Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Forward (+)

26980863 .. 26982457

Gene Structure 1595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAAACCCTAACGACCTCCTCCTCTTCTGCTACCTTCATGTCCTCCTCTTCCCCCTTTTCCATTTTCTCCCCAAGAAAAGCCCTCTCCTTCAGACCCTCTCACCTCCCACTCGCTTCCAAAGGAAACGAAAATGGCTCCAATCCTCCTCAGTCGGATTCCAAAGAAACCAAGAACCTTCCGGTTCTCAGTAATCGCCACCTTTCCCTTTCCCCACTCTCCAAGGATGCGGCAATGGGATTGGTGATGGGTGCTGCGACAGGAAGAGGGTGGACTACAGGTTCTGGGATGGAGGGGCCTCCTGCACCTGCTGGAATTGAATCGCAATCAAGCACTGAGAATGTCTCCACTTTTCCTTGGTCTCTTTTTACAAAGTCTCCTCGCCGTAGAATGCTCGTGGCTTTCACTTGCAACATTTGTGGGCAGCGGACAACTCGGGCAATCAATCCCCATGCATTCACTGATGGCACTGTCTTTGTGCAGTGTTGTGGATGCAACGCCTTTCATAAGCTCGTGGATAATTTGAACTTGTTTCATGAGATGAAGTGCTATGTGAGCCCAGGCTTTGATTACAAAGGTAATGGATGGGATGCTGTTAACTTCAAATATCTGGAAATGGACGATGGTGATGATGAAATATTTCCCTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

218

Amino Acids

23.6

Weight (kDa)

