Rroxscaffold_6G00427460

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
48050159 .. 48054264
4106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427460.1

Sequence Viewer

Length: 1713 bp
ATGGAACCATTAAATCAGAAGTCTATAGAGAGAGTGGTTTCACAGAAGGCTTTGCAAATGGGGAGTTCATTTCCATGTCAAATCTGTGTGGTGGGTTTGCTCTGTGGAATCTGTCTTACTTCTTTGTTTATGGCTGCTCTCACTTCATTTGGTACTTTCGAGTTTGGTGGGTTTTCGTTTTCAACCATTGCTGGGGGTGCTTCAGCTGGGCATGCAAGCTCAGAGTTCATCAACTGCAGTTCTGAACCAATGATAACAGAGAGAGTGGTAGTCAATTCGCTTAGAAGTGAAGAAACCATCAATAGTGAGAGAGGCTCATTATTGTATTCAGCTTGGAGTGCTTTACTAACTGAATCAGATTCTGGAAAAAGTGATTACTTGCAGAGAAGTGGACTAAACAGATCCAGTGTGCCAAACGCCCCTCATTTGGAAAACTGCAAGTTGAAAGGACAAGTATACAAGCACCTTGATAAACATACCGAGAATGAGAGCCATCCAACAGCTGCAACAAATGAGCAGTCTAGCTATTTTAGGAATCAAGCTACGTCTGAAGCTGCTTATGCTCCTTGGATTACAGGGTCTGACGAAGAAAATTACCCGTCAACACGAAAAGTGCAACGAGACATATGGCTGCATCAGCATCCTCTGAACTGCAGGGATCCTAGTGTAAAGTTTCTCGTAGCTGACTGGGAAAGATTACCTGGATTTGGTATTGGAGCCCAGATTGCTGGAATGTGTGGACTTCTTGCAATTGCAATGAAGGAAAAAAGGGTCCTTGTTACCAACTACTTTAATCGAGCTGACCATGATGGTTGCAAAGGTTCGTCCCGCTCCAGTTGGTCCTGTTATTTTTTCCCAGAAACATCCCTAGAATGTCGAAATCGTGCATTGGAGCTTATAGAAAGCGAAGATGCCTGGAAAAGTGGCACCATCAAGGCAAAAGATAATTATACTTCAAAGGAAATATGGGCTGGACGAACACCTAGAATATGGGGTGATCCTTGGAGTCATTTGCAACCAACAACAGAAATAAATGGGACTTTGATTGCTTATCATCGCAAAATGGATCGAAGGTGGTGGCGAGCACAGGCAGTACGATACTTGATGCGATTTCAAACCGAGTACACATGTGACTTGCTGAATGTTGCTCGCCATGCGGCATTTGGAAAGCAAGCTGCCGATATGGTAGTCAGAAATTTCGAGGGGGAATGGTCCAAGGATGTTACAGTGAATGAAAAGTCAGATATTGAAGAGTTTGTTTGGTCTAATCACAAGCCATGGATGCCTAGGCCACTACTGAGCATGCATGTAAGGATGGGAGACAAAGCATGTGAAATGAAGGTAGTTGAATTTCAAGAATACATGAGTCTTGCTGGCCGCATTAGAAAGCGATTTCCACAGCTCAACAGTGTGTGGCTTTCCACTGAAATGCAGGAAGTGATTGATAAATCTAAAGGATACCCTCATTGGGACTTCTACTACACAAATGTGACACGTCAAATGGGAAACATGACAATGGCTACTTATGAAACAAGTCTTGGTAGAAAAACCAGCACGAACTACCCGGTTGTCAATTTCTTGATGGCAACCGAAGCTGACTTTTTCATTGGAGCGTTGGGTTCTACTTGGTGCTTCCTTATAGATGGAATGAGAAACACCGGAGGGAAAGTAATGGCTGGATATTTGAGTGTCAACAAGGACCGTTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

570

Amino Acids

64.7

Weight (kDa)

