Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8438485.1

Orthogroup ID

OG0003432

Physical Location & Seq

Genomic Coordinates Reverse (-)

110 .. 1513

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8438485.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgatggttgcaaaggttcgtcccgctccagttgaaagtgaagatgcctggaaaagtggcaccatcaaggcaaaagataattatacttcaaaggaaatatgggctggacaaacacctagaatatggggtgatccttggagtcatttgcaaccaacaacagaaataaatgggactttgattgcttatcatcgcaaaatggatcgaaggtggtggcgagcacaggcagtacgatacttgatgcgatttcaaaccgagtacacatgtgacttgctgaatgttgctcgccatgcggcatttggaaagcaagctgccgatatggtagtcagaaatttcgagggggaatggtccaaggatgttacagtgaatgaaaggtcagatattgaagagtttgtttggtctaatcacaagccatggatgcctaggccactactgagcatgcatgtaaggatgggagacaaagcatgtgaaatgaaggtagttgaatttcaagaatacatgagtcttgctggccgcattagaaagcgatttccacagctcaacagtgtttggctttccactgaaatgcaggaagtgattgataaatctaaaggataccctcattgggacttctactacacaaatgtgacacgtcaagtgggaaacatgacaatggctgcttatgaaacaagtcttggtagaaaaaccagcacgaactacccgcttgtcaatttcttgatggcaaccgaagctgactttttcattggagcgttgggttctacttggtgcttccttatagatggaatgagaaacaccggagggaaagttatggctggatatttgagtgtcaacaaggaccgtttctggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

32.75

Weight (kDa)

