Rmu_sc0000430.1_g000017

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000430.1
Physical Location & Seq
Reverse (-)
66357 .. 69223
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000430.1_g000017.1.cds

Sequence Viewer

Length: 1584 bp
atggctgctctcacttcatttggtacttttgagtttggtgggttttcgttttcgaccatagctgagggtgcttcagctgggcactcaagctcagagttcatcaactgcagttctgaaccaatgataacacagagagtggtagtcgattcgcttggaagtgaagaaaccatcaatagtgagagagcctcattattgtattcagcttggagtgctttactaactgaatcagattccggaaaaagtgattacttgcagagaaatggactaaacagatccagtgtgccaaacacccctcatttggaaaactgcaagttgaaaggacaagtacacaagcgccttgataaacatcccgagaatgagagccatccaacagctgcaacaaatgagcagtcgagctattttaggaatcaagctatgtctgaaactgcttatgctccttggattacagggtctgacgaagaaaattacccgtcaacacgaaaagtgcaacgagacatatggctgcatcagcatcctttgaactgcagggatcctagtgtaaagtttcttgtagctgactgggaaagattacctggattgggtattggagcccagattgctggaatgtgtggagttcttgctattgcaatgaaggaaaaaagggtccttgttaccaactactttaatcgagctgaccatgatggttgcaaaggttcgtcccgctccagttggtcctgttattttttcccagaaacatctctagaatgtcgaaatcgtgcattggagcttatagaaagtgaagatgcctggaaaagtggcaccatcaaggcaaaagataattatacttcaaaggaaatatgggctggacgaacacctagaatatggggtgatccttggagtcatttgcaaccaacaacagaaataaatgggactttgattgcttatcatcgcaaaatggatcgaaggtggtggcgagcacaggcagtacgatacttgatgcgatttcaaaccgagtacacatgtgacttgctgaatgttgctcgccatgcggcatttggaaagcaagctgccgatatggtagtcagaaatttcgagggggaatggtccaaggatgttacagtgaatgaaaggtcagatattgaagagtttgtttggtctaatcacaagccatggatgcctaggccactactgagcatgcatgtaaggatgggagacaaagcatgtgaaatgaaggtagttgaatttcaagaatacatgagtcttgctggccgcattagaaagcgatttccacagctcaacagtgtttggctttccactgaaatgcaggaagtgattgataaatctaaaggataccctcattgggacttctactacacaaatgtgacacgtcaagtgggaaacatgacaatggctgcttatgaaacaagtcttggtagaaaaaccagcacgaactacccgcttgtcaatttcttgatggcaaccgaagctgactttttcattggagcgttgggttctacttggtgcttccttatagatggaatgagaaacaccggagggaaagttatggctggatatttgagtgtcaacaaggaccgtttctggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

527

Amino Acids

60.09

Weight (kDa)

