Rh3DG019900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
1262453 .. 1266712
4260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG019900.1

Sequence Viewer

Length: 1464 bp
ATGATAACAGAGAGAGTGGTAGTCGATTCGCTTAGAAGTGAAGAAACCATCAATAGTGAGAGAGCCTCATTATTGTATTCAGCTTGGAGTGCTTTACTAACTGAATCAGATTCTGGAAAAAGTGATTACTTGCAGAGAAATGGACTAAACAGATCCAGTGTGCCAAACACCCCTCATTTGGAAAACTGCAAGTTGAAAGGACAAGTACACAAGCGCCTTGATAAACATCCCGAGAATGAGAGCCATCCAACAGCTGCAACAAATGAGCAGTCTAGCTATTTTAGGAATCAAGCTATGTCTGAAGCTGCTTATGCTCCTTGGATTACAGGGTCTGACGAAGAAAATTACCCGTCAACACGAAAAGTGCAACGAGACATATGGCTGCATCAGCATCCTTTGAACTGCAGGGATCCTAGTGTAAAGTTTCTCGTAGCTGACTGGGAAAGATTACCTGGATTTGGTATTGGAGGCCAGATTGCTGGAATGTGTGGAGTTCTTGCTATAGCAATGAAGGAAAAAAGGGTCCTTGTTACCAACTACTTTAATCGAGCTGACCATGATGGTTGCAAAGGTTCGTCCCGCTCCAGTTGGTCCTGTTATTTTTTCCCAGAAACATCTCTAGAATGTCGAAATCGTGCATTGGAGCTTATAGAAAGTGAAGATGCCTGGAAAAGTGGCACCATCAAGGCAAAAGATAATTATACTTCAAAGGAAATATGGGCTGGACGAACACCTAGAATATGGGGTGATCCTTGGAGTCATTTGCAACCAACAACAGAAATAAATGGGACTTTGATTGCTTATCATCGCAAAATGGATCGAAGGTGGTGGCGAGCACAGGCAGTACGATACTTGATGCGATTTCAAACCGAGTACACATGTGACTTGCTGAATGTTGCTCGCCATGCGGCATTTGGAAAGCAAGCTGCCGATATGGTAGTCAGAAATTTCGAGGGGGAATGGTCCAAGGATGTTACAGTGAATGAAAGGTCAGATATTGAAGAGTTTGTTTGGTCTAATCACAAGCCATGGATGCCTAGGCCACTACTGAGCATGCATGTAAGGATGGGAGACAAAGCATGTGAAATGAAGGTAGTTGAATTTCAAGAATACATGAGTCTTGCTGGCCGCATTAGAAAGCGATTTCCACAGCTCAACAGTGTTTGGCTTTCCACTGAAATGCAGGAAGTGATTGATAAATCTAAAGGATACCCTCATTGGGACTTCTACTACACAAATGTGACACGTCAAGTGGGAAACATGACAATGGCTGCTTATGAAACAAGTCTTGGTAGAAAAACCAGCACGAACTACCCGCTTGTCAATTTCTTGATGGCAACCGAAGCTGACTTTTTCATTGGAGCGTTGGGTTCTACTTGGTGCTTCCTTATAGATGGAATGAGAAACACCGGAGGGAAAGTTATGGCTGGATATTTGAGTGTCAACAAGGACCGTTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

487

Amino Acids

56.13

Weight (kDa)

8.43

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 677
AccBSI CCGCTC 1 cut(s) 582
AciI CCGC 4 cut(s) 580, 908, 1129, 1316
AclWI GGATC 5 cut(s) 147, 404, 417, 743, 825
AcoI YGGCCR 1 cut(s) 1126
AcsI RAATTY 2 cut(s) 946, 1100
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 3 cut(s) 207, 846, 875
AfiI CCNNNNNNNGG 3 cut(s) 178, 458, 1219
AflIII ACRYGT 2 cut(s) 878, 1244
AgsI TTSAA 7 cut(s) 196, 400, 708, 866, 1001, 1100, 1106
AjiI CACGTC 1 cut(s) 1247
AjnI CCWGG 2 cut(s) 451, 665
AjuI GAANNNNNNNTTGG 2 cut(s) 1272, 1304
AleI CACNNNNGTG 1 cut(s) 1238
Alw21I GWGCWC 1 cut(s) 838
Alw26I GTCTC 2 cut(s) 366, 1065
AlwI GGATC 5 cut(s) 147, 404, 417, 743, 825
AlwNI CAGNNNCTG 2 cut(s) 113, 332
