Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003432

Physical Location & Seq

Genomic Coordinates Forward (+)

994966 .. 999233

Gene Structure 4268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01760.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCATCAGCATCCCTTAAACTGCAGGGATCATAGTGTAAAGTTTCTTGTAGCTGACTGGGAGAGATTACCTGGATTTGGTATTGGAGCCCAGATTGCTGGAATGTGTGGGCTTCTTGCTATTGCAATGAAGGAAAAAAGGGTCCTTGTTACCAACTACTATAATCGAGCTGATCATGACGGTTGCAAAGGTTCATCCCGCTCCAGTTGGTCCTGCTACTTTTTCCCAGAAACATCCCTAGAATGTCGAAATCGTGCATTGGAGCTTATGGAAAATGAAGATGCCTGGAGAAATGGCAGCATCAAGGCAAAAGAAAATTATACTTCAAAGCAAATATGGGCTGGACGAACACCTAGAATATGGGGTGAACCTTGGAGTTATTTGCGACCAACAACAGTAATAAATGGGACTCTGATTGCTTATCATCGCAAAATGGATCGAAGGTGGTGGCGAGCACAGGCAGTACGATACTTGATGCGATTTCAAACCGAGTACACATGTCACTTACTGAATGTTGCTCGCCATGCGGCATTTGGAAAGCAAGCTGCGAATATGGTAGTCAAAAGTTTCGAGGGGGAATGGTCTAAGGATGTTACAGTGAATGAAAGGTCTGATATTGAAGAGTTTGTTTGGTCTAATCACAAGCCATGGATGCCTCGGCCACTACTGAGCATGCATGTAAGAATGGGAGACAAAGCATGTGAAATGAAGGTTGTTGAATTTGAAGATTACATGAGTCTTGCTGATCGCATCCGAAAGCGATTTCCACAGCTCAATAGTGTTTGGCTATCCACTGAAATGCAGGAAGTGATCGATAAATCTAGAGAGTACCCTCATTGGAACTTCTACTACACAAATGTGACACGTCAGGTTGGAAACATGACAATGGCTACTTATGAAACAAGTCTCGGTAGAGAAACTAGCACAAACTACCCGCTTGTCAATTTCTTGATGGCAACCGAGGCTGACTTTTTCATTGGAGCATTGGGTTCAACTTGGTGCTTCCTTATAGATGGAATGAGAAATACTGGAGGGAAAGTTATGGCTGGATACTTGAGTGTCAACAAGGACCGGTTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

42.07

Weight (kDa)

