Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

40311447 .. 40313033

Gene Structure 1587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG237500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAGCCTTAACGACCTCCTCCTCTTCTGCTACCTTCATGTCCTCCTCTTCCCCCTTTTCGATTTTCTCCCCAAGAAGAAAAGCCCTCTCCTTCAGACCCTTTCACCTCCCGCTCGCTTCCAAAGGAAACGAAAATGGCTCCAATCCTCCTCCTCAGTCGGATTCCAAAGAAACCAAGAACCTTCCGGTTCTCAGTAATCGCCACCTTTCCCTTTCCCCACTCTCCAAGGATGCGGCAATGGGATTGGTGATGGGTGCTGCGACAGGAAGAGGGTGGACTACAGGTTCTGGGATGGAGGGGCCTCCTGCACCTGCTGGGATTGAATCGCAATCTAGCACTGAGAATGTCTCCACTTTTCCTTGGTCTCTCTTTACAAAGTCTCCTCGCCGTAGAATGCTCGTGGCTTTCACTTGCAACATTTGTGGGCAGCGGACAACTCGGGCAATCAATCCCCATGCATTCACTGATGGCACTGTCTTTGTGCAGTGTTGTGGATGCAATGCCTTTCATAAGCTCGTGGATAATTTGAACCTGTTTCATGAGATGAAGTGCTATGTGAGCCCAGGCTTTGATTACAAAGGTAATGGATGGGATGCTGTTAACTTCAAATATCTGGAAATGGACGATGGTGATGATGAAATATTTCCCTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

219

Amino Acids

23.88

Weight (kDa)

