Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

44201757 .. 44204529

Gene Structure 2773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG235500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAAACCCTAACGACCTCCTCCTCTTCTTCTGCTACCTTCATGTCCTCCTCTTCCCCCTTTTCGATTTTCTCCCCAAGAAAAGCCCTCTCCTTCAGACCCTTTCACCTCCCGCTCGCTTCCAAAGGAAACGAAAATGGCTCCAATCCTCCTCAGTCGGATTCCAAAGAAACCAAGAACCTTCCGGTTCTCAGTAATCGCCACCTCTCCCTCTCCCCACTCTCCAAGGATGCGGCAATGGGATTGGTGATGGGTGCTGCCACAGGAAGAGGGTGGACTACAGGTTCTGGGATGGAGGGGCCTCCTGCACCTGCTGGGATTGAATCGCAATCTAGCACTGAGAATGTCTCCACTTTTCCTTGGTCTCTCTTTACAAAGTCTCCTCGCCGTAGAATGCTCGTGGCTTTCACTTGCAACATTTGTGGGCAGCGGACAACTCGGGCAATCAATCCCCATGCATTCACTGATGGCACTGTCTTTGTGCAGTGTTGTGGATGCAATGCCTTTCATAAGCTCGTGGATAATTTGAACCTGTTTCATGAGATGAAGTGCTATGTGAGCCCAGGCTTTGATTACAAAGGTAATGGATGGGATGCTGTTAACTTCAAATATCTGGAAATGGACGATGGTGACGATGAAATATTTCCCTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

218

Amino Acids

23.74

Weight (kDa)

