Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

20976099 .. 20978012

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1129200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAAGCCTTAATCAGCTCGGCTTCTCCTACAATCACGTCGTCCGCTTCTTCCTTCTCCGTTTTCTCCCCCCGAAAGTCCCTCCCTTCACGACCCTTTCAGCTCCCACTCGCCTCCAAAGGAAACGAGAACGAGTCCAATCCGAAATCGGATTCCAAAGAAATCAATCGCCTTCCGATTCTCAGCAATCGCCATCTCTCCCTCTCACCACTCTCCAAGGATGCGGCAATGGGACTGGTGATGGGTGCGGCAACAGGAAGAGGGTGGACTACAGGTTCTGGAATGGAAGGCCCTCCTGCCCCTGCTGGGGTTCAGACAGAGTCGAGCACGGAGAATGTCTCCACTTTTCCCTGGTCTCTCTTCACAAAATCGCCTCGCCGGAGGATGCTTGTGGCTTTTACTTGTAACATTTGTGGGCAGAGGACAACGCGGGCAATTAACCCCCATGCTTACACTGACGGCACCGTCTTTGTGCAGTGTTGCGGATGCAATGCATTTCATAAGCTTGTGGATAATTTGAACCTGTTTCATGAGATGAAGTGCTATGTGAGTCCAGGTTTTAATTACAAAGGTAACGGATGGGAATCTGTTAACTTCAAGTATCTGGAGATGGATGATGATGATGCTAATGATGACATATTTCCCATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

218

Amino Acids

23.67

Weight (kDa)