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 3 cut(s) 469, 1040, 1126
ApeKI GCWGC 5 cut(s) 254, 305, 382, 926, 1271
ApoI RAATTY 2 cut(s) 946, 1100
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspA2I CCTAGG 1 cut(s) 1037
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 4 cut(s) 523, 591, 963, 1450
AsuHPI GGTGA 1 cut(s) 758
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 4 cut(s) 523, 591, 963, 1450
AvrII CCTAGG 1 cut(s) 1037
BamHI GGATCC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 5 cut(s) 241, 292, 369, 913, 1258
BccI CCATC 7 cut(s) 56, 252, 554, 689, 1060, 1327, 1388
BciT130I CCWGG 2 cut(s) 453, 667
BciVI GTATCC 1 cut(s) 1202
BcoDI GTCTC 2 cut(s) 366, 1065
BfaI CTAG 5 cut(s) 273, 414, 620, 735, 1038
BfmI CTRYAG 2 cut(s) 403, 501
BfoI RGCGCY 1 cut(s) 217
BfuI GTATCC 1 cut(s) 1202
BisI GCNGC 7 cut(s) 255, 306, 383, 909, 927, 1129, 1272
BlnI CCTAGG 1 cut(s) 1037
BlsI GCNGC 7 cut(s) 256, 307, 384, 910, 928, 1130, 1273
Bme1390I CCNGG 2 cut(s) 453, 667
Bme18I GGWCC 4 cut(s) 523, 591, 963, 1450
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 1247
BmgT120I GGNCC 4 cut(s) 523, 591, 963, 1450
BmiI GGNNCC 3 cut(s) 411, 524, 679
BmrFI CCNGG 2 cut(s) 453, 667
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 5 cut(s) 394, 400, 652, 846, 1023
BmuI ACTGGG 1 cut(s) 448
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 5 cut(s) 317, 752, 966, 1028, 1037
BsaWI WCCGGW 1 cut(s) 1409
BsaXI ACNNNNNCTCC 2 cut(s) 1404, 1434
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 458, 1219
Bse1I ACTGG 3 cut(s) 156, 443, 585
Bse3DI GCAATG 1 cut(s) 513
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 2 cut(s) 453, 667
BseDI CCNNGG 5 cut(s) 317, 752, 966, 1028, 1037
BseGI GGATG 6 cut(s) 226, 244, 391, 976, 1038, 1071
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 178, 458, 1219
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 1040
BseNI ACTGG 3 cut(s) 156, 443, 585
BseXI GCAGC 5 cut(s) 241, 292, 369, 913, 1258
BshFI GGCC 3 cut(s) 471, 1042, 1128
BshNI GGYRCC 1 cut(s) 677
BsiHKAI GWGCWC 1 cut(s) 838
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 1410
BslFI GGGAC 3 cut(s) 562, 802, 1235
BslI CCNNNNNNNGG 3 cut(s) 178, 458, 1219
BsmAI GTCTC 2 cut(s) 366, 1065
BsmFI GGGAC 3 cut(s) 562, 802, 1235
BsnI GGCC 3 cut(s) 471, 1042, 1128
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 838
Bsp143I GATC 4 cut(s) 152, 409, 748, 817
