Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

13803469 .. 13805402

Gene Structure 1934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAAACCCTAACGACCTCCTCCTCCTCTTCTCCCTTCTCCATCTTCTCCCCCCGAAAATCCGTCTCCTTCAGACCCTTTCACCTCCCACTCGCTTCCAAAGGAAACGAAAATGGCTCCAATCCTCCTCAGTCGGACTCCAAAGAAATCAAGAACCTTCCGGTTCTCAGTAATCGCCACCTTTCCCTTTCTCCACTCTCCAAGGATGCGGCAATGGGATTGGTGATGGGTGCTGCAACAGGAAGAGGCTGGACTACAGGTTCTGGGATGGAAGGGCCTCCTACTCCTGCAGGGATCGACTCCCGATCAAGTACTGAGAATGTCTCCACTTTTCCTTGGTCTCTCTTTACAAAATCGCCTCGCCGTAGAATGCTTGTAGCTTTCACATGCAACATTTGTGGGCAGCGGACAACTCGGGCAATCAATCCCCATGCATTCACTGATGGCACTGTCTTTGTGCAGTGTTGTGGATGCAATGCCTTTCATAAGCTCGTGGATAATCTGAACCTGTTTCATGAGATGAAGTGCTATGTGAGCCCAGGCTTTGATTACAAAGGCAATGGTTGGGATGCTGTTAACTTCAAATATCTGGAAATGGAAGATGATGATGATGATGAAATATTTCCATTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

212

Amino Acids

23.19

Weight (kDa)