6.89

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	131 - 182	7.5e-17	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	461
AccII	CGCG	1 cut(s)	430
AciI	CCGC	5 cut(s)	45, 224, 248, 430, 483
AfiI	CCNNNNNNNGG	2 cut(s)	306, 307
AgsI	TTSAA	2 cut(s)	520, 598
AjiI	CACGTC	1 cut(s)	39
AjnI	CCWGG	2 cut(s)	350, 553
AloI	GAACNNNNNNTCC	2 cut(s)	259, 291
AluBI	AGCT	3 cut(s)	18, 103, 505
AluI	AGCT	3 cut(s)	18, 103, 505
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	343, 360
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	198, 250
BanI	GGYRCC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	329
BccI	CCATC	5 cut(s)	201, 235, 573, 604, 653
BceAI	ACGGC	1 cut(s)	475
BciT130I	CCWGG	2 cut(s)	352, 555
BcoDI	GTCTC	2 cut(s)	343, 360
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	225, 249
BlsI	GCNGC	2 cut(s)	226, 250
Bme1390I	CCNGG	2 cut(s)	352, 555
BmgBI	CACGTC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	2 cut(s)	352, 555
BmsI	GCATC	4 cut(s)	211, 375, 476, 613
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpmI	CTGGAG	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	583
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	216, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 307
Bse1I	ACTGG	1 cut(s)	240
Bse3DI	GCAATG	2 cut(s)	234, 496
Bse8I	GATNNNNATC	1 cut(s)	583
BseBI	CCWGG	2 cut(s)	352, 555
BseDI	CCNNGG	2 cut(s)	216, 350
BseGI	GGATG	6 cut(s)	226, 390, 491, 584, 619, 645
BseJI	GATNNNNATC	1 cut(s)	583
BseLI	CCNNNNNNNGG	2 cut(s)	306, 307
BseMI	GCAATG	2 cut(s)	234, 496
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	240
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	1 cut(s)	291
BshNI	GGYRCC	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	379
BslFI	GGGAC	2 cut(s)	64, 246
BslI	CCNNNNNNNGG	2 cut(s)	306, 307
BsmAI	GTCTC	2 cut(s)	343, 360
BsmFI	GGGAC	2 cut(s)	64, 246
BsnI	GGCC	1 cut(s)	291
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	329
BspACI	CCGC	5 cut(s)	45, 224, 248, 430, 483
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	234, 496
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	216, 350
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	352, 555
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	253, 365
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	6 cut(s)	226, 390, 491, 584, 619, 645
BstFNI	CGCG	1 cut(s)	430
BstMAI	GTCTC	2 cut(s)	343, 360
BstNI	CCWGG	2 cut(s)	352, 555
BstSCI	CCNGG	2 cut(s)	350, 553
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	6 cut(s)	226, 390, 491, 584, 619, 645
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	453, 482
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	278
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	290
CviAII	CATG	2 cut(s)	446, 530
CviJI	RGCY	7 cut(s)	8, 18, 23, 103, 291, 395, 505
CviKI_1	RGCY	7 cut(s)	8, 18, 23, 103, 291, 395, 505
DdeI	CTNAG	1 cut(s)	182
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eam1104I	CTCTTC	2 cut(s)	253, 365
EarI	CTCTTC	2 cut(s)	253, 365
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	350, 553
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	449, 533
FaiI	YATR	5 cut(s)	447, 501, 531, 546, 638
FaqI	GGGAC	2 cut(s)	64, 246
FatI	CATG	2 cut(s)	445, 529
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	225, 249
FokI	GGATG	6 cut(s)	233, 397, 498, 591, 626, 632
Fsp4HI	GCNGC	2 cut(s)	225, 249
GluI	GCNGC	2 cut(s)	225, 249
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	379
Hin1II	CATG	2 cut(s)	449, 533
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	6 cut(s)	134, 152, 178, 320, 550, 584
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	1 cut(s)	379
HphI	GGTGA	2 cut(s)	198, 250
Hpy166II	GTNNAC	2 cut(s)	267, 592
Hpy188I	TCNGA	4 cut(s)	144, 151, 177, 315
Hpy188III	TCNNGA	4 cut(s)	90, 279, 530, 605
Hpy8I	GTNNAC	2 cut(s)	267, 592
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	4 cut(s)	64, 96, 182, 281
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	475, 489, 494
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	449, 533
KspAI	GTTAAC	1 cut(s)	592
LmnI	GCTCC	1 cut(s)	108
LweI	GCATC	4 cut(s)	211, 375, 476, 613
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	404, 572
MboII	GAAGA	3 cut(s)	42, 270, 352
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	3 cut(s)	435, 514, 562
MlyI	GAGTC	3 cut(s)	143, 329, 559
MnlI	CCTC	8 cut(s)	92, 124, 212, 254, 303, 375, 384, 414
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	4 cut(s)	11, 438, 561, 591
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	352, 555
MvaI	CCWGG	2 cut(s)	352, 555
MvnI	CGCG	1 cut(s)	430
NlaIII	CATG	2 cut(s)	449, 533
NlaIV	GGNNCC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	496
PagI	TCATGA	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	152, 178, 584
PflFI	GACNNNGTC	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	226, 250
PleI	GAGTC	3 cut(s)	142, 328, 558
PpsI	GAGTC	3 cut(s)	142, 328, 558
Psp6I	CCWGG	2 cut(s)	350, 553
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	350, 553
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	319
SaqAI	TTAA	4 cut(s)	11, 438, 561, 591
SatI	GCNGC	2 cut(s)	225, 249
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	3 cut(s)	143, 329, 559
ScrFI	CCNGG	2 cut(s)	352, 555
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	8 cut(s)	20, 41, 105, 277, 507, 525, 559, 574
SfaNI	GCATC	4 cut(s)	211, 375, 476, 613
SfcI	CTRYAG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	435, 514, 562
SsiI	CCGC	5 cut(s)	45, 224, 248, 430, 483
StyD4I	CCNGG	2 cut(s)	350, 553
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	435, 514, 562
TauI	GCSGC	2 cut(s)	227, 251
TfiI	GAWTC	3 cut(s)	152, 178, 584
Tru1I	TTAA	4 cut(s)	11, 438, 561, 591
Tru9I	TTAA	4 cut(s)	11, 438, 561, 591
TscAI	CASTG	2 cut(s)	460, 482
TspDTI	ATGAA	3 cut(s)	488, 518, 551
TspGWI	ACGGA	3 cut(s)	49, 344, 591
TspRI	CASTG	2 cut(s)	460, 482
Tth111I	GACNNNGTC	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.