Bsp19I CCATGG 1 cut(s) 1028
BspACI CCGC 4 cut(s) 580, 908, 1129, 1316
BspANI GGCC 3 cut(s) 471, 1042, 1128
BspCNI CTCAG 1 cut(s) 1041
BspLI GGNNCC 3 cut(s) 411, 524, 679
BspMAI CTGCAG 1 cut(s) 407
BspPI GGATC 5 cut(s) 147, 404, 417, 743, 825
BspT107I GGYRCC 1 cut(s) 677
BsrBI CCGCTC 1 cut(s) 582
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 3 cut(s) 156, 443, 585
BssECI CCNNGG 5 cut(s) 317, 752, 966, 1028, 1037
BssMI GATC 4 cut(s) 152, 409, 748, 817
BssT1I CCWWGG 5 cut(s) 317, 752, 966, 1028, 1037
Bst2UI CCWGG 2 cut(s) 453, 667
Bst4CI ACNGT 3 cut(s) 979, 1160, 1454
Bst6I CTCTTC 1 cut(s) 996
BstC8I GCNNGC 5 cut(s) 834, 901, 924, 1055, 1126
BstDEI CTNAG 2 cut(s) 32, 1049
BstDSI CCRYGG 1 cut(s) 1028
BstF5I GGATG 6 cut(s) 226, 244, 391, 976, 1038, 1071
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 4 cut(s) 155, 412, 751, 820
BstMAI GTCTC 2 cut(s) 366, 1065
BstMBI GATC 4 cut(s) 152, 409, 748, 817
BstMWI GCNNNNNNNGC 6 cut(s) 89, 311, 388, 905, 1033, 1343
BstNI CCWGG 2 cut(s) 453, 667
BstNSI RCATGY 4 cut(s) 882, 1057, 1061, 1083
BstSCI CCNGG 2 cut(s) 451, 665
BstSFI CTRYAG 2 cut(s) 403, 501
BstV1I GCAGC 5 cut(s) 241, 292, 369, 913, 1258
BstX2I RGATCY 2 cut(s) 152, 409
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 2 cut(s) 152, 409
BsuI GTATCC 1 cut(s) 1202
BsuRI GGCC 3 cut(s) 471, 1042, 1128
BtgI CCRYGG 1 cut(s) 1028
BtgZI GCGATG 1 cut(s) 791
BtrI CACGTC 1 cut(s) 1247
BtsCI GGATG 6 cut(s) 226, 244, 391, 976, 1038, 1071
BtsIMutI CAGTG 4 cut(s) 163, 984, 1165, 1173
Cac8I GCNNGC 5 cut(s) 834, 901, 924, 1055, 1126
CaiI CAGNNNCTG 2 cut(s) 113, 332
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 4 cut(s) 523, 591, 963, 1450
Csp6I GTAC 3 cut(s) 206, 845, 874
CviAII CATG 9 cut(s) 557, 879, 905, 1029, 1054, 1058, 1080, 1114, 1261
CviQI GTAC 3 cut(s) 206, 845, 874
DdeI CTNAG 2 cut(s) 32, 1049
DpnI GATC 4 cut(s) 154, 411, 750, 819
DpnII GATC 4 cut(s) 152, 409, 748, 817
EaeI YGGCCR 1 cut(s) 1126
Eam1104I CTCTTC 1 cut(s) 996
EarI CTCTTC 1 cut(s) 996
Eco130I CCWWGG 5 cut(s) 317, 752, 966, 1028, 1037
Eco47I GGWCC 4 cut(s) 523, 591, 963, 1450
Eco57I CTGAAG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 451, 665
EcoT14I CCWWGG 5 cut(s) 317, 752, 966, 1028, 1037
EcoT22I ATGCAT 1 cut(s) 1059
ErhI CCWWGG 5 cut(s) 317, 752, 966, 1028, 1037
FaeI CATG 9 cut(s) 560, 882, 908, 1032, 1057, 1061, 1083, 1117, 1264
FaqI GGGAC 3 cut(s) 562, 802, 1235
FatI CATG 9 cut(s) 556, 878, 904, 1028, 1053, 1057, 1079, 1113, 1260