6.51

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	126 - 176	9.4e-16	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	209, 406
AclWI	GGATC	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	583
AjnI	CCWGG	1 cut(s)	538
AloI	GAACNNNNNNTCC	2 cut(s)	244, 276
AluBI	AGCT	2 cut(s)	380, 490
AluI	AGCT	2 cut(s)	380, 490
Alw26I	GTCTC	3 cut(s)	70, 328, 345
AlwI	GGATC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	2 cut(s)	233, 403
Asp700I	GAANNNNTTC	1 cut(s)	621
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	74, 235
AvaI	CYCGRG	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	539
BauI	CACGAG	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	220, 415
BccI	CCATC	4 cut(s)	50, 220, 262, 437
BceAI	ACGGC	1 cut(s)	348
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	3 cut(s)	70, 328, 345
BfmI	CTRYAG	2 cut(s)	255, 288
BisI	GCNGC	3 cut(s)	210, 234, 404
BlsI	GCNGC	3 cut(s)	211, 235, 405
BmcAI	AGTACT	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	540
BmeT110I	CYCGRG	1 cut(s)	414
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	196, 461, 559
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	3 cut(s)	201, 335, 538
BsaWI	WCCGGW	1 cut(s)	160
Bse3DI	GCAATG	3 cut(s)	219, 481, 565
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	3 cut(s)	201, 335, 538
BseGI	GGATG	4 cut(s)	211, 273, 476, 574
BseMI	GCAATG	3 cut(s)	219, 481, 565
BseMII	CTCAG	3 cut(s)	143, 181, 306
BseRI	GAGGAG	4 cut(s)	10, 13, 16, 117
BseXI	GCAGC	2 cut(s)	220, 415
BsgI	GTGCAG	1 cut(s)	479
BshFI	GGCC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	3 cut(s)	70, 328, 345
BsmBI	CGTCTC	1 cut(s)	70
BsmI	GAATGC	2 cut(s)	375, 434
BsnI	GGCC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	2 cut(s)	294, 305
BspACI	CCGC	2 cut(s)	209, 406
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	3 cut(s)	142, 180, 307
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	345
BsrDI	GCAATG	3 cut(s)	219, 481, 565
BssECI	CCNNGG	3 cut(s)	201, 335, 538
BssMI	GATC	2 cut(s)	294, 305
BssSI	CACGAG	1 cut(s)	491
BssT1I	CCWWGG	2 cut(s)	201, 335
Bst2BI	CACGAG	1 cut(s)	491
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	2 cut(s)	34, 238
BstDEI	CTNAG	3 cut(s)	129, 167, 315
BstF5I	GGATG	4 cut(s)	211, 273, 476, 574
BstKTI	GATC	2 cut(s)	297, 308
BstMAI	GTCTC	3 cut(s)	70, 328, 345
BstMBI	GATC	2 cut(s)	294, 305
BstMWI	GCNNNNNNNGC	1 cut(s)	534
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	2 cut(s)	255, 288
BstV1I	GCAGC	2 cut(s)	220, 415
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	4 cut(s)	211, 273, 476, 574
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	3 cut(s)	438, 447, 467
CaiI	CAGNNNCTG	1 cut(s)	263
CciI	TCATGA	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	312
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	3 cut(s)	387, 431, 515
CviJI	RGCY	7 cut(s)	117, 249, 277, 380, 490, 537, 543
CviKI_1	RGCY	7 cut(s)	117, 249, 277, 380, 490, 537, 543
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	3 cut(s)	129, 167, 315
DpnI	GATC	2 cut(s)	296, 307
DpnII	GATC	2 cut(s)	294, 305
Eam1104I	CTCTTC	2 cut(s)	34, 238
EarI	CTCTTC	2 cut(s)	34, 238
Eco130I	CCWWGG	2 cut(s)	201, 335
Eco24I	GRGCYC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	201, 335
EcoT22I	ATGCAT	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	2 cut(s)	201, 335
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	3 cut(s)	390, 434, 518
FaiI	YATR	5 cut(s)	388, 432, 486, 516, 531
FatI	CATG	3 cut(s)	386, 430, 514
Fnu4HI	GCNGC	3 cut(s)	210, 234, 404
FokI	GGATG	4 cut(s)	218, 280, 483, 581
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	3 cut(s)	210, 234, 404
GluI	GCNGC	3 cut(s)	210, 234, 404
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	3 cut(s)	390, 434, 518
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	2 cut(s)	137, 299
HpaI	GTTAAC	1 cut(s)	577
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	74, 235
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	3 cut(s)	74, 136, 504
Hpy188III	TCNNGA	4 cut(s)	151, 303, 515, 590
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	4 cut(s)	46, 79, 167, 266
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4V	TGCA	6 cut(s)	236, 290, 390, 434, 460, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	534
HpyF3I	CTNAG	3 cut(s)	129, 167, 315
Hsp92II	CATG	3 cut(s)	390, 434, 518
KspAI	GTTAAC	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	294, 305
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	2 cut(s)	220, 415
LweI	GCATC	3 cut(s)	196, 461, 559
MalI	GATC	2 cut(s)	296, 307
MboI	GATC	2 cut(s)	294, 305
MboII	GAAGA	4 cut(s)	21, 37, 255, 611
MhlI	GDGCHC	1 cut(s)	539
MlyI	GAGTC	2 cut(s)	131, 293
MmeI	TCCRAC	1 cut(s)	114
Mph1103I	ATGCAT	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	631
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	540
Mva1269I	GAATGC	2 cut(s)	375, 434
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	534
NdeII	GATC	2 cut(s)	294, 305
NlaIII	CATG	3 cut(s)	390, 434, 518
NlaIV	GGNNCC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	436
NspI	RCATGY	1 cut(s)	390
PagI	TCATGA	1 cut(s)	514
PctI	GAATGC	2 cut(s)	375, 434
PdmI	GAANNNNTTC	1 cut(s)	621
PkrI	GCNGC	3 cut(s)	211, 235, 405
PleI	GAGTC	2 cut(s)	131, 293
PpsI	GAGTC	2 cut(s)	131, 293
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	631
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	3 cut(s)	210, 234, 404
Sau3AI	GATC	2 cut(s)	294, 305
Sau96I	GGNCC	1 cut(s)	275
SbfI	CCTGCAGG	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	313
SchI	GAGTC	2 cut(s)	131, 293
ScrFI	CCNGG	1 cut(s)	540
SdaI	CCTGCAGG	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	8 cut(s)	20, 87, 159, 183, 262, 382, 492, 510
SfaNI	GCATC	3 cut(s)	196, 461, 559
SfcI	CTRYAG	2 cut(s)	255, 288
SmiMI	CAYNNNNRTG	1 cut(s)	631
Sse8387I	CCTGCAGG	1 cut(s)	292
SsiI	CCGC	2 cut(s)	209, 406
SspI	AATATT	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	2 cut(s)	201, 335
TaaI	ACNGT	1 cut(s)	451
TaqI	TCGA	1 cut(s)	297
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	3 cut(s)	445, 454, 467
TseI	GCWGC	2 cut(s)	233, 403
TspDTI	ATGAA	4 cut(s)	473, 503, 536, 630
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	3 cut(s)	445, 454, 467
XceI	RCATGY	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	621
ZrmI	AGTACT	1 cut(s)	313
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.