Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

24960132 .. 24962113

Gene Structure 1982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1126400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAAGCCCTGATCAGCTCGTATTCTCCTACAATCACGTCGTCCGCTTCTTCCTTCTCCGTTTTCTCTCCCCGAAAGTCCCTCCCTTCACGGCCCTTTCAGCTTCCGCTCGCCTCCAAAGAAATCAATCGCCTTCCGATTCTCAGCAATCGCCATCTCTCCCTCTCACCACTCTCCAAGGACGCAGCAATGGGACTGGTGATGGGTGCGGCGACAGGAAGAGGGTGGACTACAGGTTCTGGAATGGAAGGCCCTCCTGCCCCTGCTGGGGTTCAGACACAAAGCACAGAGAATGTCTCCACTTTTCCCTGGTCTCTATTCACCAAATCGCCTCGCCGGAGGATGCTTGTAGCTTTCACTTGTAACATTTGTGGGCAGAGGACAACGCGGGCAATTAACCCCCATGCTTACACTGACGGCACCGTCTTTGTGCAGTGTTGTGGATGCAATGCATTTCATAAGCTCGTGGATCATTTGAACCTGTTTCATGAGATGAAGTGCTATGTGAGTCCAGGTTTTAATTACAAAGGTAACGGATGGGAAGCTGTTAATTTCAAATATCTGGAGATGGATGATGATAAAGGTAATGATGACATATTTCCCATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

204

Amino Acids

22.29

Weight (kDa)