7.87

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 926
AccBSI CCGCTC 1 cut(s) 831
AccI GTMKAC 1 cut(s) 456
AciI CCGC 3 cut(s) 829, 1157, 1378
AclWI GGATC 5 cut(s) 396, 653, 666, 992, 1074
AcoI YGGCCR 1 cut(s) 1375
AcsI RAATTY 2 cut(s) 1195, 1349
AcuI CTGAAG 2 cut(s) 186, 570
AfaI GTAC 3 cut(s) 154, 1095, 1124
AfiI CCNNNNNNNGG 4 cut(s) 192, 427, 707, 1468
AflIII ACRYGT 2 cut(s) 1127, 1493
AgsI TTSAA 7 cut(s) 183, 445, 957, 1115, 1250, 1349, 1355
AjiI CACGTC 1 cut(s) 1496
AjnI CCWGG 2 cut(s) 700, 914
AjuI GAANNNNNNNTTGG 2 cut(s) 1521, 1553
AleI CACNNNNGTG 1 cut(s) 1487
Alw21I GWGCWC 1 cut(s) 1087
Alw26I GTCTC 2 cut(s) 615, 1314
AlwI GGATC 5 cut(s) 396, 653, 666, 992, 1074
AlwNI CAGNNNCTG 2 cut(s) 362, 581
AoxI GGCC 2 cut(s) 1289, 1375
ApeKI GCWGC 5 cut(s) 134, 503, 554, 631, 1175
ApoI RAATTY 2 cut(s) 1195, 1349
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
AspA2I CCTAGG 1 cut(s) 1286
AspS9I GGNCC 4 cut(s) 772, 840, 1212, 1699
AsuC2I CCSGG 1 cut(s) 1565
AsuHPI GGTGA 1 cut(s) 1007
AvaII GGWCC 4 cut(s) 772, 840, 1212, 1699
AvrII CCTAGG 1 cut(s) 1286
BamHI GGATCC 1 cut(s) 658
BanI GGYRCC 1 cut(s) 926
BanII GRGCYC 1 cut(s) 721
Bbv12I GWGCWC 1 cut(s) 1087
BbvI GCAGC 5 cut(s) 121, 490, 541, 618, 1162
BccI CCATC 7 cut(s) 305, 501, 803, 938, 1309, 1576, 1637
BciT130I CCWGG 2 cut(s) 702, 916
BciVI GTATCC 1 cut(s) 1451
BcnI CCSGG 1 cut(s) 1565
BcoDI GTCTC 2 cut(s) 615, 1314
BfaI CTAG 5 cut(s) 522, 663, 869, 984, 1287
BfmI CTRYAG 3 cut(s) 24, 235, 652
BfuI GTATCC 1 cut(s) 1451
BisI GCNGC 7 cut(s) 135, 504, 555, 632, 1158, 1176, 1378
BlnI CCTAGG 1 cut(s) 1286
BlsI GCNGC 7 cut(s) 136, 505, 556, 633, 1159, 1177, 1379
Bme1390I CCNGG 3 cut(s) 702, 916, 1565
Bme18I GGWCC 4 cut(s) 772, 840, 1212, 1699
BmgBI CACGTC 1 cut(s) 1496
BmgT120I GGNCC 4 cut(s) 772, 840, 1212, 1699
BmiI GGNNCC 5 cut(s) 6, 660, 718, 773, 928
BmrFI CCNGG 3 cut(s) 702, 916, 1565
BmrI ACTGGG 1 cut(s) 697
BmsI GCATC 5 cut(s) 643, 649, 901, 1095, 1272
BmuI ACTGGG 1 cut(s) 697
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 817
BpuMI CCSGG 1 cut(s) 1565
BsaJI CCNNGG 5 cut(s) 566, 1001, 1215, 1277, 1286
BsaWI WCCGGW 1 cut(s) 1658
BsaXI ACNNNNNCTCC 2 cut(s) 1653, 1683
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 427, 707, 1468
Bse1I ACTGG 3 cut(s) 405, 692, 834
Bse3DI GCAATG 2 cut(s) 186, 762
BseBI CCWGG 2 cut(s) 702, 916
BseDI CCNNGG 5 cut(s) 566, 1001, 1215, 1277, 1286
BseGI GGATG 6 cut(s) 493, 640, 863, 1225, 1287, 1320
BseLI CCNNNNNNNGG 4 cut(s) 192, 427, 707, 1468
BseMI GCAATG 2 cut(s) 186, 762
BseMII CTCAG 2 cut(s) 234, 1289
BseNI ACTGG 3 cut(s) 405, 692, 834