9.0

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G28910 AT5G28910 AT5G28960
fragaria_vesca	FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760
malus_domestica	MD04G1231000.v1.1 MD12G1249300.v1.1
prunus_persica	Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1
pyrus_communis	pycom04g20460
rosa_chinensis	RchiOBHm_Chr3g0449501
rosa_laevigata	RLG00000025821
rosa_multiflora	Rmu_co8438485.1_g000001 Rmu_sc0000430.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427460
rosa_rugosa	Rorug02G0621800 Rorug02G0621900 Rorug02G0622000 Rorug02G0622000
rosa_samantha	Rh3AG019900 Rh3BG019900 Rh3CG018600 Rh3DG019900
rosa_wichuraiana	Rw3G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AciI	CCGC	3 cut(s)	199, 527, 935
AclWI	GGATC	2 cut(s)	36, 444
AcoI	YGGCCR	1 cut(s)	659
AcsI	RAATTY	1 cut(s)	719
AfaI	GTAC	3 cut(s)	465, 494, 830
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflIII	ACRYGT	2 cut(s)	497, 863
AgeI	ACCGGT	1 cut(s)	1071
AgsI	TTSAA	6 cut(s)	327, 485, 620, 719, 725, 993
AjiI	CACGTC	1 cut(s)	866
AjnI	CCWGG	2 cut(s)	70, 284
AleI	CACNNNNGTG	1 cut(s)	857
AluBI	AGCT	5 cut(s)	53, 170, 265, 545, 772
AluI	AGCT	5 cut(s)	53, 170, 265, 545, 772
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	684, 911
AlwI	GGATC	2 cut(s)	36, 444
AoxI	GGCC	1 cut(s)	659
ApeKI	GCWGC	2 cut(s)	297, 545
ApoI	RAATTY	1 cut(s)	719
AsiGI	ACCGGT	1 cut(s)	1071
AspS9I	GGNCC	3 cut(s)	142, 210, 1069
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	3 cut(s)	142, 210, 1069
BaeI	ACNNNNGTAYC	2 cut(s)	1042, 1075
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	309, 532
BccI	CCATC	2 cut(s)	946, 1007
BciT130I	CCWGG	2 cut(s)	72, 286
BciVI	GTATCC	1 cut(s)	1043
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	684, 911
BfaI	CTAG	4 cut(s)	239, 354, 822, 921
BfmI	CTRYAG	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	1043
BisI	GCNGC	3 cut(s)	298, 528, 546
BlsI	GCNGC	3 cut(s)	299, 529, 547
Bme1390I	CCNGG	2 cut(s)	72, 286
Bme18I	GGWCC	3 cut(s)	142, 210, 1069
BmgBI	CACGTC	1 cut(s)	866
BmgT120I	GGNCC	3 cut(s)	142, 210, 1069
BmiI	GGNNCC	2 cut(s)	88, 143
BmrFI	CCNGG	2 cut(s)	72, 286
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	7 cut(s)	13, 19, 271, 309, 465, 642, 759
BmuI	ACTGGG	1 cut(s)	67
BpmI	CTGGAG	3 cut(s)	187, 307, 1050
BpuEI	CTTGAG	1 cut(s)	1075
Bsa29I	ATCGAT	1 cut(s)	813
BsaJI	CCNNGG	4 cut(s)	371, 647, 656, 960
BsaWI	WCCGGW	1 cut(s)	1071
BsaXI	ACNNNNNCTCC	2 cut(s)	1023, 1053
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	1071
Bse1I	ACTGG	3 cut(s)	62, 204, 1033
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	72, 286
BseCI	ATCGAT	1 cut(s)	813
BseDI	CCNNGG	4 cut(s)	371, 647, 656, 960
BseGI	GGATG	6 cut(s)	10, 194, 233, 595, 657, 750
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	3 cut(s)	62, 204, 1033
BseXI	GCAGC	2 cut(s)	309, 532
BshFI	GGCC	1 cut(s)	661
BshTI	ACCGGT	1 cut(s)	1071
BshVI	ATCGAT	1 cut(s)	813
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	1072
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	684, 911
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	1 cut(s)	661
Bsp1286I	GDGCHC	2 cut(s)	91, 457
Bsp143I	GATC	5 cut(s)	28, 172, 436, 745, 810
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	3 cut(s)	199, 527, 935
BspANI	GGCC	1 cut(s)	661
BspCNI	CTCAG	1 cut(s)	660
