Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00752

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

29088 .. 30564

Gene Structure 1477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G017040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAAACCCTAACGACCTCCTCCTCTTCTGCTACCTTCATGTCCTCCTCTTCCCCCTTTTCGATTTTCTCCCCAAGAAAAGCCCTCTCCTTCAGACCCTTTCACCTCCCGCTCGCTTCCAAAGGAAACGAAAATGGCTCCAATCCTCCTCCTCCTCAGTCGGATTCCAAAGAAACCAAGAACCTTCCGGTTCTCAGTAATCGCTACCTCTCCCTCTCCCCACTCTCCAAGGACGCGGCAATGGGATTGGTGATGGGTGCTGCCACAGGAAGAGGGTGGACTACAGGTTCTGGGATGGAGGGGCCTCCTGCACCTGCTGGGATTGAATCGCAATCTAGCACTGACAATGTCTCCACTTTTCCTTGGTCTCTCTTTACAAAGTCTCCTCGCCGGAGAATGCTCGTGGCTTTCACTTGCAACATTTGTGGGCAGCGGACAACTCGGGCAATCAATCCCCATGCATTCACTGATGGCACTGTCTTTGTGCAGTGTTGTGGATGCAATGCCTTTCATAAGCTTGTGGATAATTTGAACCTGTTTCATGAGATGAAGTGCTATGTGAGCCCAGGCTTTGATTACGGATGGGATGCTGTTAACTTCAAATATCTGGAAATGGACGATGGTGATGATGAAATATTTCCCTTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

216

Amino Acids

23.56

Weight (kDa)