BseXI GCAGC 5 cut(s) 121, 490, 541, 618, 1162
BseYI CCCAGC 2 cut(s) 191, 206
BshFI GGCC 2 cut(s) 1291, 1377
BshNI GGYRCC 1 cut(s) 926
BsiHKAI GWGCWC 1 cut(s) 1087
BsiSI CCGG 2 cut(s) 1565, 1659
BslFI GGGAC 3 cut(s) 811, 1051, 1484
BslI CCNNNNNNNGG 4 cut(s) 192, 427, 707, 1468
BsmAI GTCTC 2 cut(s) 615, 1314
BsmFI GGGAC 3 cut(s) 811, 1051, 1484
BsnI GGCC 2 cut(s) 1291, 1377
Bsp1286I GDGCHC 2 cut(s) 721, 1087
Bsp143I GATC 4 cut(s) 401, 658, 997, 1066
Bsp19I CCATGG 1 cut(s) 1277
BspACI CCGC 3 cut(s) 829, 1157, 1378
BspANI GGCC 2 cut(s) 1291, 1377
BspCNI CTCAG 2 cut(s) 233, 1290
BspLI GGNNCC 5 cut(s) 6, 660, 718, 773, 928
BspMAI CTGCAG 2 cut(s) 239, 656
BspPI GGATC 5 cut(s) 396, 653, 666, 992, 1074
BspT107I GGYRCC 1 cut(s) 926
BsrBI CCGCTC 1 cut(s) 831
BsrDI GCAATG 2 cut(s) 186, 762
BsrI ACTGG 3 cut(s) 405, 692, 834
BssECI CCNNGG 5 cut(s) 566, 1001, 1215, 1277, 1286
BssMI GATC 4 cut(s) 401, 658, 997, 1066
BssNAI GTATAC 1 cut(s) 457
BssT1I CCWWGG 5 cut(s) 566, 1001, 1215, 1277, 1286
Bst1107I GTATAC 1 cut(s) 457
Bst2UI CCWGG 2 cut(s) 702, 916
Bst4CI ACNGT 3 cut(s) 1228, 1409, 1703
Bst6I CTCTTC 1 cut(s) 1245
BstC8I GCNNGC 7 cut(s) 213, 217, 1083, 1150, 1173, 1304, 1375
BstDEI CTNAG 3 cut(s) 220, 281, 1298
BstDSI CCRYGG 1 cut(s) 1277
BstF5I GGATG 6 cut(s) 493, 640, 863, 1225, 1287, 1320
BstKTI GATC 4 cut(s) 404, 661, 1000, 1069
BstMAI GTCTC 2 cut(s) 615, 1314
BstMBI GATC 4 cut(s) 401, 658, 997, 1066
BstMWI GCNNNNNNNGC 9 cut(s) 197, 212, 338, 560, 637, 725, 1154, 1282, 1592
BstNI CCWGG 2 cut(s) 702, 916
BstNSI RCATGY 5 cut(s) 215, 1131, 1306, 1310, 1332
BstSCI CCNGG 3 cut(s) 700, 914, 1563
BstSFI CTRYAG 3 cut(s) 24, 235, 652
BstV1I GCAGC 5 cut(s) 121, 490, 541, 618, 1162
BstX2I RGATCY 2 cut(s) 401, 658
BstXI CCANNNNNNTGG 1 cut(s) 728
BstYI RGATCY 2 cut(s) 401, 658
BstZ17I GTATAC 1 cut(s) 457
BsuI GTATCC 1 cut(s) 1451
BsuRI GGCC 2 cut(s) 1291, 1377
BtgI CCRYGG 1 cut(s) 1277
BtgZI GCGATG 1 cut(s) 1040
BtrI CACGTC 1 cut(s) 1496
BtsCI GGATG 6 cut(s) 493, 640, 863, 1225, 1287, 1320
BtsIMutI CAGTG 4 cut(s) 412, 1233, 1414, 1422
Cac8I GCNNGC 7 cut(s) 213, 217, 1083, 1150, 1173, 1304, 1375
CaiI CAGNNNCTG 2 cut(s) 362, 581
Cfr13I GGNCC 4 cut(s) 772, 840, 1212, 1699
Csp6I GTAC 3 cut(s) 153, 1094, 1123
CviQI GTAC 3 cut(s) 153, 1094, 1123
DdeI CTNAG 3 cut(s) 220, 281, 1298
DpnI GATC 4 cut(s) 403, 660, 999, 1068
DpnII GATC 4 cut(s) 401, 658, 997, 1066
EaeI YGGCCR 1 cut(s) 1375
Eam1104I CTCTTC 1 cut(s) 1245
EarI CTCTTC 1 cut(s) 1245
Eco130I CCWWGG 5 cut(s) 566, 1001, 1215, 1277, 1286
Eco24I GRGCYC 1 cut(s) 721
Eco47I GGWCC 4 cut(s) 772, 840, 1212, 1699