9.12

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28910 AT5G28910 AT5G28960
fragaria_vesca	FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760
malus_domestica	MD04G1231000.v1.1 MD12G1249300.v1.1
prunus_persica	Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1
pyrus_communis	pycom04g20460
rosa_chinensis	RchiOBHm_Chr3g0449501
rosa_laevigata	RLG00000025821
rosa_multiflora	Rmu_co8438485.1_g000001 Rmu_sc0000430.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427460
rosa_rugosa	Rorug02G0621800 Rorug02G0621900 Rorug02G0622000 Rorug02G0622000
rosa_samantha	Rh3AG019900 Rh3BG019900 Rh3CG018600 Rh3DG019900
rosa_wichuraiana	Rw3G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 290, 511, 698
AclWI	GGATC	2 cut(s)	125, 207
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	328, 482
AfaI	GTAC	2 cut(s)	228, 257
AfiI	CCNNNNNNNGG	1 cut(s)	601
AflIII	ACRYGT	2 cut(s)	260, 626
AgsI	TTSAA	6 cut(s)	35, 90, 248, 383, 482, 488
AjiI	CACGTC	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	47
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AleI	CACNNNNGTG	1 cut(s)	620
AluBI	AGCT	3 cut(s)	308, 535, 728
AluI	AGCT	3 cut(s)	308, 535, 728
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	125, 207
AoxI	GGCC	2 cut(s)	422, 508
ApeKI	GCWGC	2 cut(s)	308, 653
ApoI	RAATTY	2 cut(s)	328, 482
AspA2I	CCTAGG	1 cut(s)	419
AspS9I	GGNCC	2 cut(s)	345, 832
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	345, 832
AvrII	CCTAGG	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	295, 640
BccI	CCATC	4 cut(s)	71, 442, 709, 770
BciT130I	CCWGG	1 cut(s)	49
BciVI	GTATCC	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	447
BfaI	CTAG	2 cut(s)	117, 420
BfuI	GTATCC	1 cut(s)	584
BisI	GCNGC	4 cut(s)	291, 309, 511, 654
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	4 cut(s)	292, 310, 512, 655
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	2 cut(s)	345, 832
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	345, 832
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	3 cut(s)	34, 228, 405
BpmI	CTGGAG	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	134, 348, 410, 419
BsaWI	WCCGGW	1 cut(s)	791
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	4 cut(s)	134, 348, 410, 419
BseGI	GGATG	3 cut(s)	358, 420, 453
BseLI	CCNNNNNNNGG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	295, 640
BshFI	GGCC	2 cut(s)	424, 510
BshNI	GGYRCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	3 cut(s)	6, 184, 617
BslI	CCNNNNNNNGG	1 cut(s)	601
BsmAI	GTCTC	1 cut(s)	447
BsmFI	GGGAC	3 cut(s)	6, 184, 617
BsnI	GGCC	2 cut(s)	424, 510
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	130, 199
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	4 cut(s)	24, 290, 511, 698
BspANI	GGCC	2 cut(s)	424, 510
BspCNI	CTCAG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	125, 207
BspT107I	GGYRCC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	4 cut(s)	134, 348, 410, 419
BssMI	GATC	2 cut(s)	130, 199
BssT1I	CCWWGG	4 cut(s)	134, 348, 410, 419
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	361, 542, 836
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	5 cut(s)	216, 283, 306, 437, 508
BstDEI	CTNAG	1 cut(s)	431
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	3 cut(s)	358, 420, 453
BstKTI	GATC	2 cut(s)	133, 202
BstMAI	GTCTC	1 cut(s)	447
BstMBI	GATC	2 cut(s)	130, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 415, 725
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	4 cut(s)	264, 439, 443, 465
BstSCI	CCNGG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	295, 640
BsuI	GTATCC	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	424, 510
BtgI	CCRYGG	1 cut(s)	410
BtgZI	GCGATG	1 cut(s)	173
BtrI	CACGTC	1 cut(s)	629
BtsCI	GGATG	3 cut(s)	358, 420, 453
BtsIMutI	CAGTG	3 cut(s)	366, 547, 555
Cac8I	GCNNGC	5 cut(s)	216, 283, 306, 437, 508
Cfr13I	GGNCC	2 cut(s)	345, 832
Csp6I	GTAC	2 cut(s)	227, 256
CviAII	CATG	8 cut(s)	261, 287, 411, 436, 440, 462, 496, 643
CviQI	GTAC	2 cut(s)	227, 256
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	2 cut(s)	132, 201
DpnII	GATC	2 cut(s)	130, 199
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	4 cut(s)	134, 348, 410, 419
Eco47I	GGWCC	2 cut(s)	345, 832
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	4 cut(s)	134, 348, 410, 419
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	4 cut(s)	134, 348, 410, 419
FaeI	CATG	8 cut(s)	264, 290, 414, 439, 443, 465, 499, 646
FaqI	GGGAC	3 cut(s)	6, 184, 617
FatI	CATG	8 cut(s)	260, 286, 410, 435, 439, 461, 495, 642
FauI	CCCGC	2 cut(s)	31, 705
Fnu4HI	GCNGC	4 cut(s)	291, 309, 511, 654
FokI	GGATG	3 cut(s)	365, 427, 460
Fsp4HI	GCNGC	4 cut(s)	291, 309, 511, 654
FspBI	CTAG	2 cut(s)	117, 420
GluI	GCNGC	4 cut(s)	291, 309, 511, 654
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	424, 510
HapII	CCGG	1 cut(s)	792
Hin1II	CATG	8 cut(s)	264, 290, 414, 439, 443, 465, 499, 646
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HinfI	GANTC	2 cut(s)	139, 499
HpaII	CCGG	1 cut(s)	792
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	258, 826
Hpy188I	TCNGA	2 cut(s)	326, 376
Hpy188III	TCNNGA	2 cut(s)	488, 712
Hpy8I	GTNNAC	2 cut(s)	258, 826
HpyAV	CCTTC	2 cut(s)	198, 466
HpyCH4III	ACNGT	3 cut(s)	361, 542, 836
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	4 cut(s)	11, 148, 439, 565
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 415, 725
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	8 cut(s)	264, 290, 414, 439, 443, 465, 499, 646
Kzo9I	GATC	2 cut(s)	130, 199
LmnI	GCTCC	2 cut(s)	31, 743
Lsp1109I	GCAGC	2 cut(s)	295, 640
LweI	GCATC	3 cut(s)	34, 228, 405
MaeI	CTAG	2 cut(s)	117, 420
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	3 cut(s)	263, 355, 622
MalI	GATC	2 cut(s)	132, 201
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	2 cut(s)	130, 199
MboII	GAAGA	2 cut(s)	53, 395
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	4 cut(s)	79, 328, 482, 706
MlyI	GAGTC	2 cut(s)	148, 508
MnlI	CCTC	3 cut(s)	328, 606, 788
Mph1103I	ATGCAT	1 cut(s)	441
MslI	CAYNNNNRTG	3 cut(s)	560, 620, 647
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	287, 415, 725
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	2 cut(s)	130, 199
NlaIII	CATG	8 cut(s)	264, 290, 414, 439, 443, 465, 499, 646
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	263, 622
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	4 cut(s)	264, 439, 443, 465
OliI	CACNNNNGTG	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	439
PciI	ACATGT	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	292, 310, 512, 655
PleI	GAGTC	2 cut(s)	147, 507
PpsI	GAGTC	2 cut(s)	147, 507
PscI	ACATGT	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	345, 832
RsaI	GTAC	2 cut(s)	228, 257
RsaNI	GTAC	2 cut(s)	227, 256
RseI	CAYNNNNRTG	3 cut(s)	560, 620, 647
SatI	GCNGC	4 cut(s)	291, 309, 511, 654
Sau3AI	GATC	2 cut(s)	130, 199
Sau96I	GGNCC	2 cut(s)	345, 832
SchI	GAGTC	2 cut(s)	148, 508
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	9 cut(s)	18, 118, 209, 310, 374, 477, 537, 631, 730
SfaNI	GCATC	3 cut(s)	34, 228, 405
SinI	GGWCC	2 cut(s)	345, 832
SmiMI	CAYNNNNRTG	3 cut(s)	560, 620, 647
SphI	GCATGC	1 cut(s)	439
Sse9I	AATT	4 cut(s)	79, 328, 482, 706
SsiI	CCGC	4 cut(s)	24, 290, 511, 698
SspMI	CTAG	2 cut(s)	117, 420
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	4 cut(s)	134, 348, 410, 419
TaaI	ACNGT	3 cut(s)	361, 542, 836
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	2 cut(s)	202, 333
TasI	AATT	4 cut(s)	79, 328, 482, 706
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	2 cut(s)	293, 513
TscAI	CASTG	3 cut(s)	366, 547, 562
TseFI	GTSAC	2 cut(s)	263, 622
TseI	GCWGC	2 cut(s)	308, 653
Tsp45I	GTSAC	2 cut(s)	263, 622
TspDTI	ATGAA	4 cut(s)	381, 485, 675, 727
TspRI	CASTG	3 cut(s)	366, 547, 562
VpaK11BI	GGWCC	2 cut(s)	345, 832
XapI	RAATTY	2 cut(s)	328, 482
XceI	RCATGY	4 cut(s)	264, 439, 443, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XmaJI	CCTAGG	1 cut(s)	419
XspI	CTAG	2 cut(s)	117, 420
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.