7.21

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 797
AccBSI CCGCTC 1 cut(s) 702
AccIII TCCGGA 1 cut(s) 233
AciI CCGC 4 cut(s) 700, 1028, 1249, 1436
AclWI GGATC 5 cut(s) 267, 524, 537, 863, 945
AcoI YGGCCR 1 cut(s) 1246
AcsI RAATTY 2 cut(s) 1066, 1220
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 4 cut(s) 25, 327, 966, 995
AfiI CCNNNNNNNGG 3 cut(s) 298, 578, 1339
AflIII ACRYGT 2 cut(s) 998, 1364
AgsI TTSAA 7 cut(s) 316, 520, 828, 986, 1121, 1220, 1226
AjiI CACGTC 1 cut(s) 1367
AjnI CCWGG 2 cut(s) 571, 785
AjuI GAANNNNNNNTTGG 2 cut(s) 1392, 1424
AleI CACNNNNGTG 1 cut(s) 1358
Alw21I GWGCWC 1 cut(s) 958
Alw26I GTCTC 2 cut(s) 486, 1185
AlwI GGATC 5 cut(s) 267, 524, 537, 863, 945
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 350
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 2 cut(s) 1160, 1246
ApeKI GCWGC 5 cut(s) 5, 374, 502, 1046, 1391
ApoI RAATTY 2 cut(s) 1066, 1220
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
AspA2I CCTAGG 1 cut(s) 1157
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 4 cut(s) 643, 711, 1083, 1570
AsuHPI GGTGA 1 cut(s) 878
AvaI CYCGRG 1 cut(s) 350
AvaII GGWCC 4 cut(s) 643, 711, 1083, 1570
AvrII CCTAGG 1 cut(s) 1157
BaeGI GKGCMC 1 cut(s) 84
BamHI GGATCC 1 cut(s) 529
BanI GGYRCC 1 cut(s) 797
BanII GRGCYC 1 cut(s) 592
Bbv12I GWGCWC 1 cut(s) 958
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 4 cut(s) 361, 489, 1033, 1378
BccI CCATC 7 cut(s) 176, 372, 674, 809, 1180, 1447, 1508
BciT130I CCWGG 2 cut(s) 573, 787
BciVI GTATCC 1 cut(s) 1322
BcoDI GTCTC 2 cut(s) 486, 1185
BfaI CTAG 4 cut(s) 534, 740, 855, 1158
BfmI CTRYAG 2 cut(s) 106, 523
BfoI RGCGCY 1 cut(s) 337
BfuI GTATCC 1 cut(s) 1322
BisI GCNGC 7 cut(s) 6, 375, 503, 1029, 1047, 1249, 1392
BlnI CCTAGG 1 cut(s) 1157
BlsI GCNGC 7 cut(s) 7, 376, 504, 1030, 1048, 1250, 1393
Bme1390I CCNGG 2 cut(s) 573, 787
Bme18I GGWCC 4 cut(s) 643, 711, 1083, 1570
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 1367
BmgT120I GGNCC 4 cut(s) 643, 711, 1083, 1570
BmiI GGNNCC 4 cut(s) 531, 589, 644, 799
BmrFI CCNGG 2 cut(s) 573, 787
BmrI ACTGGG 1 cut(s) 568
BmsI GCATC 5 cut(s) 514, 520, 772, 966, 1143
BmuI ACTGGG 1 cut(s) 568
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 1 cut(s) 688
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 70
BsaBI GATNNNNATC 1 cut(s) 345
BsaJI CCNNGG 5 cut(s) 437, 872, 1086, 1148, 1157
BsaWI WCCGGW 2 cut(s) 233, 1529
BsaXI ACNNNNNCTCC 2 cut(s) 1524, 1554
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 578, 1339
Bse1I ACTGG 3 cut(s) 276, 563, 705
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 345
BseAI TCCGGA 1 cut(s) 233
BseBI CCWGG 2 cut(s) 573, 787
BseDI CCNNGG 5 cut(s) 437, 872, 1086, 1148, 1157
BseGI GGATG 6 cut(s) 346, 364, 511, 1096, 1158, 1191
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 3 cut(s) 298, 578, 1339