Eco57I CTGAAG 2 cut(s) 186, 570
EcoO109I RGGNCCY 1 cut(s) 772
EcoRII CCWGG 2 cut(s) 700, 914
EcoT14I CCWWGG 5 cut(s) 566, 1001, 1215, 1277, 1286
EcoT22I ATGCAT 1 cut(s) 1308
EcoT38I GRGCYC 1 cut(s) 721
ErhI CCWWGG 5 cut(s) 566, 1001, 1215, 1277, 1286
FaqI GGGAC 3 cut(s) 811, 1051, 1484
FauI CCCGC 1 cut(s) 836
FauNDI CATATG 1 cut(s) 626
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 7 cut(s) 135, 504, 555, 632, 1158, 1176, 1378
FokI GGATG 6 cut(s) 480, 627, 850, 1232, 1294, 1327
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 7 cut(s) 135, 504, 555, 632, 1158, 1176, 1378
FspBI CTAG 5 cut(s) 522, 663, 869, 984, 1287
GluI GCNGC 7 cut(s) 135, 504, 555, 632, 1158, 1176, 1378
GsaI CCCAGC 2 cut(s) 195, 210
GsuI CTGGAG 1 cut(s) 817
HaeIII GGCC 2 cut(s) 1291, 1377
HapII CCGG 2 cut(s) 1565, 1659
HincII GTYRAC 2 cut(s) 603, 1693
HindII GTYRAC 2 cut(s) 603, 1693
HinfI GANTC 6 cut(s) 108, 353, 359, 535, 1006, 1366
HpaII CCGG 2 cut(s) 1565, 1659
HphI GGTGA 1 cut(s) 1007
Hpy166II GTNNAC 6 cut(s) 392, 457, 603, 740, 1125, 1693
Hpy188I TCNGA 9 cut(s) 18, 223, 244, 358, 550, 583, 648, 1193, 1243
Hpy188III TCNNGA 3 cut(s) 363, 1355, 1579
Hpy8I GTNNAC 6 cut(s) 392, 457, 603, 740, 1125, 1693
HpyAV CCTTC 4 cut(s) 40, 754, 1065, 1333
HpyCH4III ACNGT 3 cut(s) 1228, 1409, 1703
HpyCH4IV ACGT 2 cut(s) 545, 1495
HpyF10VI GCNNNNNNNGC 9 cut(s) 197, 212, 338, 560, 637, 725, 1154, 1282, 1592
HpyF3I CTNAG 3 cut(s) 220, 281, 1298
HpySE526I ACGT 2 cut(s) 545, 1495
Kzo9I GATC 4 cut(s) 401, 658, 997, 1066
LmnI GCTCC 5 cut(s) 568, 716, 836, 892, 1610
Lsp1109I GCAGC 5 cut(s) 121, 490, 541, 618, 1162
LweI GCATC 5 cut(s) 643, 649, 901, 1095, 1272
MaeI CTAG 5 cut(s) 522, 663, 869, 984, 1287
MaeII ACGT 2 cut(s) 545, 1495
MaeIII GTNAC 4 cut(s) 778, 1130, 1222, 1489
MalI GATC 4 cut(s) 403, 660, 999, 1068
MbiI CCGCTC 1 cut(s) 831
MboI GATC 4 cut(s) 401, 658, 997, 1066
MboII GAAGA 4 cut(s) 302, 599, 920, 1262
MfeI CAATTG 1 cut(s) 750
MflI RGATCY 2 cut(s) 401, 658
MhlI GDGCHC 2 cut(s) 721, 1087
MluCI AATT 7 cut(s) 274, 592, 750, 946, 1195, 1349, 1573
MlyI GAGTC 2 cut(s) 1015, 1375
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 6 cut(s) 305, 432, 654, 1195, 1473, 1655
Mph1103I ATGCAT 1 cut(s) 1308
MseI TTAA 2 cut(s) 11, 792
MslI CAYNNNNRTG 4 cut(s) 73, 1427, 1487, 1514
MspA1I CMGCKG 2 cut(s) 206, 503
MspI CCGG 2 cut(s) 1565, 1659
MspR9I CCNGG 3 cut(s) 702, 916, 1565
MunI CAATTG 1 cut(s) 750
MvaI CCWGG 2 cut(s) 702, 916
MwoI GCNNNNNNNGC 9 cut(s) 197, 212, 338, 560, 637, 725, 1154, 1282, 1592
NciI CCSGG 1 cut(s) 1565
NcoI CCATGG 1 cut(s) 1277
NdeI CATATG 1 cut(s) 626