6.41

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	135 - 184	2.2e-15	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	322
Acc36I	ACCTGC	1 cut(s)	322
AccBSI	CCGCTC	1 cut(s)	112
AccII	CGCG	1 cut(s)	236
AciI	CCGC	3 cut(s)	110, 236, 433
AcuI	CTGAAG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	326, 532, 601
AjnI	CCWGG	1 cut(s)	565
AloI	GAACNNNNNNTCC	2 cut(s)	271, 303
AluBI	AGCT	1 cut(s)	517
AluI	AGCT	1 cut(s)	517
Alw26I	GTCTC	3 cut(s)	355, 372, 387
AlwNI	CAGNNNCTG	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	260, 430
Asp700I	GAANNNNTTC	1 cut(s)	636
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	95, 262, 635
AvaI	CYCGRG	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	566
BauI	CACGAG	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	247, 442
BccI	CCATC	5 cut(s)	247, 289, 464, 576, 614
BciT130I	CCWGG	1 cut(s)	567
BcoDI	GTCTC	3 cut(s)	355, 372, 387
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	237, 261, 431
BlsI	GCNGC	3 cut(s)	238, 262, 432
Bme1390I	CCNGG	1 cut(s)	567
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	139, 303
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	488, 577
BsaI	GGTCTC	1 cut(s)	372
BsaJI	CCNNGG	3 cut(s)	228, 362, 565
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 367, 397
Bse3DI	GCAATG	2 cut(s)	246, 508
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	3 cut(s)	228, 362, 565
BseGI	GGATG	4 cut(s)	300, 503, 587, 592
BseMI	GCAATG	2 cut(s)	246, 508
BseMII	CTCAG	2 cut(s)	170, 208
BseRI	GAGGAG	7 cut(s)	10, 13, 37, 138, 141, 144, 375
BseXI	GCAGC	2 cut(s)	247, 442
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	2 cut(s)	294, 506
Bsh1236I	CGCG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	188, 391
BsmAI	GTCTC	3 cut(s)	355, 372, 387
BsmI	GAATGC	2 cut(s)	402, 461
BsnI	GGCC	1 cut(s)	304
Bso31I	GGTCTC	1 cut(s)	372
BsoBI	CYCGRG	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	566
BspACI	CCGC	3 cut(s)	110, 236, 433
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	169, 207
BspFNI	CGCG	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	139, 303
BspMI	ACCTGC	1 cut(s)	322
BspTNI	GGTCTC	1 cut(s)	372
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	2 cut(s)	246, 508
BssECI	CCNNGG	3 cut(s)	228, 362, 565
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	2 cut(s)	228, 362
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	3 cut(s)	31, 55, 265
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	156, 194
BstF5I	GGATG	4 cut(s)	300, 503, 587, 592
BstFNI	CGCG	1 cut(s)	236
BstMAI	GTCTC	3 cut(s)	355, 372, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	561
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	1 cut(s)	282
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	247, 442
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	4 cut(s)	300, 503, 587, 592
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	4 cut(s)	339, 465, 474, 494
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	3 cut(s)	40, 458, 542
CviJI	RGCY	7 cut(s)	83, 138, 304, 407, 517, 564, 570
CviKI_1	RGCY	7 cut(s)	83, 138, 304, 407, 517, 564, 570
DdeI	CTNAG	2 cut(s)	156, 194
Eam1104I	CTCTTC	3 cut(s)	31, 55, 265
EarI	CTCTTC	3 cut(s)	31, 55, 265
Eco130I	CCWWGG	2 cut(s)	228, 362
Eco24I	GRGCYC	1 cut(s)	566
Eco31I	GGTCTC	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	228, 362
EcoT22I	ATGCAT	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	566
ErhI	CCWWGG	2 cut(s)	228, 362
FaeI	CATG	3 cut(s)	43, 461, 545
FaiI	YATR	5 cut(s)	41, 459, 513, 543, 558
FatI	CATG	3 cut(s)	39, 457, 541
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	237, 261, 431
FokI	GGATG	4 cut(s)	307, 510, 594, 599
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	3 cut(s)	237, 261, 431
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	3 cut(s)	237, 261, 431
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	2 cut(s)	188, 391
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	43, 461, 545
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	2 cut(s)	164, 326
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	2 cut(s)	188, 391
HphI	GGTGA	3 cut(s)	95, 262, 635
Hpy166II	GTNNAC	2 cut(s)	279, 595
Hpy188I	TCNGA	2 cut(s)	95, 163
Hpy188III	TCNNGA	2 cut(s)	542, 608
Hpy8I	GTNNAC	2 cut(s)	279, 595
HpyAV	CCTTC	3 cut(s)	46, 100, 194
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	5 cut(s)	311, 417, 461, 487, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	561
HpyF3I	CTNAG	2 cut(s)	156, 194
Hsp92II	CATG	3 cut(s)	43, 461, 545
KspAI	GTTAAC	1 cut(s)	595
LmnI	GCTCC	1 cut(s)	143
Lsp1109I	GCAGC	2 cut(s)	247, 442
LweI	GCATC	2 cut(s)	488, 577
MaeI	CTAG	1 cut(s)	336
MbiI	CCGCTC	1 cut(s)	112
MboII	GAAGA	3 cut(s)	18, 42, 282
MhlI	GDGCHC	1 cut(s)	566
MluCI	AATT	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	2 cut(s)	188, 391
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	2 cut(s)	402, 461
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	561
NlaIII	CATG	3 cut(s)	43, 461, 545
NlaIV	GGNNCC	2 cut(s)	139, 303
NsiI	ATGCAT	1 cut(s)	463
PagI	TCATGA	1 cut(s)	541
PaqCI	CACCTGC	1 cut(s)	322
PctI	GAATGC	2 cut(s)	402, 461
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	164, 326
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	238, 262, 432
Psp6I	CCWGG	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	139, 303
PspPI	GGNCC	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	290
PsyI	GACNNNGTC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	3 cut(s)	237, 261, 431
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	566
SetI	ASST	9 cut(s)	20, 38, 108, 186, 210, 289, 316, 519, 537
SfaNI	GCATC	2 cut(s)	488, 577
SfcI	CTRYAG	1 cut(s)	282
Sse9I	AATT	1 cut(s)	526
SsiI	CCGC	3 cut(s)	110, 236, 433
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	2 cut(s)	228, 362
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	62
TasI	AATT	1 cut(s)	526
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	164, 326
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	4 cut(s)	346, 472, 481, 494
TseI	GCWGC	2 cut(s)	260, 430
TspDTI	ATGAA	5 cut(s)	28, 500, 530, 563, 645
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	4 cut(s)	346, 472, 481, 494
Tth111I	GACNNNGTC	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.