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 3 cut(s) 54, 105, 1160
BseNI ACTGG 3 cut(s) 276, 563, 705
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 4 cut(s) 361, 489, 1033, 1378
BseYI CCCAGC 1 cut(s) 77
BshFI GGCC 2 cut(s) 1162, 1248
BshNI GGYRCC 1 cut(s) 797
BsiHKAI GWGCWC 1 cut(s) 958
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 2 cut(s) 234, 1530
BslFI GGGAC 3 cut(s) 682, 922, 1355
BslI CCNNNNNNNGG 3 cut(s) 298, 578, 1339
BsmAI GTCTC 2 cut(s) 486, 1185
BsmFI GGGAC 3 cut(s) 682, 922, 1355
BsnI GGCC 2 cut(s) 1162, 1248
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 3 cut(s) 84, 592, 958
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 4 cut(s) 272, 529, 868, 937
Bsp19I CCATGG 1 cut(s) 1148
BspACI CCGC 4 cut(s) 700, 1028, 1249, 1436
BspANI GGCC 2 cut(s) 1162, 1248
BspCNI CTCAG 3 cut(s) 55, 104, 1161
BspEI TCCGGA 1 cut(s) 233
BspLI GGNNCC 4 cut(s) 531, 589, 644, 799
BspMAI CTGCAG 2 cut(s) 110, 527
BspPI GGATC 5 cut(s) 267, 524, 537, 863, 945
BspT107I GGYRCC 1 cut(s) 797
BsrBI CCGCTC 1 cut(s) 702
BsrDI GCAATG 1 cut(s) 633
BsrI ACTGG 3 cut(s) 276, 563, 705
BssECI CCNNGG 5 cut(s) 437, 872, 1086, 1148, 1157
BssMI GATC 4 cut(s) 272, 529, 868, 937
BssT1I CCWWGG 5 cut(s) 437, 872, 1086, 1148, 1157
Bst2UI CCWGG 2 cut(s) 573, 787
Bst4CI ACNGT 3 cut(s) 1099, 1280, 1574
Bst6I CTCTTC 1 cut(s) 1116
BstC8I GCNNGC 5 cut(s) 954, 1021, 1044, 1175, 1246
BstDEI CTNAG 3 cut(s) 63, 91, 1169
BstDSI CCRYGG 1 cut(s) 1148
BstF5I GGATG 6 cut(s) 346, 364, 511, 1096, 1158, 1191
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 4 cut(s) 275, 532, 871, 940
BstMAI GTCTC 2 cut(s) 486, 1185
BstMBI GATC 4 cut(s) 272, 529, 868, 937
BstMWI GCNNNNNNNGC 7 cut(s) 68, 209, 508, 596, 1025, 1153, 1463
BstNI CCWGG 2 cut(s) 573, 787
BstNSI RCATGY 4 cut(s) 1002, 1177, 1181, 1203
BstSCI CCNGG 2 cut(s) 571, 785
BstSFI CTRYAG 2 cut(s) 106, 523
BstSLI GKGCMC 1 cut(s) 84
BstV1I GCAGC 4 cut(s) 361, 489, 1033, 1378
BstX2I RGATCY 2 cut(s) 272, 529
BstXI CCANNNNNNTGG 1 cut(s) 599
BstYI RGATCY 2 cut(s) 272, 529
BsuI GTATCC 1 cut(s) 1322
BsuRI GGCC 2 cut(s) 1162, 1248
BtgI CCRYGG 1 cut(s) 1148
BtgZI GCGATG 1 cut(s) 911
BtrI CACGTC 1 cut(s) 1367
BtsCI GGATG 6 cut(s) 346, 364, 511, 1096, 1158, 1191
BtsIMutI CAGTG 4 cut(s) 283, 1104, 1285, 1293
Cac8I GCNNGC 5 cut(s) 954, 1021, 1044, 1175, 1246
CaiI CAGNNNCTG 1 cut(s) 452
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 4 cut(s) 643, 711, 1083, 1570
Csp6I GTAC 4 cut(s) 24, 326, 965, 994
CviAII CATG 9 cut(s) 677, 999, 1025, 1149, 1174, 1178, 1200, 1234, 1381
CviQI GTAC 4 cut(s) 24, 326, 965, 994
DdeI CTNAG 3 cut(s) 63, 91, 1169
DpnI GATC 4 cut(s) 274, 531, 870, 939
DpnII GATC 4 cut(s) 272, 529, 868, 937
EaeI YGGCCR 1 cut(s) 1246
Eam1104I CTCTTC 1 cut(s) 1116
EarI CTCTTC 1 cut(s) 1116