FauI CCCGC 2 cut(s) 587, 1323
FauNDI CATATG 1 cut(s) 377
Fnu4HI GCNGC 7 cut(s) 255, 306, 383, 909, 927, 1129, 1272
FokI GGATG 6 cut(s) 213, 231, 378, 983, 1045, 1078
Fsp4HI GCNGC 7 cut(s) 255, 306, 383, 909, 927, 1129, 1272
FspBI CTAG 5 cut(s) 273, 414, 620, 735, 1038
GlaI GCGC 1 cut(s) 215
GluI GCNGC 7 cut(s) 255, 306, 383, 909, 927, 1129, 1272
GsuI CTGGAG 1 cut(s) 568
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 3 cut(s) 471, 1042, 1128
HapII CCGG 1 cut(s) 1410
HhaI GCGC 1 cut(s) 216
Hin1II CATG 9 cut(s) 560, 882, 908, 1032, 1057, 1061, 1083, 1117, 1264
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HincII GTYRAC 2 cut(s) 354, 1444
HindII GTYRAC 2 cut(s) 354, 1444
HinfI GANTC 6 cut(s) 26, 104, 110, 286, 757, 1117
HpaII CCGG 1 cut(s) 1410
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 4 cut(s) 208, 354, 876, 1444
Hpy188I TCNGA 5 cut(s) 109, 301, 334, 944, 994
Hpy188III TCNNGA 5 cut(s) 114, 230, 620, 1106, 1330
Hpy8I GTNNAC 4 cut(s) 208, 354, 876, 1444
HpyAV CCTTC 3 cut(s) 505, 816, 1084
HpyCH4III ACNGT 3 cut(s) 979, 1160, 1454
HpyCH4IV ACGT 1 cut(s) 1246
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 311, 388, 905, 1033, 1343
HpyF3I CTNAG 2 cut(s) 32, 1049
HpySE526I ACGT 1 cut(s) 1246
Hsp92II CATG 9 cut(s) 560, 882, 908, 1032, 1057, 1061, 1083, 1117, 1264
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 4 cut(s) 152, 409, 748, 817
LmnI GCTCC 4 cut(s) 319, 587, 643, 1361
Lsp1109I GCAGC 5 cut(s) 241, 292, 369, 913, 1258
LweI GCATC 5 cut(s) 394, 400, 652, 846, 1023
MaeI CTAG 5 cut(s) 273, 414, 620, 735, 1038
MaeII ACGT 1 cut(s) 1246
MaeIII GTNAC 4 cut(s) 529, 881, 973, 1240
MalI GATC 4 cut(s) 154, 411, 750, 819
MbiI CCGCTC 1 cut(s) 582
MboI GATC 4 cut(s) 152, 409, 748, 817
MboII GAAGA 4 cut(s) 53, 350, 671, 1013
MflI RGATCY 2 cut(s) 152, 409
MhlI GDGCHC 1 cut(s) 838
MluCI AATT 5 cut(s) 343, 697, 946, 1100, 1324
MlyI GAGTC 2 cut(s) 766, 1126
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 6 cut(s) 76, 183, 461, 946, 1224, 1406
Mph1103I ATGCAT 1 cut(s) 1059
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 3 cut(s) 1178, 1238, 1265
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 1 cut(s) 1410
MspR9I CCNGG 2 cut(s) 453, 667
MvaI CCWGG 2 cut(s) 453, 667
MwoI GCNNNNNNNGC 6 cut(s) 89, 311, 388, 905, 1033, 1343
NcoI CCATGG 1 cut(s) 1028
NdeI CATATG 1 cut(s) 377
NdeII GATC 4 cut(s) 152, 409, 748, 817