7.64

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	135 - 185	1e-15	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
Acc36I	ACCTGC	1 cut(s)	322
AccBSI	CCGCTC	1 cut(s)	115
AciI	CCGC	3 cut(s)	113, 236, 433
AcuI	CTGAAG	1 cut(s)	79
AgsI	TTSAA	3 cut(s)	326, 532, 610
AjnI	CCWGG	1 cut(s)	565
AloI	GAACNNNNNNTCC	2 cut(s)	271, 303
AluBI	AGCT	1 cut(s)	517
AluI	AGCT	1 cut(s)	517
Alw26I	GTCTC	3 cut(s)	355, 372, 387
AlwNI	CAGNNNCTG	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	260, 430
Asp700I	GAANNNNTTC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	98, 262, 644
AvaI	CYCGRG	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	566
BauI	CACGAG	2 cut(s)	401, 518
BbvI	GCAGC	2 cut(s)	247, 442
BccI	CCATC	5 cut(s)	247, 289, 464, 585, 623
BceAI	ACGGC	1 cut(s)	375
BciT130I	CCWGG	1 cut(s)	567
BcoDI	GTCTC	3 cut(s)	355, 372, 387
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	237, 261, 431
BlsI	GCNGC	3 cut(s)	238, 262, 432
Bme1390I	CCNGG	1 cut(s)	567
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	142, 303
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	3 cut(s)	223, 488, 586
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
BsaI	GGTCTC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	228, 362, 565
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bse3DI	GCAATG	2 cut(s)	246, 508
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	3 cut(s)	228, 362, 565
BseGI	GGATG	5 cut(s)	238, 300, 503, 596, 601
BseMI	GCAATG	2 cut(s)	246, 508
BseMII	CTCAG	3 cut(s)	170, 208, 333
BseRI	GAGGAG	6 cut(s)	10, 13, 37, 141, 144, 375
BseXI	GCAGC	2 cut(s)	247, 442
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	2 cut(s)	294, 506
BshFI	GGCC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	441
BsiSI	CCGG	1 cut(s)	188
BsmAI	GTCTC	3 cut(s)	355, 372, 387
BsmI	GAATGC	2 cut(s)	402, 461
BsnI	GGCC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	372
BsoBI	CYCGRG	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	566
BspACI	CCGC	3 cut(s)	113, 236, 433
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	3 cut(s)	169, 207, 334
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	142, 303
BspMI	ACCTGC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	372
BsrBI	CCGCTC	1 cut(s)	115
BsrDI	GCAATG	2 cut(s)	246, 508
BssECI	CCNNGG	3 cut(s)	228, 362, 565
BssSI	CACGAG	2 cut(s)	401, 518
BssT1I	CCWWGG	2 cut(s)	228, 362
Bst2BI	CACGAG	2 cut(s)	401, 518
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	3 cut(s)	31, 55, 265
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	3 cut(s)	156, 194, 342
BstF5I	GGATG	5 cut(s)	238, 300, 503, 596, 601
BstMAI	GTCTC	3 cut(s)	355, 372, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	561
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	247, 442
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	5 cut(s)	238, 300, 503, 596, 601
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	4 cut(s)	339, 465, 474, 494
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	302
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	3 cut(s)	40, 458, 542
CviJI	RGCY	8 cut(s)	8, 86, 141, 304, 407, 517, 564, 570
CviKI_1	RGCY	8 cut(s)	8, 86, 141, 304, 407, 517, 564, 570
DdeI	CTNAG	3 cut(s)	156, 194, 342
Eam1104I	CTCTTC	3 cut(s)	31, 55, 265
EarI	CTCTTC	3 cut(s)	31, 55, 265
Eco130I	CCWWGG	2 cut(s)	228, 362
Eco24I	GRGCYC	1 cut(s)	566
Eco31I	GGTCTC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	79
Eco88I	CYCGRG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	228, 362
EcoT22I	ATGCAT	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	566
ErhI	CCWWGG	2 cut(s)	228, 362
FaeI	CATG	3 cut(s)	43, 461, 545
FaiI	YATR	5 cut(s)	41, 459, 513, 543, 558
FatI	CATG	3 cut(s)	39, 457, 541
FauI	CCCGC	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	237, 261, 431
FokI	GGATG	5 cut(s)	245, 307, 510, 603, 608
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	3 cut(s)	237, 261, 431
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	3 cut(s)	237, 261, 431
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	3 cut(s)	43, 461, 545
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	164, 326
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	3 cut(s)	98, 262, 644
Hpy166II	GTNNAC	2 cut(s)	279, 604
Hpy188I	TCNGA	2 cut(s)	98, 163
Hpy188III	TCNNGA	2 cut(s)	542, 617
Hpy8I	GTNNAC	2 cut(s)	279, 604
HpyAV	CCTTC	3 cut(s)	46, 103, 194
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	5 cut(s)	311, 417, 461, 487, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	561
HpyF3I	CTNAG	3 cut(s)	156, 194, 342
Hsp92II	CATG	3 cut(s)	43, 461, 545
KspAI	GTTAAC	1 cut(s)	604
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	2 cut(s)	247, 442
LweI	GCATC	3 cut(s)	223, 488, 586
MaeI	CTAG	1 cut(s)	336
MbiI	CCGCTC	1 cut(s)	115
MboII	GAAGA	4 cut(s)	18, 42, 90, 282
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	645
MseI	TTAA	2 cut(s)	11, 603
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	2 cut(s)	402, 461
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	561
NlaIII	CATG	3 cut(s)	43, 461, 545
NlaIV	GGNNCC	2 cut(s)	142, 303
NsiI	ATGCAT	1 cut(s)	463
PagI	TCATGA	1 cut(s)	541
PaqCI	CACCTGC	1 cut(s)	322
PctI	GAATGC	2 cut(s)	402, 461
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	2 cut(s)	164, 326
PkrI	GCNGC	3 cut(s)	238, 262, 432
Psp6I	CCWGG	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	142, 303
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	11, 603
SatI	GCNGC	3 cut(s)	237, 261, 431
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	566
SfaNI	GCATC	3 cut(s)	223, 488, 586
SfcI	CTRYAG	1 cut(s)	282
Sse9I	AATT	1 cut(s)	526
SsiI	CCGC	3 cut(s)	113, 236, 433
SspI	AATATT	1 cut(s)	645
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	2 cut(s)	228, 362
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	62
TasI	AATT	1 cut(s)	526
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	164, 326
Tru1I	TTAA	2 cut(s)	11, 603
Tru9I	TTAA	2 cut(s)	11, 603
TscAI	CASTG	4 cut(s)	346, 472, 481, 494
TseI	GCWGC	2 cut(s)	260, 430
TspDTI	ATGAA	5 cut(s)	28, 500, 530, 563, 654
TspRI	CASTG	4 cut(s)	346, 472, 481, 494
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.