 260, 266
Bse118I	RCCGGY	2 cut(s)	260, 289
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	2 cut(s)	222, 625
Bse8I	GATNNNNATC	1 cut(s)	147
BseAI	TCCGGA	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	4 cut(s)	257, 467, 568, 601
BseJI	GATNNNNATC	1 cut(s)	147
BseMI	GCAATG	2 cut(s)	222, 625
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	2 cut(s)	31, 34
BseXI	GCAGC	3 cut(s)	38, 248, 540
BsgI	GTGCAG	2 cut(s)	255, 470
BshTI	ACCGGT	1 cut(s)	260
BsiHKCI	CYCGRG	2 cut(s)	103, 532
BsiSI	CCGG	4 cut(s)	187, 261, 267, 290
BslFI	GGGAC	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	122, 288
BsmBI	CGTCTC	2 cut(s)	122, 288
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	366
BsoBI	CYCGRG	2 cut(s)	103, 532
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	148
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	2 cut(s)	152, 570
BspEI	TCCGGA	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	222, 625
BsrFI	RCCGGY	2 cut(s)	260, 289
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	2 cut(s)	260, 289
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	282, 313, 442
Bst6I	CTCTTC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	17, 555
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	4 cut(s)	257, 467, 568, 601
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	2 cut(s)	122, 288
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 534
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	38, 248, 540
BstV2I	GAAGAC	2 cut(s)	141, 436
BtgI	CCRYGG	1 cut(s)	326
BtsCI	GGATG	4 cut(s)	257, 467, 568, 601
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	3 cut(s)	429, 438, 458
CciI	TCATGA	1 cut(s)	505
Cfr10I	RCCGGY	2 cut(s)	260, 289
Cfr13I	GGNCC	1 cut(s)	278
CspAI	ACCGGT	1 cut(s)	260
CviAII	CATG	3 cut(s)	327, 422, 506
DdeI	CTNAG	2 cut(s)	17, 555
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	103, 532
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
Esp3I	CGTCTC	2 cut(s)	122, 288
FaeI	CATG	3 cut(s)	330, 425, 509
FaiI	YATR	8 cut(s)	65, 272, 328, 388, 423, 477, 507, 522
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	3 cut(s)	326, 421, 505
Fnu4HI	GCNGC	4 cut(s)	27, 237, 529, 571
FokI	GGATG	4 cut(s)	264, 474, 575, 608
Fsp4HI	GCNGC	4 cut(s)	27, 237, 529, 571
GluI	GCNGC	4 cut(s)	27, 237, 529, 571
HapII	CCGG	4 cut(s)	187, 261, 267, 290
Hin1II	CATG	3 cut(s)	330, 425, 509
HinfI	GANTC	5 cut(s)	89, 108, 164, 190, 577
HpaII	CCGG	4 cut(s)	187, 261, 267, 290
HphI	GGTGA	2 cut(s)	87, 623
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	3 cut(s)	121, 187, 506
HpyAV	CCTTC	2 cut(s)	124, 269
HpyCH4III	ACNGT	3 cut(s)	282, 313, 442
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	26, 236, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 534
HpyF3I	CTNAG	2 cut(s)	17, 555
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	330, 425, 509
Kpn2I	TCCGGA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	148
LpnPI	CCDG	7 cut(s)	200, 209, 274, 280, 303, 467, 594
Lsp1109I	GCAGC	3 cut(s)	38, 248, 540
LweI	GCATC	1 cut(s)	541
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	4 cut(s)	42, 146, 175, 436
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	9 cut(s)	22, 52, 55, 108, 191, 360, 429, 502, 586
MroI	TCCGGA	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	3 cut(s)	246, 414, 513
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	4 cut(s)	187, 261, 267, 290
Mva1269I	GAATGC	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	355, 534
NcoI	CCATGG	1 cut(s)	326
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	3 cut(s)	330, 425, 509
NlaIV	GGNNCC	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	532
PagI	TCATGA	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PctI	GAATGC	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	4 cut(s)	108, 164, 190, 577
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	28, 238, 530, 572
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	278
PspXI	VCTCGAGB	1 cut(s)	532
PstI	CTGCAG	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	246, 414, 513
SatI	GCNGC	4 cut(s)	27, 237, 529, 571
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	532
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
SsiI	CCGC	2 cut(s)	152, 570
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	3 cut(s)	282, 313, 442
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	7 cut(s)	122, 167, 193, 486, 533, 540, 585
TauI	GCSGC	1 cut(s)	573
TfiI	GAWTC	4 cut(s)	108, 164, 190, 577
Tru1I	TTAA	3 cut(s)	246, 414, 513
Tru9I	TTAA	3 cut(s)	246, 414, 513
TscAI	CASTG	3 cut(s)	436, 445, 458
TseI	GCWGC	3 cut(s)	26, 236, 528
TspDTI	ATGAA	3 cut(s)	225, 464, 494
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	3 cut(s)	436, 445, 458
VpaK11BI	GGWCC	1 cut(s)	278
VspI	ATTAAT	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.