AT5G28910

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003432
Physical Location & Seq
Reverse (-)
10930539 .. 10933188
2650 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28910.1

Sequence Viewer

Length: 1227 bp
ATGTACCAAATGGTCCACATTTGGAGAATTGTGAGGAGAAGGCTCGAGTTAGGGAGCGTTTGGATACACGTTTGGCGAACTGGACACTTCCTCCTTGGTGGAGGAGATGAAGAGAATTATCCGTTAACGAGGAGAGTGCAAAGAGATATATGGATTCATCAGCATCCTTTGGATTGCGGAAACAAGAGTCTCAAGTTCCTTGTAGCTGATTGGGAAACACTTCCTGGTTTTGGAATAGGAGCTCAGATAGCTGGAATGACTGGTCTACTCGCGATAGCTATAAATGAAAACCGAGTGCTTGTTGCAAATTACTACAACCGAGCAGATCATGATGGTTGCAAAGGTTCTTTTCGTGGAAACTGGTCTTGCTATTTTCTACAGGAAACGTCAGAAGAGTGTCGAAAACGAGCCTTTGCGATTGTGAAGAAGAGAGAAGCGTGGGAGAGTGGGATTGTTACAGGGAAACAAAATTATAGCACAAAGGAGATTTGGGCTGGGGCTATACCAAAGCAATGGGGTAAGCCTTGGAGTTATATGAAGCCAACTACAGAAATCAACGGAAGTTTAATCTCCAATCATCGGAAAATGGATCGGAGATGGTGGAGAGCACAAGCAGTGAGATACTTGATGAGATATCAAACAGAATACACTTGCGGTTTGATGAACATTGCTCGAAATTCCGCGTTTGGAAAAGAAGCTGCCAAGATTGTTCTTTCAGCTGGAGATTGGAGAAAGAAGAATAAGAAGATGAGGACAGAGATTGAGGAACAGGTGTGGTCGGATCACAAGCCGTGGCTTCCAAGGCCAATGCTGAGTGTTCACGTACGGATGGGAGACAAAGCATGCGAGATGAGAGTCGCAGCTTTAGAAGAGTACATGCATTTAGCTGATCGGATCAGAGATCGGTTTCCAGAGCTCAACAGGATCTGGCTCTCTACAGAGATGAAGGAAGTGGTGGACAGAAGTAAAGATTATGCTCACTGGAGATTCTATTACACGGAAGTGGCAAGACAAGTCGGTAATAAGTCGATGGCTGAGTATGAAGCGAGCCTCGGGAGAGAGATGAGCACAAACTATCCTCTGGTTAACTTCTTAATGGCGTCAGAAGCTGATTTCTTCGTCGGAGCATTGGGTTCCACTTGGTGTTTCCTCATCGATGGTATGAGGAATACGGGTGGGAAAGTCATGTCTGGTTATCTCAGTGTCAATAAAGATCGGTTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

408

Amino Acids

47.69

Weight (kDa)

