Rorug02G0621800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003432
Physical Location & Seq
Reverse (-)
73859190 .. 73859648
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0621800.1

Sequence Viewer

Length: 459 bp
ATGTCTTTATCAGTAGCTCTCCTTACAGGCTTGTACTGCAAGTGTGGAAAAACTGAGGACGGGCGCGTGGCGTTTGACTTTATTTCTGAGAAGAATGTGGTTTCGTGGAATTCTATGGTTGGCGGGTATTGTGTGAATGGACAAATGGAAGAAGCTGGAGTGTTATTTGATAGGATAAATGTGCCAAACAATGTATCTTGGTATACCATCGTCGGAGGTTACTTGGAAAACAAGGCATTAGATAAGGTAATTGAAGTGTTTAATGAGATGCTTTTGTGTGGAGAAACCCCAAACACATCCACCTTCTCGAGTACTGTGCTTTCTGGATGTGCAAGCATAGCGTCGTTAGAGATTAATTTGCTGTTGTTCGAGGAAATGAGAAGGAACTTCAACTCCAGCTTGCTCCTAATGAGCTCATGCTCTTATCAGTTCTTTTTGCTTCTGCTCACACTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.77

Weight (kDa)

4.54

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 31 - 57 4.5e-06 PPR repeat family
PPR PF01535 34 - 58 9e-07 PPR repeat
PPR_2 PF13041 62 - 110 3.7e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 203
AccII CGCG 1 cut(s) 66
AciI CCGC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 109
AfaI GTAC 2 cut(s) 35, 313
AgsI TTSAA 2 cut(s) 254, 391
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 4 cut(s) 17, 155, 399, 414
AluI AGCT 4 cut(s) 17, 155, 399, 414
Alw21I GWGCWC 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 307
ApoI RAATTY 1 cut(s) 109
AseI ATTAAT 1 cut(s) 354
AspLEI GCGC 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 307
BanII GRGCYC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 416
BccI CCATC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BmcAI AGTACT 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 307
BmsI GCATC 1 cut(s) 258
BpmI CTGGAG 2 cut(s) 177, 379
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bse1I ACTGG 1 cut(s) 456
BseGI GGATG 2 cut(s) 296, 332
BseMII CTCAG 2 cut(s) 45, 78
BseNI ACTGG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 307
BsoBI CYCGRG 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 416
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 46, 79
BspFNI CGCG 1 cut(s) 66
BsrI ACTGG 1 cut(s) 456
BssNAI GTATAC 1 cut(s) 204
Bst1107I GTATAC 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 334, 401
BstDEI CTNAG 2 cut(s) 54, 87
BstF5I GGATG 2 cut(s) 296, 332
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 36, 338
BstUI CGCG 1 cut(s) 66
BstZ17I GTATAC 1 cut(s) 204
BtsCI GGATG 2 cut(s) 296, 332
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 334, 401
CfoI GCGC 1 cut(s) 66
CseI GACGC 1 cut(s) 330
Csp6I GTAC 2 cut(s) 34, 312
CviAII CATG 1 cut(s) 417
CviJI RGCY 6 cut(s) 17, 30, 155, 399, 414, 455
CviKI_1 RGCY 6 cut(s) 17, 30, 155, 399, 414, 455
CviQI GTAC 2 cut(s) 34, 312
DdeI CTNAG 2 cut(s) 54, 87
Ecl136II GAGCTC 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 416
Eco53kI GAGCTC 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 414
EcoRI GAATTC 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 416
FaeI CATG 1 cut(s) 420
FaiI YATR 4 cut(s) 116, 204, 338, 418
FatI CATG 1 cut(s) 416
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 203
FokI GGATG 2 cut(s) 283, 339
FriOI GRGCYC 1 cut(s) 416
GlaI GCGC 1 cut(s) 65
GsuI CTGGAG 2 cut(s) 177, 379
HgaI GACGC 1 cut(s) 330
HhaI GCGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 420
Hin6I GCGC 1 cut(s) 64
HinP1I GCGC 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 2 cut(s) 88, 215
Hpy188III TCNNGA 2 cut(s) 307, 324
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 2 cut(s) 215, 346
HpyAV CCTTC 2 cut(s) 313, 375
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 2 cut(s) 39, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 338
HpyF3I CTNAG 2 cut(s) 54, 87
Hsp92II CATG 1 cut(s) 420
HspAI GCGC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 5 cut(s) 12, 141, 309, 409, 437
LweI GCATC 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 218
MboII GAAGA 2 cut(s) 103, 161
MhlI GDGCHC 1 cut(s) 416
MluCI AATT 3 cut(s) 109, 249, 355
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 3 cut(s) 49, 209, 364
MseI TTAA 3 cut(s) 261, 354, 457
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 36, 338
NlaIII CATG 1 cut(s) 420
PaeR7I CTCGAG 1 cut(s) 307
PshBI ATTAAT 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 416
RsaI GTAC 2 cut(s) 35, 313
RsaNI GTAC 2 cut(s) 34, 312
SacI GAGCTC 1 cut(s) 416
SaqAI TTAA 3 cut(s) 261, 354, 457
ScaI AGTACT 1 cut(s) 313
SduI GDGCHC 1 cut(s) 416
SetI ASST 7 cut(s) 19, 157, 220, 249, 305, 401, 416
SfaNI GCATC 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 307
SlaI CTCGAG 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 3 cut(s) 109, 249, 355
SsiI CCGC 1 cut(s) 123
SstI GAGCTC 1 cut(s) 416
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 2 cut(s) 308, 369
TasI AATT 3 cut(s) 109, 249, 355
TatI WGTACW 2 cut(s) 33, 311
Tru1I TTAA 3 cut(s) 261, 354, 457
Tru9I TTAA 3 cut(s) 261, 354, 457
TscAI CASTG 1 cut(s) 456
TspRI CASTG 1 cut(s) 456
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.