NdeII GATC 4 cut(s) 401, 658, 997, 1066
NlaIV GGNNCC 5 cut(s) 6, 660, 718, 773, 928
NmuCI GTSAC 2 cut(s) 1130, 1489
NsiI ATGCAT 1 cut(s) 1308
NspI RCATGY 5 cut(s) 215, 1131, 1306, 1310, 1332
OliI CACNNNNGTG 1 cut(s) 1487
PaeI GCATGC 2 cut(s) 215, 1306
PciI ACATGT 1 cut(s) 1127
PfeI GAWTC 4 cut(s) 108, 353, 359, 535
PkrI GCNGC 7 cut(s) 136, 505, 556, 633, 1159, 1177, 1379
PleI GAGTC 2 cut(s) 1014, 1374
PpsI GAGTC 2 cut(s) 1014, 1374
PpuMI RGGWCCY 1 cut(s) 772
PscI ACATGT 1 cut(s) 1127
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 2 cut(s) 700, 914
PspFI CCCAGC 2 cut(s) 191, 206
PspGI CCWGG 2 cut(s) 700, 914
PspN4I GGNNCC 5 cut(s) 6, 660, 718, 773, 928
PspPI GGNCC 4 cut(s) 772, 840, 1212, 1699
PspPPI RGGWCCY 1 cut(s) 772
PstI CTGCAG 2 cut(s) 239, 656
PstNI CAGNNNCTG 2 cut(s) 362, 581
PsuI RGATCY 2 cut(s) 401, 658
PvuII CAGCTG 2 cut(s) 206, 503
RsaI GTAC 3 cut(s) 154, 1095, 1124
RsaNI GTAC 3 cut(s) 153, 1094, 1123
RseI CAYNNNNRTG 4 cut(s) 73, 1427, 1487, 1514
SaqAI TTAA 2 cut(s) 11, 792
SatI GCNGC 7 cut(s) 135, 504, 555, 632, 1158, 1176, 1378
Sau3AI GATC 4 cut(s) 401, 658, 997, 1066
Sau96I GGNCC 4 cut(s) 772, 840, 1212, 1699
SchI GAGTC 2 cut(s) 1015, 1375
ScrFI CCNGG 3 cut(s) 702, 916, 1565
SduI GDGCHC 2 cut(s) 721, 1087
SfaNI GCATC 5 cut(s) 643, 649, 901, 1095, 1272
SfcI CTRYAG 3 cut(s) 24, 235, 652
SinI GGWCC 4 cut(s) 772, 840, 1212, 1699
SmiMI CAYNNNNRTG 4 cut(s) 73, 1427, 1487, 1514
SphI GCATGC 2 cut(s) 215, 1306
Sse9I AATT 7 cut(s) 274, 592, 750, 946, 1195, 1349, 1573
SsiI CCGC 3 cut(s) 829, 1157, 1378
SspMI CTAG 5 cut(s) 522, 663, 869, 984, 1287
StyD4I CCNGG 3 cut(s) 700, 914, 1563
StyI CCWWGG 5 cut(s) 566, 1001, 1215, 1277, 1286
TaaI ACNGT 3 cut(s) 1228, 1409, 1703
TaiI ACGT 2 cut(s) 548, 1498
TaqI TCGA 5 cut(s) 159, 796, 877, 1069, 1200
TasI AATT 7 cut(s) 274, 592, 750, 946, 1195, 1349, 1573
TatI WGTACW 1 cut(s) 1122
TauI GCSGC 2 cut(s) 1160, 1380
TfiI GAWTC 4 cut(s) 108, 353, 359, 535
Tru1I TTAA 2 cut(s) 11, 792
Tru9I TTAA 2 cut(s) 11, 792
TscAI CASTG 4 cut(s) 412, 1233, 1414, 1429
TseFI GTSAC 2 cut(s) 1130, 1489
TseI GCWGC 5 cut(s) 134, 503, 554, 631, 1175
Tsp45I GTSAC 2 cut(s) 1130, 1489
TspDTI ATGAA 8 cut(s) 57, 135, 217, 773, 1248, 1352, 1542, 1594
TspRI CASTG 4 cut(s) 412, 1233, 1414, 1429
VpaK11BI GGWCC 4 cut(s) 772, 840, 1212, 1699
XapI RAATTY 2 cut(s) 1195, 1349
XceI RCATGY 5 cut(s) 215, 1131, 1306, 1310, 1332
XcmI CCANNNNNNNNNTGG 1 cut(s) 1160
XmaJI CCTAGG 1 cut(s) 1286
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 5 cut(s) 522, 663, 869, 984, 1287
Zsp2I ATGCAT 1 cut(s) 1308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.