Eco130I CCWWGG 5 cut(s) 437, 872, 1086, 1148, 1157
Eco24I GRGCYC 1 cut(s) 592
Eco47I GGWCC 4 cut(s) 643, 711, 1083, 1570
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 643
EcoRII CCWGG 2 cut(s) 571, 785
EcoT14I CCWWGG 5 cut(s) 437, 872, 1086, 1148, 1157
EcoT22I ATGCAT 1 cut(s) 1179
EcoT38I GRGCYC 1 cut(s) 592
ErhI CCWWGG 5 cut(s) 437, 872, 1086, 1148, 1157
FaeI CATG 9 cut(s) 680, 1002, 1028, 1152, 1177, 1181, 1203, 1237, 1384
FaqI GGGAC 3 cut(s) 682, 922, 1355
FatI CATG 9 cut(s) 676, 998, 1024, 1148, 1173, 1177, 1199, 1233, 1380
FauI CCCGC 2 cut(s) 707, 1443
FauNDI CATATG 1 cut(s) 497
Fnu4HI GCNGC 7 cut(s) 6, 375, 503, 1029, 1047, 1249, 1392
FokI GGATG 6 cut(s) 333, 351, 498, 1103, 1165, 1198
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 7 cut(s) 6, 375, 503, 1029, 1047, 1249, 1392
FspBI CTAG 4 cut(s) 534, 740, 855, 1158
GlaI GCGC 1 cut(s) 335
GluI GCNGC 7 cut(s) 6, 375, 503, 1029, 1047, 1249, 1392
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 688
HaeII RGCGCY 1 cut(s) 337
HaeIII GGCC 2 cut(s) 1162, 1248
HapII CCGG 2 cut(s) 234, 1530
HhaI GCGC 1 cut(s) 336
Hin1II CATG 9 cut(s) 680, 1002, 1028, 1152, 1177, 1181, 1203, 1237, 1384
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 2 cut(s) 474, 1564
HindII GTYRAC 2 cut(s) 474, 1564
HinfI GANTC 6 cut(s) 146, 224, 230, 406, 877, 1237
HpaII CCGG 2 cut(s) 234, 1530
HphI GGTGA 1 cut(s) 878
Hpy166II GTNNAC 4 cut(s) 328, 474, 996, 1564
Hpy188I TCNGA 7 cut(s) 94, 115, 229, 421, 454, 1064, 1114
Hpy188III TCNNGA 5 cut(s) 234, 350, 740, 1226, 1450
Hpy8I GTNNAC 4 cut(s) 328, 474, 996, 1564
HpyAV CCTTC 3 cut(s) 625, 936, 1204
HpyCH4III ACNGT 3 cut(s) 1099, 1280, 1574
HpyCH4IV ACGT 1 cut(s) 1366
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 209, 508, 596, 1025, 1153, 1463
HpyF3I CTNAG 3 cut(s) 63, 91, 1169
HpySE526I ACGT 1 cut(s) 1366
Hsp92II CATG 9 cut(s) 680, 1002, 1028, 1152, 1177, 1181, 1203, 1237, 1384
HspAI GCGC 1 cut(s) 334
Kpn2I TCCGGA 1 cut(s) 233
Kzo9I GATC 4 cut(s) 272, 529, 868, 937
LmnI GCTCC 5 cut(s) 439, 587, 707, 763, 1481
Lsp1109I GCAGC 4 cut(s) 361, 489, 1033, 1378
LweI GCATC 5 cut(s) 514, 520, 772, 966, 1143
MaeI CTAG 4 cut(s) 534, 740, 855, 1158
MaeII ACGT 1 cut(s) 1366
MaeIII GTNAC 4 cut(s) 649, 1001, 1093, 1360
MalI GATC 4 cut(s) 274, 531, 870, 939
MbiI CCGCTC 1 cut(s) 702
MboI GATC 4 cut(s) 272, 529, 868, 937
MboII GAAGA 4 cut(s) 173, 470, 791, 1133
MflI RGATCY 2 cut(s) 272, 529
MhlI GDGCHC 3 cut(s) 84, 592, 958
MluCI AATT 5 cut(s) 463, 817, 1066, 1220, 1444
MlyI GAGTC 2 cut(s) 886, 1246
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 6 cut(s) 58, 196, 303, 1066, 1344, 1526
Mph1103I ATGCAT 1 cut(s) 1179
MroI TCCGGA 1 cut(s) 233
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 3 cut(s) 1298, 1358, 1385
MspA1I CMGCKG 2 cut(s) 77, 374
MspI CCGG 2 cut(s) 234, 1530