6.94

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	134 - 184	1e-15	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	319
Acc36I	ACCTGC	1 cut(s)	319
AccBSI	CCGCTC	1 cut(s)	115
AciI	CCGC	3 cut(s)	113, 233, 430
AcuI	CTGAAG	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	323, 529, 607
AjnI	CCWGG	1 cut(s)	562
AloI	GAACNNNNNNTCC	2 cut(s)	268, 300
AluBI	AGCT	1 cut(s)	514
AluI	AGCT	1 cut(s)	514
Alw26I	GTCTC	3 cut(s)	352, 369, 384
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	438
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	257, 427
Asp700I	GAANNNNTTC	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	98, 259, 641
AvaI	CYCGRG	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	563
BauI	CACGAG	2 cut(s)	398, 515
BbvI	GCAGC	2 cut(s)	244, 439
BccI	CCATC	5 cut(s)	244, 286, 461, 582, 620
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	564
BcoDI	GTCTC	3 cut(s)	352, 369, 384
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	3 cut(s)	234, 258, 428
BlsI	GCNGC	3 cut(s)	235, 259, 429
Bme1390I	CCNGG	1 cut(s)	564
BmeT110I	CYCGRG	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	142, 300
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	3 cut(s)	220, 485, 583
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	225, 359, 562
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bse3DI	GCAATG	2 cut(s)	243, 505
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	225, 359, 562
BseGI	GGATG	5 cut(s)	235, 297, 500, 593, 598
BseMI	GCAATG	2 cut(s)	243, 505
BseMII	CTCAG	3 cut(s)	167, 205, 330
BseRI	GAGGAG	5 cut(s)	10, 13, 40, 141, 372
BseXI	GCAGC	2 cut(s)	244, 439
BseYI	CCCAGC	1 cut(s)	314
BsgI	GTGCAG	2 cut(s)	291, 503
BshFI	GGCC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	1 cut(s)	185
BsmAI	GTCTC	3 cut(s)	352, 369, 384
BsmI	GAATGC	2 cut(s)	399, 458
BsnI	GGCC	1 cut(s)	301
Bso31I	GGTCTC	1 cut(s)	369
BsoBI	CYCGRG	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	563
BspACI	CCGC	3 cut(s)	113, 233, 430
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	3 cut(s)	166, 204, 331
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	142, 300
BspMI	ACCTGC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	369
BsrBI	CCGCTC	1 cut(s)	115
BsrDI	GCAATG	2 cut(s)	243, 505
BssECI	CCNNGG	3 cut(s)	225, 359, 562
BssSI	CACGAG	2 cut(s)	398, 515
BssT1I	CCWWGG	2 cut(s)	225, 359
Bst2BI	CACGAG	2 cut(s)	398, 515
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	475
Bst6I	CTCTTC	3 cut(s)	31, 58, 262
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	153, 191, 339
BstF5I	GGATG	5 cut(s)	235, 297, 500, 593, 598
BstMAI	GTCTC	3 cut(s)	352, 369, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	558
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	244, 439
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	5 cut(s)	235, 297, 500, 593, 598
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	4 cut(s)	336, 462, 471, 491
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
CviAII	CATG	3 cut(s)	43, 455, 539
CviJI	RGCY	7 cut(s)	86, 141, 301, 404, 514, 561, 567
CviKI_1	RGCY	7 cut(s)	86, 141, 301, 404, 514, 561, 567
DdeI	CTNAG	3 cut(s)	153, 191, 339
Eam1104I	CTCTTC	3 cut(s)	31, 58, 262
EarI	CTCTTC	3 cut(s)	31, 58, 262
Eco130I	CCWWGG	2 cut(s)	225, 359
Eco24I	GRGCYC	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	225, 359
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	563
ErhI	CCWWGG	2 cut(s)	225, 359
FaeI	CATG	3 cut(s)	46, 458, 542
FaiI	YATR	5 cut(s)	44, 456, 510, 540, 555
FatI	CATG	3 cut(s)	42, 454, 538
FauI	CCCGC	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	234, 258, 428
FokI	GGATG	5 cut(s)	242, 304, 507, 600, 605
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	3 cut(s)	234, 258, 428
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	3 cut(s)	234, 258, 428
GsaI	CCCAGC	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	3 cut(s)	46, 458, 542
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HinfI	GANTC	2 cut(s)	161, 323
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	3 cut(s)	98, 259, 641
Hpy166II	GTNNAC	2 cut(s)	276, 601
Hpy188I	TCNGA	2 cut(s)	98, 160
Hpy188III	TCNNGA	2 cut(s)	539, 614
Hpy8I	GTNNAC	2 cut(s)	276, 601
HpyAV	CCTTC	3 cut(s)	49, 103, 191
HpyCH4III	ACNGT	1 cut(s)	475
HpyCH4V	TGCA	5 cut(s)	308, 414, 458, 484, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	558
HpyF3I	CTNAG	3 cut(s)	153, 191, 339
Hsp92II	CATG	3 cut(s)	46, 458, 542
KspAI	GTTAAC	1 cut(s)	601
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	2 cut(s)	244, 439
LweI	GCATC	3 cut(s)	220, 485, 583
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	629
MbiI	CCGCTC	1 cut(s)	115
MboII	GAAGA	4 cut(s)	18, 21, 45, 279
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	1 cut(s)	523
MmeI	TCCRAC	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	564
Mva1269I	GAATGC	2 cut(s)	399, 458
MvaI	CCWGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	1 cut(s)	558
NlaIII	CATG	3 cut(s)	46, 458, 542
NlaIV	GGNNCC	2 cut(s)	142, 300
NmuCI	GTSAC	1 cut(s)	629
NsiI	ATGCAT	1 cut(s)	460
PagI	TCATGA	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	2 cut(s)	399, 458
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	161, 323
PkrI	GCNGC	3 cut(s)	235, 259, 429
Psp6I	CCWGG	1 cut(s)	562
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	2 cut(s)	142, 300
PspPI	GGNCC	1 cut(s)	299
PstNI	CAGNNNCTG	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	3 cut(s)	234, 258, 428
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	1 cut(s)	563
SfaNI	GCATC	3 cut(s)	220, 485, 583
SfcI	CTRYAG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	523
SsiI	CCGC	3 cut(s)	113, 233, 430
SspI	AATATT	1 cut(s)	642
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	2 cut(s)	225, 359
TaaI	ACNGT	1 cut(s)	475
TaqI	TCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	523
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	161, 323
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	4 cut(s)	343, 469, 478, 491
TseFI	GTSAC	1 cut(s)	629
TseI	GCWGC	2 cut(s)	257, 427
Tsp45I	GTSAC	1 cut(s)	629
TspDTI	ATGAA	5 cut(s)	31, 497, 527, 560, 651
TspRI	CASTG	4 cut(s)	343, 469, 478, 491
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.