9.47

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 265
AccII CGCG 2 cut(s) 272, 683
AciI CCGC 3 cut(s) 177, 654, 681
AclWI GGATC 4 cut(s) 597, 789, 902, 932
AcsI RAATTY 1 cut(s) 676
AcyI GRCGYC 1 cut(s) 1100
AdeI CACNNNGTG 1 cut(s) 1143
AfaI GTAC 3 cut(s) 5, 825, 875
AfiI CCNNNNNNNGG 2 cut(s) 230, 579
AflIII ACRYGT 1 cut(s) 67
AjnI CCWGG 1 cut(s) 223
AleI CACNNNNGTG 1 cut(s) 1001
Alw21I GWGCWC 4 cut(s) 244, 610, 918, 1070
Alw26I GTCTC 2 cut(s) 194, 828
AlwI GGATC 4 cut(s) 597, 789, 902, 932
AlwNI CAGNNNCTG 2 cut(s) 927, 1109
Ama87I CYCGRG 2 cut(s) 44, 1052
AoxI GGCC 1 cut(s) 803
ApeKI GCWGC 2 cut(s) 698, 860
ApoI RAATTY 1 cut(s) 676
Asp700I GAANNNNTTC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 13
AvaI CYCGRG 2 cut(s) 44, 1052
AvaII GGWCC 1 cut(s) 13
BanII GRGCYC 2 cut(s) 244, 918
Bbv12I GWGCWC 4 cut(s) 244, 610, 918, 1070
BbvI GCAGC 2 cut(s) 685, 872
BccI CCATC 5 cut(s) 326, 591, 823, 1024, 1151
BceAI ACGGC 1 cut(s) 775
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 1 cut(s) 225
BciVI GTATCC 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 194, 828
BfmI CTRYAG 3 cut(s) 377, 546, 936
BfuI GTATCC 1 cut(s) 57
BisI GCNGC 2 cut(s) 699, 861
BlsI GCNGC 2 cut(s) 700, 862
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 13
BmeT110I CYCGRG 2 cut(s) 44, 1052
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 1135
BmrFI CCNGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 172
BpmI CTGGAG 2 cut(s) 741, 1003
BpuEI CTTGAG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 1155
BsaAI YACGTR 1 cut(s) 823
BsaHI GRCGYC 1 cut(s) 1100
BsaJI CCNNGG 5 cut(s) 94, 524, 791, 800, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 579
Bse1I ACTGG 4 cut(s) 85, 265, 365, 986
Bse3DI GCAATG 2 cut(s) 518, 666
BseBI CCWGG 1 cut(s) 225
BseCI ATCGAT 1 cut(s) 1155
BseDI CCNNGG 5 cut(s) 94, 524, 791, 800, 1051
BseGI GGATG 2 cut(s) 163, 834
BseLI CCNNNNNNNGG 2 cut(s) 230, 579
BseMI GCAATG 2 cut(s) 518, 666
BseMII CTCAG 4 cut(s) 257, 803, 1026, 1213
BseNI ACTGG 4 cut(s) 85, 265, 365, 986
BseRI GAGGAG 3 cut(s) 49, 117, 145
BseXI GCAGC 2 cut(s) 685, 872
BseYI CCCAGC 1 cut(s) 494
Bsh1236I CGCG 2 cut(s) 272, 683
BshFI GGCC 1 cut(s) 805
BshVI ATCGAT 1 cut(s) 1155
BsiHKAI GWGCWC 4 cut(s) 244, 610, 918, 1070
BsiHKCI CYCGRG 2 cut(s) 44, 1052
BsiWI CGTACG 1 cut(s) 823
BslI CCNNNNNNNGG 2 cut(s) 230, 579
BsmAI GTCTC 2 cut(s) 194, 828
BsnI GGCC 1 cut(s) 805
BsoBI CYCGRG 2 cut(s) 44, 1052
Bsp1286I GDGCHC 4 cut(s) 244, 610, 918, 1070
Bsp143I GATC 8 cut(s) 325, 589, 781, 889, 894, 901, 924, 1213
Bsp68I TCGCGA 1 cut(s) 272
BspACI CCGC 3 cut(s) 177, 654, 681
BspANI GGCC 1 cut(s) 805
BspCNI CTCAG 4 cut(s) 256, 804, 1027, 1212
BspDI ATCGAT 1 cut(s) 1155
BspFNI CGCG 2 cut(s) 272, 683
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 1135
BspPI GGATC 4 cut(s) 597, 789, 902, 932
BsrDI GCAATG 2 cut(s) 518, 666
BsrI ACTGG 4 cut(s) 85, 265, 365, 986
BssECI CCNNGG 5 cut(s) 94, 524, 791, 800, 1051
BssMI GATC 8 cut(s) 325, 589, 781, 889, 894, 901, 924, 1213
BssNI GRCGYC 1 cut(s) 1100
BssT1I CCWWGG 3 cut(s) 94, 524, 800
Bst2UI CCWGG 1 cut(s) 225
Bst6I CTCTTC 4 cut(s) 105, 387, 422, 864
BstACI GRCGYC 1 cut(s) 1100