6.94

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	133 - 183	9.9e-16	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	316
AciI	CCGC	2 cut(s)	230, 427
AcuI	CTGAAG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	320, 526, 604
AjnI	CCWGG	1 cut(s)	559
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	1 cut(s)	511
AluI	AGCT	1 cut(s)	511
Alw26I	GTCTC	3 cut(s)	349, 366, 381
AlwNI	CAGNNNCTG	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	254, 424
Asp700I	GAANNNNTTC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	3 cut(s)	95, 256, 638
AvaI	CYCGRG	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	560
BauI	CACGAG	2 cut(s)	395, 512
BbvI	GCAGC	2 cut(s)	241, 436
BccI	CCATC	5 cut(s)	241, 283, 458, 579, 617
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	561
BcoDI	GTCTC	3 cut(s)	349, 366, 381
BfmI	CTRYAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	3 cut(s)	231, 255, 425
BlsI	GCNGC	3 cut(s)	232, 256, 426
Bme1390I	CCNGG	1 cut(s)	561
BmeT110I	CYCGRG	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	139, 297
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	3 cut(s)	217, 482, 580
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	3 cut(s)	222, 356, 559
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	3 cut(s)	222, 356, 559
BseGI	GGATG	5 cut(s)	232, 294, 497, 590, 595
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	3 cut(s)	164, 202, 327
BseRI	GAGGAG	5 cut(s)	10, 13, 37, 138, 369
BseXI	GCAGC	2 cut(s)	241, 436
BsgI	GTGCAG	2 cut(s)	288, 500
BshFI	GGCC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	182
BsmAI	GTCTC	3 cut(s)	349, 366, 381
BsmI	GAATGC	2 cut(s)	396, 455
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	366
BsoBI	CYCGRG	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	560
BspACI	CCGC	2 cut(s)	230, 427
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	3 cut(s)	163, 201, 328
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	139, 297
BspMI	ACCTGC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	3 cut(s)	222, 356, 559
BssSI	CACGAG	2 cut(s)	395, 512
BssT1I	CCWWGG	2 cut(s)	222, 356
Bst2BI	CACGAG	2 cut(s)	395, 512
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	3 cut(s)	31, 55, 259
BstDEI	CTNAG	3 cut(s)	150, 188, 336
BstF5I	GGATG	5 cut(s)	232, 294, 497, 590, 595
BstMAI	GTCTC	3 cut(s)	349, 366, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	241, 436
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	5 cut(s)	232, 294, 497, 590, 595
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	4 cut(s)	333, 459, 468, 488
BveI	ACCTGC	1 cut(s)	316
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	296
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	3 cut(s)	40, 452, 536
CviJI	RGCY	7 cut(s)	83, 138, 298, 401, 511, 558, 564
CviKI_1	RGCY	7 cut(s)	83, 138, 298, 401, 511, 558, 564
DdeI	CTNAG	3 cut(s)	150, 188, 336
Eam1104I	CTCTTC	3 cut(s)	31, 55, 259
EarI	CTCTTC	3 cut(s)	31, 55, 259
Eco130I	CCWWGG	2 cut(s)	222, 356
Eco24I	GRGCYC	1 cut(s)	560
Eco31I	GGTCTC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	2 cut(s)	222, 356
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	2 cut(s)	222, 356
FaeI	CATG	3 cut(s)	43, 455, 539
FaiI	YATR	5 cut(s)	41, 453, 507, 537, 552
FatI	CATG	3 cut(s)	39, 451, 535
Fnu4HI	GCNGC	3 cut(s)	231, 255, 425
FokI	GGATG	5 cut(s)	239, 301, 504, 597, 602
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	3 cut(s)	231, 255, 425
GluI	GCNGC	3 cut(s)	231, 255, 425
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	3 cut(s)	43, 455, 539
HincII	GTYRAC	1 cut(s)	598
HindII	GTYRAC	1 cut(s)	598
HinfI	GANTC	2 cut(s)	158, 320
HpaI	GTTAAC	1 cut(s)	598
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	3 cut(s)	95, 256, 638
Hpy166II	GTNNAC	2 cut(s)	273, 598
Hpy188I	TCNGA	2 cut(s)	95, 157
Hpy188III	TCNNGA	2 cut(s)	536, 611
Hpy8I	GTNNAC	2 cut(s)	273, 598
HpyAV	CCTTC	3 cut(s)	46, 100, 188
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	5 cut(s)	305, 411, 455, 481, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpyF3I	CTNAG	3 cut(s)	150, 188, 336
Hsp92II	CATG	3 cut(s)	43, 455, 539
KspAI	GTTAAC	1 cut(s)	598
LmnI	GCTCC	1 cut(s)	143
Lsp1109I	GCAGC	2 cut(s)	241, 436
LweI	GCATC	3 cut(s)	217, 482, 580
MboII	GAAGA	3 cut(s)	18, 42, 276
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	2 cut(s)	315, 520
MmeI	TCCRAC	1 cut(s)	135
Mph1103I	ATGCAT	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	561
Mva1269I	GAATGC	2 cut(s)	396, 455
MvaI	CCWGG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	555
NlaIII	CATG	3 cut(s)	43, 455, 539
NlaIV	GGNNCC	2 cut(s)	139, 297
NsiI	ATGCAT	1 cut(s)	457
PagI	TCATGA	1 cut(s)	535
PaqCI	CACCTGC	1 cut(s)	316
PctI	GAATGC	2 cut(s)	396, 455
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	158, 320
PkrI	GCNGC	3 cut(s)	232, 256, 426
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	2 cut(s)	139, 297
PspPI	GGNCC	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	3 cut(s)	231, 255, 425
Sau96I	GGNCC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	9 cut(s)	20, 38, 108, 180, 204, 283, 310, 513, 580
SfaNI	GCATC	3 cut(s)	217, 482, 580
SfcI	CTRYAG	1 cut(s)	276
Sse9I	AATT	2 cut(s)	315, 520
SsiI	CCGC	2 cut(s)	230, 427
SspI	AATATT	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	2 cut(s)	222, 356
TaaI	ACNGT	1 cut(s)	472
TasI	AATT	2 cut(s)	315, 520
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	158, 320
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	4 cut(s)	340, 466, 475, 488
TseI	GCWGC	2 cut(s)	254, 424
TspDTI	ATGAA	5 cut(s)	28, 494, 524, 557, 648
TspRI	CASTG	4 cut(s)	340, 466, 475, 488
XmnI	GAANNNNTTC	1 cut(s)	639
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.