Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

17454106 .. 17455987

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G169800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAAGCCCTAATCAGCTCATCTTCTGCTACAATCACATCATCCTCTTCTCCCTTTTCCATTTTCTCTCCCAGAAAGACTCTCCCTTTGCGACCTGTTCAGCTCCCCCTCGCCTCCAAAGGAAACGAGAACGAATCCAGTCCAAGTTCGGATTCCAAAGACATCAAAAATGTTCCAGTTCTTAGCAATCGCCATCTCTCCCTCTCACCACTCTCCAAGGATGCGGCAATGGGACTGGTGATGAGTGCGGCGACAGGACGAGGGTGGACTACAGGTTCTGGAATGGAAGGGCCTCCTGCTCCTGCTGGGATTCACACCCACTCAAGCACAGAGAATGTCTCCACTTTTCCCTGGTCTCTCTTCACTAAATCGCCTCGCCGTAGGATGCTTGTAGCTTTCACTTGTAACATTTGTGGGCAGCGGACAACGCGGGCAATTAACCCCCATGCATACACCGATGGAACTGTCTTTGTGCAGTGTTGTGGATGCAACGCATTTCATAAGCTCGTGGATAATTTGAACCTGTTTCATGAGATGAAGTGCTATGTGAGCCCAGGTTTTAATTACAAAGGTAATGGATGGGATGCTGTTAACTTCAAATATCTGGAAATGGATGATGATGATGAGGATGGCATGTTTCCCATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

217

Amino Acids

23.49

Weight (kDa)

6.99

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	430
AciI	CCGC	4 cut(s)	224, 248, 421, 430
AgsI	TTSAA	2 cut(s)	520, 598
AjnI	CCWGG	2 cut(s)	350, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	136, 168
AloI	GAACNNNNNNTCC	2 cut(s)	259, 291
AluBI	AGCT	4 cut(s)	18, 103, 395, 505
AluI	AGCT	4 cut(s)	18, 103, 395, 505
Alw26I	GTCTC	2 cut(s)	343, 360
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	418
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	198, 250
BanII	GRGCYC	1 cut(s)	554
BauI	CACGAG	1 cut(s)	506
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	4 cut(s)	201, 452, 573, 623
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	2 cut(s)	352, 555
BcoDI	GTCTC	2 cut(s)	343, 360
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	3 cut(s)	225, 249, 419
BlsI	GCNGC	3 cut(s)	226, 250, 420
Bme1390I	CCNGG	2 cut(s)	352, 555
BmgT120I	GGNCC	1 cut(s)	290
BmrFI	CCNGG	2 cut(s)	352, 555
BmsI	GCATC	4 cut(s)	211, 375, 476, 574
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuEI	CTTGAG	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	216, 350, 553
Bse1I	ACTGG	3 cut(s)	138, 176, 240
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	352, 555
BseDI	CCNNGG	3 cut(s)	216, 350, 553
BseGI	GGATG	8 cut(s)	41, 226, 390, 491, 584, 589, 619, 634
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	3 cut(s)	138, 176, 240
BseXI	GCAGC	1 cut(s)	430
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	246
BsmAI	GTCTC	2 cut(s)	343, 360
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	554
BspACI	CCGC	4 cut(s)	224, 248, 421, 430
BspANI	GGCC	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	3 cut(s)	138, 176, 240
BssECI	CCNNGG	3 cut(s)	216, 350, 553
BssSI	CACGAG	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	506
Bst2UI	CCWGG	2 cut(s)	352, 555
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	52, 365
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	8 cut(s)	41, 226, 390, 491, 584, 589, 619, 634
BstFNI	CGCG	1 cut(s)	430
BstMAI	GTCTC	2 cut(s)	343, 360
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 549
BstNI	CCWGG	2 cut(s)	352, 555
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	2 cut(s)	350, 553
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	8 cut(s)	41, 226, 390, 491, 584, 589, 619, 634
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	278
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	290
CviAII	CATG	3 cut(s)	446, 530, 634
CviJI	RGCY	7 cut(s)	8, 18, 103, 292, 395, 505, 552
CviKI_1	RGCY	7 cut(s)	8, 18, 103, 292, 395, 505, 552
DdeI	CTNAG	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	52, 365
EarI	CTCTTC	2 cut(s)	52, 365
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	554
Eco31I	GGTCTC	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	350, 553
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	3 cut(s)	449, 533, 637
FaiI	YATR	6 cut(s)	447, 451, 501, 531, 546, 635
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	3 cut(s)	445, 529, 633
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	225, 249, 419
FokI	GGATG	8 cut(s)	28, 233, 397, 498, 591, 596, 626, 641
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	3 cut(s)	225, 249, 419
GluI	GCNGC	3 cut(s)	225, 249, 419
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	292
Hin1II	CATG	3 cut(s)	449, 533, 637
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	4 cut(s)	79, 134, 152, 310
HpaI	GTTAAC	1 cut(s)	592
HphI	GGTGA	2 cut(s)	198, 250
Hpy166II	GTNNAC	2 cut(s)	267, 592
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	3 cut(s)	279, 530, 605
Hpy8I	GTNNAC	2 cut(s)	267, 592
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	449, 475, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 549
HpyF3I	CTNAG	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	449, 533, 637
KspAI	GTTAAC	1 cut(s)	592
LmnI	GCTCC	2 cut(s)	108, 304
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	4 cut(s)	211, 375, 476, 574
MaeIII	GTNAC	1 cut(s)	404
MboII	GAAGA	3 cut(s)	15, 39, 352
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	3 cut(s)	435, 514, 562
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	8 cut(s)	55, 119, 124, 212, 254, 303, 384, 619
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	3 cut(s)	438, 561, 591
MspA1I	CMGCKG	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	352, 555
MvaI	CCWGG	2 cut(s)	352, 555
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	2 cut(s)	427, 549
NlaIII	CATG	3 cut(s)	449, 533, 637
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	637
PagI	TCATGA	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	134, 152, 310
PkrI	GCNGC	3 cut(s)	226, 250, 420
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	350, 553
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	350, 553
PspPI	GGNCC	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	438, 561, 591
SatI	GCNGC	3 cut(s)	225, 249, 419
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	352, 555
SduI	GDGCHC	1 cut(s)	554
SetI	ASST	9 cut(s)	20, 97, 105, 277, 397, 507, 525, 559, 574
SfaNI	GCATC	4 cut(s)	211, 375, 476, 574
SfcI	CTRYAG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	3 cut(s)	435, 514, 562
SsiI	CCGC	4 cut(s)	224, 248, 421, 430
StyD4I	CCNGG	2 cut(s)	350, 553
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	466
TasI	AATT	3 cut(s)	435, 514, 562
TauI	GCSGC	2 cut(s)	227, 251
TfiI	GAWTC	3 cut(s)	134, 152, 310
Tru1I	TTAA	3 cut(s)	438, 561, 591
Tru9I	TTAA	3 cut(s)	438, 561, 591
TscAI	CASTG	1 cut(s)	482
TseI	GCWGC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	488, 518, 551
TspRI	CASTG	1 cut(s)	482
XceI	RCATGY	1 cut(s)	637
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.