8.77

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	117 - 168	6.3e-17	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	109
AccII	CGCG	1 cut(s)	388
AciI	CCGC	4 cut(s)	45, 107, 209, 388
AclWI	GGATC	1 cut(s)	477
AfiI	CCNNNNNNNGG	2 cut(s)	267, 268
AgsI	TTSAA	2 cut(s)	478, 556
AjiI	CACGTC	1 cut(s)	39
AjnI	CCWGG	2 cut(s)	308, 511
AloI	GAACNNNNNNTCC	2 cut(s)	220, 252
AluBI	AGCT	5 cut(s)	18, 103, 353, 463, 545
AluI	AGCT	5 cut(s)	18, 103, 353, 463, 545
Alw26I	GTCTC	2 cut(s)	301, 318
AlwI	GGATC	1 cut(s)	477
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	92, 250
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	93, 251
AsuHPI	GGTGA	3 cut(s)	159, 211, 313
BanI	GGYRCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	464
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	5 cut(s)	162, 196, 531, 562, 611
BceAI	ACGGC	2 cut(s)	107, 433
BciT130I	CCWGG	2 cut(s)	310, 513
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	301, 318
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	186, 210
BlsI	GCNGC	2 cut(s)	187, 211
Bme1390I	CCNGG	2 cut(s)	310, 513
BmgBI	CACGTC	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	93, 251
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	2 cut(s)	310, 513
BmsI	GCATC	2 cut(s)	333, 434
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	177, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 268
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	2 cut(s)	195, 454
BseBI	CCWGG	2 cut(s)	310, 513
BseDI	CCNNGG	2 cut(s)	177, 308
BseGI	GGATG	5 cut(s)	348, 449, 542, 577, 603
BseLI	CCNNNNNNNGG	2 cut(s)	267, 268
BseMI	GCAATG	2 cut(s)	195, 454
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	2 cut(s)	94, 252
BshNI	GGYRCC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	2 cut(s)	64, 207
BslI	CCNNNNNNNGG	2 cut(s)	267, 268
BsmAI	GTCTC	2 cut(s)	301, 318
BsmFI	GGGAC	2 cut(s)	64, 207
BsnI	GGCC	2 cut(s)	94, 252
Bso31I	GGTCTC	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	12, 469
BspACI	CCGC	4 cut(s)	45, 107, 209, 388
BspANI	GGCC	2 cut(s)	94, 252
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	421
BspPI	GGATC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	318
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	195, 454
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	177, 308
BssMI	GATC	2 cut(s)	12, 469
BssSI	CACGAG	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	464
Bst2UI	CCWGG	2 cut(s)	310, 513
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	111, 390
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	5 cut(s)	348, 449, 542, 577, 603
BstFNI	CGCG	1 cut(s)	388
BstKTI	GATC	2 cut(s)	15, 472
BstMAI	GTCTC	2 cut(s)	301, 318
BstMBI	GATC	2 cut(s)	12, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNI	CCWGG	2 cut(s)	310, 513
BstSCI	CCNGG	2 cut(s)	308, 511
BstSFI	CTRYAG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	94, 252
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	5 cut(s)	348, 449, 542, 577, 603
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	2 cut(s)	411, 440
Cac8I	GCNNGC	2 cut(s)	111, 390
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	487
Cfr13I	GGNCC	2 cut(s)	93, 251
CseI	GACGC	1 cut(s)	191
CviAII	CATG	2 cut(s)	404, 488
CviJI	RGCY	8 cut(s)	8, 18, 94, 103, 252, 353, 463, 545
CviKI_1	RGCY	8 cut(s)	8, 18, 94, 103, 252, 353, 463, 545
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	2 cut(s)	14, 471
DpnII	GATC	2 cut(s)	12, 469
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	308, 511
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	407, 491
FaiI	YATR	5 cut(s)	405, 459, 489, 504, 596
FaqI	GGGAC	2 cut(s)	64, 207
FatI	CATG	2 cut(s)	403, 487
FauI	CCCGC	1 cut(s)	381
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	186, 210
FokI	GGATG	5 cut(s)	355, 456, 549, 584, 590
Fsp4HI	GCNGC	2 cut(s)	186, 210
GluI	GCNGC	2 cut(s)	186, 210
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	2 cut(s)	94, 252
HapII	CCGG	1 cut(s)	337
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	407, 491
HinfI	GANTC	2 cut(s)	139, 508
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	3 cut(s)	159, 211, 313
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	138, 276
Hpy188III	TCNNGA	3 cut(s)	240, 488, 563
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	64, 96, 143, 242
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	433, 447, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	407, 491
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 469
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	2 cut(s)	333, 434
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	362, 530
MalI	GATC	2 cut(s)	14, 471
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	2 cut(s)	12, 469
MboII	GAAGA	2 cut(s)	42, 231
MluCI	AATT	3 cut(s)	393, 520, 550
MlyI	GAGTC	1 cut(s)	517
MnlI	CCTC	8 cut(s)	92, 124, 173, 215, 264, 333, 342, 372
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	3 cut(s)	396, 519, 549
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	310, 513
MvaI	CCWGG	2 cut(s)	310, 513
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	2 cut(s)	12, 469
NlaIII	CATG	2 cut(s)	407, 491
NlaIV	GGNNCC	1 cut(s)	421
NsiI	ATGCAT	1 cut(s)	454
PagI	TCATGA	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	187, 211
PleI	GAGTC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	308, 511
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	2 cut(s)	308, 511
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	2 cut(s)	93, 251
PstNI	CAGNNNCTG	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	396, 519, 549
SatI	GCNGC	2 cut(s)	186, 210
Sau3AI	GATC	2 cut(s)	12, 469
Sau96I	GGNCC	2 cut(s)	93, 251
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	310, 513
SfaNI	GCATC	2 cut(s)	333, 434
SfcI	CTRYAG	1 cut(s)	231
Sse9I	AATT	3 cut(s)	393, 520, 550
SsiI	CCGC	4 cut(s)	45, 107, 209, 388
StyD4I	CCNGG	2 cut(s)	308, 511
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	1 cut(s)	41
TasI	AATT	3 cut(s)	393, 520, 550
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	396, 519, 549
Tru9I	TTAA	3 cut(s)	396, 519, 549
TscAI	CASTG	2 cut(s)	418, 440
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	446, 476, 509
TspGWI	ACGGA	2 cut(s)	49, 549
TspRI	CASTG	2 cut(s)	418, 440
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.