BspDI	ATCGAT	1 cut(s)	813
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	88, 143
BspMAI	CTGCAG	1 cut(s)	26
BspPI	GGATC	2 cut(s)	36, 444
BsrBI	CCGCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	1071
BsrI	ACTGG	3 cut(s)	62, 204, 1033
BssAI	RCCGGY	1 cut(s)	1071
BssECI	CCNNGG	4 cut(s)	371, 647, 656, 960
BssMI	GATC	5 cut(s)	28, 172, 436, 745, 810
BssT1I	CCWWGG	2 cut(s)	371, 647
Bst2UI	CCWGG	2 cut(s)	72, 286
Bst4CI	ACNGT	3 cut(s)	182, 397, 598
Bst6I	CTCTTC	1 cut(s)	615
BstC8I	GCNNGC	4 cut(s)	453, 520, 543, 674
BstDEI	CTNAG	2 cut(s)	585, 668
BstDSI	CCRYGG	1 cut(s)	647
BstF5I	GGATG	6 cut(s)	10, 194, 233, 595, 657, 750
BstKTI	GATC	5 cut(s)	31, 175, 439, 748, 813
BstMAI	GTCTC	2 cut(s)	684, 911
BstMBI	GATC	5 cut(s)	28, 172, 436, 745, 810
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 524, 652, 962
BstNI	CCWGG	2 cut(s)	72, 286
BstNSI	RCATGY	4 cut(s)	501, 676, 680, 702
BstSCI	CCNGG	2 cut(s)	70, 284
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	309, 532
BstXI	CCANNNNNNTGG	1 cut(s)	98
Bsu15I	ATCGAT	1 cut(s)	813
BsuI	GTATCC	1 cut(s)	1043
BsuRI	GGCC	1 cut(s)	661
BsuTUI	ATCGAT	1 cut(s)	813
BtgI	CCRYGG	1 cut(s)	647
BtgZI	GCGATG	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	866
BtsCI	GGATG	6 cut(s)	10, 194, 233, 595, 657, 750
BtsIMutI	CAGTG	2 cut(s)	603, 792
Cac8I	GCNNGC	4 cut(s)	453, 520, 543, 674
CciI	TCATGA	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	1071
Cfr13I	GGNCC	3 cut(s)	142, 210, 1069
ClaI	ATCGAT	1 cut(s)	813
Csp6I	GTAC	3 cut(s)	464, 493, 829
CspAI	ACCGGT	1 cut(s)	1071
CviAII	CATG	9 cut(s)	176, 498, 524, 648, 673, 677, 699, 733, 880
CviQI	GTAC	3 cut(s)	464, 493, 829
DdeI	CTNAG	2 cut(s)	585, 668
DpnI	GATC	5 cut(s)	30, 174, 438, 747, 812
DpnII	GATC	5 cut(s)	28, 172, 436, 745, 810
EaeI	YGGCCR	1 cut(s)	659
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco130I	CCWWGG	2 cut(s)	371, 647
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	142, 210, 1069
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	70, 284
EcoT14I	CCWWGG	2 cut(s)	371, 647
EcoT22I	ATGCAT	2 cut(s)	6, 678
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	371, 647
FaeI	CATG	9 cut(s)	179, 501, 527, 651, 676, 680, 702, 736, 883
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	9 cut(s)	175, 497, 523, 647, 672, 676, 698, 732, 879
FauI	CCCGC	2 cut(s)	206, 942
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	298, 528, 546
FokI	GGATG	5 cut(s)	181, 220, 602, 664, 737
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	3 cut(s)	298, 528, 546
FspBI	CTAG	4 cut(s)	239, 354, 822, 921
GluI	GCNGC	3 cut(s)	298, 528, 546
GsuI	CTGGAG	3 cut(s)	187, 307, 1050
HaeIII	GGCC	1 cut(s)	661
HapII	CCGG	1 cut(s)	1072
Hin1II	CATG	9 cut(s)	179, 501, 527, 651, 676, 680, 702, 736, 883
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HinfI	GANTC	2 cut(s)	409, 736
HpaII	CCGG	1 cut(s)	1072
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	3 cut(s)	368, 495, 1063
Hpy188I	TCNGA	3 cut(s)	414, 613, 755
Hpy188III	TCNNGA	3 cut(s)	176, 822, 949
Hpy8I	GTNNAC	3 cut(s)	368, 495, 1063
HpyAV	CCTTC	3 cut(s)	124, 435, 703
HpyCH4III	ACNGT	3 cut(s)	182, 397, 598
HpyCH4IV	ACGT	1 cut(s)	865
HpyCH4V	TGCA	7 cut(s)	4, 24, 125, 186, 257, 676, 802
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 524, 652, 962
HpyF3I	CTNAG	2 cut(s)	585, 668