BstBAI YACGTR 1 cut(s) 823
BstC8I GCNNGC 2 cut(s) 844, 1048
BstDEI CTNAG 4 cut(s) 243, 812, 1035, 1199
BstDSI CCRYGG 1 cut(s) 791
BstF5I GGATG 2 cut(s) 163, 834
BstFNI CGCG 2 cut(s) 272, 683
BstKTI GATC 8 cut(s) 328, 592, 784, 892, 897, 904, 927, 1216
BstMAI GTCTC 2 cut(s) 194, 828
BstMBI GATC 8 cut(s) 325, 589, 781, 889, 894, 901, 924, 1213
BstMWI GCNNNNNNNGC 3 cut(s) 248, 802, 1106
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 2 cut(s) 846, 880
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 3 cut(s) 377, 546, 936
BstUI CGCG 2 cut(s) 272, 683
BstV1I GCAGC 2 cut(s) 685, 872
BstX2I RGATCY 1 cut(s) 924
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 1 cut(s) 924
Bsu15I ATCGAT 1 cut(s) 1155
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 1 cut(s) 805
BsuTUI ATCGAT 1 cut(s) 1155
BtgI CCRYGG 1 cut(s) 791
BtsCI GGATG 2 cut(s) 163, 834
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 3 cut(s) 621, 979, 1207
BtuMI TCGCGA 1 cut(s) 272
Cac8I GCNNGC 2 cut(s) 844, 1048
CaiI CAGNNNCTG 2 cut(s) 927, 1109
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 1155
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 3 cut(s) 4, 824, 874
CviAII CATG 4 cut(s) 329, 843, 877, 1186
CviQI GTAC 3 cut(s) 4, 824, 874
DdeI CTNAG 4 cut(s) 243, 812, 1035, 1199
DpnI GATC 8 cut(s) 327, 591, 783, 891, 896, 903, 926, 1215
DpnII GATC 8 cut(s) 325, 589, 781, 889, 894, 901, 924, 1213
DraIII CACNNNGTG 1 cut(s) 1143
Eam1104I CTCTTC 4 cut(s) 105, 387, 422, 864
EarI CTCTTC 4 cut(s) 105, 387, 422, 864
Ecl136II GAGCTC 2 cut(s) 242, 916
Eco130I CCWWGG 3 cut(s) 94, 524, 800
Eco24I GRGCYC 2 cut(s) 244, 918
Eco32I GATATC 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 2 cut(s) 242, 916
Eco88I CYCGRG 2 cut(s) 44, 1052
EcoICRI GAGCTC 2 cut(s) 242, 916
EcoRII CCWGG 1 cut(s) 223
EcoRV GATATC 1 cut(s) 635
EcoT14I CCWWGG 3 cut(s) 94, 524, 800
EcoT22I ATGCAT 1 cut(s) 882
EcoT38I GRGCYC 2 cut(s) 244, 918
ErhI CCWWGG 3 cut(s) 94, 524, 800
FaeI CATG 4 cut(s) 332, 846, 880, 1189
FatI CATG 4 cut(s) 328, 842, 876, 1185
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 699, 861
FokI GGATG 2 cut(s) 150, 841
FriOI GRGCYC 2 cut(s) 244, 918
Fsp4HI GCNGC 2 cut(s) 699, 861
GluI GCNGC 2 cut(s) 699, 861
GsaI CCCAGC 1 cut(s) 498
GsuI CTGGAG 2 cut(s) 741, 1003
HaeIII GGCC 1 cut(s) 805
HgaI GACGC 1 cut(s) 1089
Hin1I GRCGYC 1 cut(s) 1100
Hin1II CATG 4 cut(s) 332, 846, 880, 1189
HincII GTYRAC 2 cut(s) 126, 1087
HindII GTYRAC 2 cut(s) 126, 1087
HinfI GANTC 4 cut(s) 154, 187, 855, 987
HpaI GTTAAC 2 cut(s) 126, 1087
Hpy166II GTNNAC 6 cut(s) 16, 126, 266, 820, 958, 1087
Hpy188I TCNGA 9 cut(s) 246, 391, 582, 594, 781, 894, 899, 1105, 1124
Hpy188III TCNNGA 4 cut(s) 271, 329, 911, 1054
Hpy8I GTNNAC 6 cut(s) 16, 126, 266, 820, 958, 1087
Hpy99I CGWCG 1 cut(s) 1124
HpyAV CCTTC 2 cut(s) 33, 940
HpyCH4IV ACGT 3 cut(s) 69, 386, 822
HpyCH4V TGCA 4 cut(s) 139, 305, 339, 880
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 802, 1106
HpyF3I CTNAG 4 cut(s) 243, 812, 1035, 1199
HpySE526I ACGT 3 cut(s) 69, 386, 822
Hsp92I GRCGYC 1 cut(s) 1100
Hsp92II CATG 4 cut(s) 332, 846, 880, 1189
KspAI GTTAAC 2 cut(s) 126, 1087
