Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

40464229 .. 40465707

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAAACCCTAACGACCTCCTCCTCTTCTGCTACCTTCATGTCCTCCTCTTTTCGATTTTCTCCCCAAGAAAAGCCCTCTCCTTCAGACCCTTTCACCTCCCGCTCGCTTCCAAAGGTAAAATCACTCCTCCTTCCTTCTCTTCATTTCCATCTTTCGTTCCCAGTAAAGCATCAAAGAAACGAAAATGGCTCCAATCCTCCTCCTCCTCAGTCGGATTCCAAAGAAACCAAGAACCTTCCGGTTCTCAGTAATCGCTACCTCTCCCTCTCCCCACTCTCCAAGGACGCGGCAATGGGATTGGTGATGGGTGCTGCCACAGGAAGAGGGTGGACTACAGGTTCTGGGATGGAGGGGCCTCCTGCACCTGCTGGGATTGAATCGCAATCTAGCACTGACAATCGGACAACTCGGGCAATCAATCCCCATGCATTCACTGATGGCACTGTCTTTGTGCAGTGTTGTGGATGCAATGCCTTTCATAAGCTTGTGGATAATTTGAACCTGTTTCATGAGATGAAGTGCTATGTGAGCCCAGGCTTTGATTACAAAGGTAATGGATGGGATGCTGTTAACTTCAAATATCTGGAAATGGACGATGGTGATGATGAAATATTTCCCTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

209

Amino Acids

22.85

Weight (kDa)

6.05

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	133 - 175	2.2e-10	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	105
AccII	CGCG	1 cut(s)	290
AciI	CCGC	2 cut(s)	103, 290
AcuI	CTGAAG	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	380, 502, 580
AjnI	CCWGG	1 cut(s)	535
AloI	GAACNNNNNNTCC	2 cut(s)	325, 357
AluBI	AGCT	1 cut(s)	487
AluI	AGCT	1 cut(s)	487
AlwNI	CAGNNNCTG	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	615
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	3 cut(s)	88, 316, 614
AvaI	CYCGRG	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	6 cut(s)	159, 301, 343, 434, 555, 593
BciT130I	CCWGG	1 cut(s)	537
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	2 cut(s)	291, 315
BlsI	GCNGC	2 cut(s)	292, 316
Bme1390I	CCNGG	1 cut(s)	537
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	2 cut(s)	193, 357
BmrFI	CCNGG	1 cut(s)	537
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	3 cut(s)	181, 458, 556
BmuI	ACTGGG	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	282, 535
BsaWI	WCCGGW	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	2 cut(s)	300, 478
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	282, 535
BseGI	GGATG	4 cut(s)	354, 473, 566, 571
BseMI	GCAATG	2 cut(s)	300, 478
BseMII	CTCAG	2 cut(s)	224, 262
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	7 cut(s)	10, 13, 37, 119, 192, 195, 198
BseXI	GCAGC	1 cut(s)	301
BseYI	CCCAGC	1 cut(s)	371
BsgI	GTGCAG	2 cut(s)	348, 476
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	358
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	358
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	536
BspACI	CCGC	2 cut(s)	103, 290
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	2 cut(s)	223, 261
BspFNI	CGCG	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	193, 357
BspMI	ACCTGC	1 cut(s)	376
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	2 cut(s)	300, 478
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	282, 535
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	3 cut(s)	31, 147, 319
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	210, 248
BstF5I	GGATG	4 cut(s)	354, 473, 566, 571
BstFNI	CGCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	531
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	358
BtsCI	GGATG	4 cut(s)	354, 473, 566, 571
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	4 cut(s)	393, 435, 444, 464
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	356
CseI	GACGC	1 cut(s)	296
CviAII	CATG	3 cut(s)	40, 428, 512
CviJI	RGCY	6 cut(s)	76, 192, 358, 487, 534, 540
CviKI_1	RGCY	6 cut(s)	76, 192, 358, 487, 534, 540
DdeI	CTNAG	2 cut(s)	210, 248
Eam1104I	CTCTTC	3 cut(s)	31, 147, 319
EarI	CTCTTC	3 cut(s)	31, 147, 319
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	536
Eco57I	CTGAAG	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	3 cut(s)	43, 431, 515
FaiI	YATR	5 cut(s)	41, 429, 483, 513, 528
FatI	CATG	3 cut(s)	39, 427, 511
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	291, 315
FokI	GGATG	4 cut(s)	361, 480, 573, 578
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	2 cut(s)	291, 315
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	2 cut(s)	291, 315
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	242
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	43, 431, 515
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	2 cut(s)	218, 380
HpaI	GTTAAC	1 cut(s)	574
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	3 cut(s)	88, 316, 614
Hpy166II	GTNNAC	2 cut(s)	333, 574
Hpy188I	TCNGA	3 cut(s)	88, 217, 405
Hpy188III	TCNNGA	2 cut(s)	512, 587
Hpy8I	GTNNAC	2 cut(s)	333, 574
HpyAV	CCTTC	5 cut(s)	46, 93, 143, 147, 248
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	4 cut(s)	365, 431, 457, 471
HpyF10VI	GCNNNNNNNGC	1 cut(s)	531
HpyF3I	CTNAG	2 cut(s)	210, 248
Hsp92II	CATG	3 cut(s)	43, 431, 515
KspAI	GTTAAC	1 cut(s)	574
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	3 cut(s)	181, 458, 556
MaeI	CTAG	1 cut(s)	390
MbiI	CCGCTC	1 cut(s)	105
MboII	GAAGA	3 cut(s)	18, 134, 336
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	1 cut(s)	496
MmeI	TCCRAC	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	1 cut(s)	573
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	531
NlaIII	CATG	3 cut(s)	43, 431, 515
NlaIV	GGNNCC	2 cut(s)	193, 357
NsiI	ATGCAT	1 cut(s)	433
PagI	TCATGA	1 cut(s)	511
PaqCI	CACCTGC	1 cut(s)	376
PctI	GAATGC	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	218, 380
PkrI	GCNGC	2 cut(s)	292, 316
Psp6I	CCWGG	1 cut(s)	535
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	2 cut(s)	193, 357
PspPI	GGNCC	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	2 cut(s)	291, 315
Sau96I	GGNCC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	536
SfaNI	GCATC	3 cut(s)	181, 458, 556
SfcI	CTRYAG	1 cut(s)	336
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	2 cut(s)	103, 290
SspI	AATATT	1 cut(s)	615
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	496
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	218, 380
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	4 cut(s)	400, 442, 451, 464
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	6 cut(s)	28, 134, 470, 500, 533, 624
TspRI	CASTG	4 cut(s)	400, 442, 451, 464
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.