HpySE526I	ACGT	1 cut(s)	865
Hsp92II	CATG	9 cut(s)	179, 501, 527, 651, 676, 680, 702, 736, 883
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	28, 172, 436, 745, 810
LmnI	GCTCC	4 cut(s)	86, 206, 262, 980
Lsp1109I	GCAGC	2 cut(s)	309, 532
LweI	GCATC	7 cut(s)	13, 19, 271, 309, 465, 642, 759
MaeI	CTAG	4 cut(s)	239, 354, 822, 921
MaeII	ACGT	1 cut(s)	865
MaeIII	GTNAC	4 cut(s)	148, 500, 592, 859
MalI	GATC	5 cut(s)	30, 174, 438, 747, 812
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	5 cut(s)	28, 172, 436, 745, 810
MboII	GAAGA	3 cut(s)	290, 632, 737
MhlI	GDGCHC	2 cut(s)	91, 457
MluCI	AATT	3 cut(s)	316, 719, 943
MlyI	GAGTC	2 cut(s)	403, 745
MmeI	TCCRAC	1 cut(s)	853
MnlI	CCTC	5 cut(s)	565, 666, 843, 955, 1025
Mph1103I	ATGCAT	2 cut(s)	6, 678
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	3 cut(s)	797, 857, 884
MspI	CCGG	1 cut(s)	1072
MspR9I	CCNGG	2 cut(s)	72, 286
MvaI	CCWGG	2 cut(s)	72, 286
MwoI	GCNNNNNNNGC	4 cut(s)	95, 524, 652, 962
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	5 cut(s)	28, 172, 436, 745, 810
NlaIII	CATG	9 cut(s)	179, 501, 527, 651, 676, 680, 702, 736, 883
NlaIV	GGNNCC	2 cut(s)	88, 143
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	2 cut(s)	500, 859
NsiI	ATGCAT	2 cut(s)	6, 678
NspI	RCATGY	4 cut(s)	501, 676, 680, 702
OliI	CACNNNNGTG	1 cut(s)	857
PaeI	GCATGC	1 cut(s)	676
PagI	TCATGA	1 cut(s)	175
PciI	ACATGT	1 cut(s)	497
PinAI	ACCGGT	1 cut(s)	1071
PkrI	GCNGC	3 cut(s)	299, 529, 547
PleI	GAGTC	2 cut(s)	403, 744
PpsI	GAGTC	2 cut(s)	403, 744
PpuMI	RGGWCCY	1 cut(s)	142
PscI	ACATGT	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	70, 284
PspGI	CCWGG	2 cut(s)	70, 284
PspN4I	GGNNCC	2 cut(s)	88, 143
PspPI	GGNCC	3 cut(s)	142, 210, 1069
PspPPI	RGGWCCY	1 cut(s)	142
PsrI	GAACNNNNNNTAC	2 cut(s)	833, 865
PstI	CTGCAG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	465, 494, 830
RsaNI	GTAC	3 cut(s)	464, 493, 829
RseI	CAYNNNNRTG	3 cut(s)	797, 857, 884
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	3 cut(s)	298, 528, 546
Sau3AI	GATC	5 cut(s)	28, 172, 436, 745, 810
Sau96I	GGNCC	3 cut(s)	142, 210, 1069
SchI	GAGTC	2 cut(s)	403, 745
ScrFI	CCNGG	2 cut(s)	72, 286
SduI	GDGCHC	2 cut(s)	91, 457
SfaNI	GCATC	7 cut(s)	13, 19, 271, 309, 465, 642, 759
SfcI	CTRYAG	1 cut(s)	22
SinI	GGWCC	3 cut(s)	142, 210, 1069
SmiMI	CAYNNNNRTG	3 cut(s)	797, 857, 884
SmlI	CTYRAG	1 cut(s)	1054
SmoI	CTYRAG	1 cut(s)	1054
SphI	GCATGC	1 cut(s)	676
Sse9I	AATT	3 cut(s)	316, 719, 943
SsiI	CCGC	3 cut(s)	199, 527, 935
SspMI	CTAG	4 cut(s)	239, 354, 822, 921
StyD4I	CCNGG	2 cut(s)	70, 284
StyI	CCWWGG	2 cut(s)	371, 647
TaaI	ACNGT	3 cut(s)	182, 397, 598
TaiI	ACGT	1 cut(s)	868
TaqI	TCGA	5 cut(s)	166, 247, 439, 570, 813
TasI	AATT	3 cut(s)	316, 719, 943
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	530
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	2 cut(s)	603, 799
TseFI	GTSAC	2 cut(s)	500, 859
TseI	GCWGC	2 cut(s)	297, 545
Tsp45I	GTSAC	2 cut(s)	500, 859
TspDTI	ATGAA	7 cut(s)	143, 183, 291, 618, 722, 912, 964
TspRI	CASTG	2 cut(s)	603, 799
VpaK11BI	GGWCC	3 cut(s)	142, 210, 1069
XapI	RAATTY	1 cut(s)	719
XbaI	TCTAGA	1 cut(s)	821
XceI	RCATGY	4 cut(s)	501, 676, 680, 702
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XspI	CTAG	4 cut(s)	239, 354, 822, 921
Zsp2I	ATGCAT	2 cut(s)	6, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.