Kzo9I GATC 8 cut(s) 325, 589, 781, 889, 894, 901, 924, 1213
LmnI GCTCC 3 cut(s) 54, 239, 1124
Lsp1109I GCAGC 2 cut(s) 685, 872
LweI GCATC 1 cut(s) 172
MaeII ACGT 3 cut(s) 69, 386, 822
MaeIII GTNAC 1 cut(s) 454
MalI GATC 8 cut(s) 327, 591, 783, 891, 896, 903, 926, 1215
MboI GATC 8 cut(s) 325, 589, 781, 889, 894, 901, 924, 1213
MboII GAAGA 8 cut(s) 122, 404, 436, 439, 748, 757, 881, 1108
MflI RGATCY 1 cut(s) 924
MhlI GDGCHC 4 cut(s) 244, 610, 918, 1070
MluCI AATT 5 cut(s) 27, 115, 307, 469, 676
MlyI GAGTC 2 cut(s) 196, 864
MmeI TCCRAC 2 cut(s) 759, 1102
Mph1103I ATGCAT 1 cut(s) 882
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 4 cut(s) 125, 566, 1086, 1094
MslI CAYNNNNRTG 1 cut(s) 1001
MspA1I CMGCKG 1 cut(s) 719
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MvnI CGCG 2 cut(s) 272, 683
MwoI GCNNNNNNNGC 3 cut(s) 248, 802, 1106
NdeII GATC 8 cut(s) 325, 589, 781, 889, 894, 901, 924, 1213
NlaIII CATG 4 cut(s) 332, 846, 880, 1189
NlaIV GGNNCC 1 cut(s) 1135
NruI TCGCGA 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 882
NspI RCATGY 2 cut(s) 846, 880
OliI CACNNNNGTG 1 cut(s) 1001
PaeI GCATGC 1 cut(s) 846
PaeR7I CTCGAG 1 cut(s) 44
PagI TCATGA 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 2 cut(s) 154, 987
Pfl23II CGTACG 1 cut(s) 823
PkrI GCNGC 2 cut(s) 700, 862
PleI GAGTC 2 cut(s) 195, 863
PpsI GAGTC 2 cut(s) 195, 863
Ppu21I YACGTR 1 cut(s) 823
Psp124BI GAGCTC 2 cut(s) 244, 918
Psp6I CCWGG 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 1 cut(s) 223
PspLI CGTACG 1 cut(s) 823
PspN4I GGNNCC 1 cut(s) 1135
PspPI GGNCC 1 cut(s) 13
PspXI VCTCGAGB 1 cut(s) 44
PstNI CAGNNNCTG 2 cut(s) 927, 1109
PsuI RGATCY 1 cut(s) 924
PvuII CAGCTG 1 cut(s) 719
RruI TCGCGA 1 cut(s) 272
RsaI GTAC 3 cut(s) 5, 825, 875
RsaNI GTAC 3 cut(s) 4, 824, 874
RseI CAYNNNNRTG 1 cut(s) 1001
SacI GAGCTC 2 cut(s) 244, 918
SaqAI TTAA 4 cut(s) 125, 566, 1086, 1094
SatI GCNGC 2 cut(s) 699, 861
Sau3AI GATC 8 cut(s) 325, 589, 781, 889, 894, 901, 924, 1213
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 2 cut(s) 196, 864
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 4 cut(s) 244, 610, 918, 1070
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 3 cut(s) 377, 546, 936
Sfr274I CTCGAG 1 cut(s) 44
SinI GGWCC 1 cut(s) 13
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 1001
SmlI CTYRAG 2 cut(s) 44, 191
SmoI CTYRAG 2 cut(s) 44, 191
SphI GCATGC 1 cut(s) 846
Sse9I AATT 5 cut(s) 27, 115, 307, 469, 676
SsiI CCGC 3 cut(s) 177, 654, 681
SstI GAGCTC 2 cut(s) 244, 918
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 3 cut(s) 94, 524, 800
TaiI ACGT 3 cut(s) 72, 389, 825
TaqI TCGA 5 cut(s) 45, 400, 673, 1028, 1155
TasI AATT 5 cut(s) 27, 115, 307, 469, 676
TatI WGTACW 1 cut(s) 873
TfiI GAWTC 2 cut(s) 154, 987
Tru1I TTAA 4 cut(s) 125, 566, 1086, 1094
Tru9I TTAA 4 cut(s) 125, 566, 1086, 1094
TscAI CASTG 3 cut(s) 621, 986, 1207
TseI GCWGC 2 cut(s) 698, 860
TspDTI ATGAA 7 cut(s) 123, 146, 300, 551, 677, 959, 1056
TspGWI ACGGA 4 cut(s) 111, 573, 841, 1013
TspRI CASTG 3 cut(s) 621, 986, 1207
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 676
XceI RCATGY 2 cut(s) 846, 880
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.