NlaIII CATG 9 cut(s) 560, 882, 908, 1032, 1057, 1061, 1083, 1117, 1264
NlaIV GGNNCC 3 cut(s) 411, 524, 679
NmuCI GTSAC 2 cut(s) 881, 1240
NsiI ATGCAT 1 cut(s) 1059
NspI RCATGY 4 cut(s) 882, 1057, 1061, 1083
OliI CACNNNNGTG 1 cut(s) 1238
PaeI GCATGC 1 cut(s) 1057
PciI ACATGT 1 cut(s) 878
PfeI GAWTC 4 cut(s) 26, 104, 110, 286
PkrI GCNGC 7 cut(s) 256, 307, 384, 910, 928, 1130, 1273
PleI GAGTC 2 cut(s) 765, 1125
PpsI GAGTC 2 cut(s) 765, 1125
PpuMI RGGWCCY 1 cut(s) 523
PscI ACATGT 1 cut(s) 878
Psp5II RGGWCCY 1 cut(s) 523
Psp6I CCWGG 2 cut(s) 451, 665
PspGI CCWGG 2 cut(s) 451, 665
PspN4I GGNNCC 3 cut(s) 411, 524, 679
PspPI GGNCC 4 cut(s) 523, 591, 963, 1450
PspPPI RGGWCCY 1 cut(s) 523
PstI CTGCAG 1 cut(s) 407
PstNI CAGNNNCTG 2 cut(s) 113, 332
PsuI RGATCY 2 cut(s) 152, 409
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 3 cut(s) 207, 846, 875
RsaNI GTAC 3 cut(s) 206, 845, 874
RseI CAYNNNNRTG 3 cut(s) 1178, 1238, 1265
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 7 cut(s) 255, 306, 383, 909, 927, 1129, 1272
Sau3AI GATC 4 cut(s) 152, 409, 748, 817
Sau96I GGNCC 4 cut(s) 523, 591, 963, 1450
SchI GAGTC 2 cut(s) 766, 1126
ScrFI CCNGG 2 cut(s) 453, 667
SduI GDGCHC 1 cut(s) 838
SfaNI GCATC 5 cut(s) 394, 400, 652, 846, 1023
SfcI CTRYAG 2 cut(s) 403, 501
SinI GGWCC 4 cut(s) 523, 591, 963, 1450
SmiMI CAYNNNNRTG 3 cut(s) 1178, 1238, 1265
SphI GCATGC 1 cut(s) 1057
Sse9I AATT 5 cut(s) 343, 697, 946, 1100, 1324
SsiI CCGC 4 cut(s) 580, 908, 1129, 1316
SspMI CTAG 5 cut(s) 273, 414, 620, 735, 1038
StyD4I CCNGG 2 cut(s) 451, 665
StyI CCWWGG 5 cut(s) 317, 752, 966, 1028, 1037
TaaI ACNGT 3 cut(s) 979, 1160, 1454
TaiI ACGT 1 cut(s) 1249
TaqI TCGA 5 cut(s) 24, 547, 628, 820, 951
TasI AATT 5 cut(s) 343, 697, 946, 1100, 1324
TatI WGTACW 2 cut(s) 205, 873
TauI GCSGC 2 cut(s) 911, 1131
TfiI GAWTC 4 cut(s) 26, 104, 110, 286
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 4 cut(s) 163, 984, 1165, 1180
TseFI GTSAC 2 cut(s) 881, 1240
TseI GCWGC 5 cut(s) 254, 305, 382, 926, 1271
Tsp45I GTSAC 2 cut(s) 881, 1240
TspDTI ATGAA 5 cut(s) 524, 999, 1103, 1293, 1345
TspRI CASTG 4 cut(s) 163, 984, 1165, 1180
VpaK11BI GGWCC 4 cut(s) 523, 591, 963, 1450
XapI RAATTY 2 cut(s) 946, 1100
XbaI TCTAGA 1 cut(s) 619
XceI RCATGY 4 cut(s) 882, 1057, 1061, 1083
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XmaJI CCTAGG 1 cut(s) 1037
XspI CTAG 5 cut(s) 273, 414, 620, 735, 1038
Zsp2I ATGCAT 1 cut(s) 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.