MspR9I CCNGG 2 cut(s) 573, 787
MvaI CCWGG 2 cut(s) 573, 787
MwoI GCNNNNNNNGC 7 cut(s) 68, 209, 508, 596, 1025, 1153, 1463
NcoI CCATGG 1 cut(s) 1148
NdeI CATATG 1 cut(s) 497
NdeII GATC 4 cut(s) 272, 529, 868, 937
NlaIII CATG 9 cut(s) 680, 1002, 1028, 1152, 1177, 1181, 1203, 1237, 1384
NlaIV GGNNCC 4 cut(s) 531, 589, 644, 799
NmuCI GTSAC 2 cut(s) 1001, 1360
NsiI ATGCAT 1 cut(s) 1179
NspI RCATGY 4 cut(s) 1002, 1177, 1181, 1203
OliI CACNNNNGTG 1 cut(s) 1358
PaeI GCATGC 1 cut(s) 1177
PciI ACATGT 1 cut(s) 998
PfeI GAWTC 4 cut(s) 146, 224, 230, 406
PkrI GCNGC 7 cut(s) 7, 376, 504, 1030, 1048, 1250, 1393
PleI GAGTC 2 cut(s) 885, 1245
PpsI GAGTC 2 cut(s) 885, 1245
PpuMI RGGWCCY 1 cut(s) 643
PscI ACATGT 1 cut(s) 998
Psp5II RGGWCCY 1 cut(s) 643
Psp6I CCWGG 2 cut(s) 571, 785
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 2 cut(s) 571, 785
PspN4I GGNNCC 4 cut(s) 531, 589, 644, 799
PspPI GGNCC 4 cut(s) 643, 711, 1083, 1570
PspPPI RGGWCCY 1 cut(s) 643
PstI CTGCAG 2 cut(s) 110, 527
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 2 cut(s) 272, 529
PvuII CAGCTG 2 cut(s) 77, 374
RsaI GTAC 4 cut(s) 25, 327, 966, 995
RsaNI GTAC 4 cut(s) 24, 326, 965, 994
RseI CAYNNNNRTG 3 cut(s) 1298, 1358, 1385
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 7 cut(s) 6, 375, 503, 1029, 1047, 1249, 1392
Sau3AI GATC 4 cut(s) 272, 529, 868, 937
Sau96I GGNCC 4 cut(s) 643, 711, 1083, 1570
SchI GAGTC 2 cut(s) 886, 1246
ScrFI CCNGG 2 cut(s) 573, 787
SduI GDGCHC 3 cut(s) 84, 592, 958
SfaNI GCATC 5 cut(s) 514, 520, 772, 966, 1143
SfcI CTRYAG 2 cut(s) 106, 523
SinI GGWCC 4 cut(s) 643, 711, 1083, 1570
SmiMI CAYNNNNRTG 3 cut(s) 1298, 1358, 1385
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SphI GCATGC 1 cut(s) 1177
Sse9I AATT 5 cut(s) 463, 817, 1066, 1220, 1444
SsiI CCGC 4 cut(s) 700, 1028, 1249, 1436
SspMI CTAG 4 cut(s) 534, 740, 855, 1158
StyD4I CCNGG 2 cut(s) 571, 785
StyI CCWWGG 5 cut(s) 437, 872, 1086, 1148, 1157
TaaI ACNGT 3 cut(s) 1099, 1280, 1574
TaiI ACGT 1 cut(s) 1369
TaqI TCGA 7 cut(s) 53, 144, 392, 667, 748, 940, 1071
TasI AATT 5 cut(s) 463, 817, 1066, 1220, 1444
TatI WGTACW 2 cut(s) 325, 993
TauI GCSGC 2 cut(s) 1031, 1251
TfiI GAWTC 4 cut(s) 146, 224, 230, 406
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 4 cut(s) 283, 1104, 1285, 1300
TseFI GTSAC 2 cut(s) 1001, 1360
TseI GCWGC 5 cut(s) 5, 374, 502, 1046, 1391
Tsp45I GTSAC 2 cut(s) 1001, 1360
TspDTI ATGAA 7 cut(s) 6, 88, 644, 1119, 1223, 1413, 1465
TspRI CASTG 4 cut(s) 283, 1104, 1285, 1300
VpaK11BI GGWCC 4 cut(s) 643, 711, 1083, 1570
XapI RAATTY 2 cut(s) 1066, 1220
XbaI TCTAGA 1 cut(s) 739
XceI RCATGY 4 cut(s) 1002, 1177, 1181, 1203
XcmI CCANNNNNNNNNTGG 1 cut(s) 1031
XmaJI CCTAGG 1 cut(s) 1157
XspI CTAG 4 cut(s) 534, 740, 855, 1158
Zsp2I ATGCAT 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.