No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G28910 AT5G28910 AT5G28960 |
| fragaria_vesca | FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 FvH4_6g01760 |
| malus_domestica | MD04G1231000.v1.1 MD12G1249300.v1.1 |
| prunus_persica | Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 Prupe.6G350700_v2.0.a1 |
| pyrus_communis | pycom04g20460 |
| rosa_chinensis | RchiOBHm_Chr3g0449501 |
| rosa_laevigata | RLG00000025821 |
| rosa_multiflora | Rmu_co8438485.1_g000001 Rmu_sc0000430.1_g000017 |
| rosa_roxburghii | Rroxscaffold_6G00427460 |
| rosa_rugosa | Rorug02G0621800 Rorug02G0621900 Rorug02G0622000 Rorug02G0622000 |
| rosa_samantha | Rh3AG019900 Rh3BG019900 Rh3CG018600 Rh3DG019900 |
| rosa_wichuraiana | Rw3G001580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 677 |
| AccBSI | CCGCTC | 1 cut(s) | 582 |
| AciI | CCGC | 4 cut(s) | 580, 908, 1129, 1316 |
| AclWI | GGATC | 5 cut(s) | 147, 404, 417, 743, 825 |
| AcoI | YGGCCR | 1 cut(s) | 1126 |
| AcsI | RAATTY | 2 cut(s) | 946, 1100 |
| AcuI | CTGAAG | 1 cut(s) | 321 |
| AfaI | GTAC | 3 cut(s) | 207, 846, 875 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 178, 458, 1219 |
| AflIII | ACRYGT | 2 cut(s) | 878, 1244 |
| AgsI | TTSAA | 7 cut(s) | 196, 400, 708, 866, 1001, 1100, 1106 |
| AjiI | CACGTC | 1 cut(s) | 1247 |
| AjnI | CCWGG | 2 cut(s) | 451, 665 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1272, 1304 |
| AleI | CACNNNNGTG | 1 cut(s) | 1238 |
| Alw21I | GWGCWC | 1 cut(s) | 838 |
| Alw26I | GTCTC | 2 cut(s) | 366, 1065 |
| AlwI | GGATC | 5 cut(s) | 147, 404, 417, 743, 825 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 113, 332 |
| Ama87I | CYCGRG | 1 cut(s) | 230 |
| AoxI | GGCC | 3 cut(s) | 469, 1040, 1126 |
| ApeKI | GCWGC | 5 cut(s) | 254, 305, 382, 926, 1271 |
| ApoI | RAATTY | 2 cut(s) | 946, 1100 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 254, 286 |
| AspA2I | CCTAGG | 1 cut(s) | 1037 |
| AspLEI | GCGC | 1 cut(s) | 216 |
| AspS9I | GGNCC | 4 cut(s) | 523, 591, 963, 1450 |
| AsuHPI | GGTGA | 1 cut(s) | 758 |
| AvaI | CYCGRG | 1 cut(s) | 230 |
| AvaII | GGWCC | 4 cut(s) | 523, 591, 963, 1450 |
| AvrII | CCTAGG | 1 cut(s) | 1037 |
| BamHI | GGATCC | 1 cut(s) | 409 |
| BanI | GGYRCC | 1 cut(s) | 677 |
| Bbv12I | GWGCWC | 1 cut(s) | 838 |
| BbvI | GCAGC | 5 cut(s) | 241, 292, 369, 913, 1258 |
| BccI | CCATC | 7 cut(s) | 56, 252, 554, 689, 1060, 1327, 1388 |
| BciT130I | CCWGG | 2 cut(s) | 453, 667 |
| BciVI | GTATCC | 1 cut(s) | 1202 |
| BcoDI | GTCTC | 2 cut(s) | 366, 1065 |
| BfaI | CTAG | 5 cut(s) | 273, 414, 620, 735, 1038 |
| BfmI | CTRYAG | 2 cut(s) | 403, 501 |
| BfoI | RGCGCY | 1 cut(s) | 217 |
| BfuI | GTATCC | 1 cut(s) | 1202 |
| BisI | GCNGC | 7 cut(s) | 255, 306, 383, 909, 927, 1129, 1272 |
| BlnI | CCTAGG | 1 cut(s) | 1037 |
| BlsI | GCNGC | 7 cut(s) | 256, 307, 384, 910, 928, 1130, 1273 |
| Bme1390I | CCNGG | 2 cut(s) | 453, 667 |
| Bme18I | GGWCC | 4 cut(s) | 523, 591, 963, 1450 |
| BmeT110I | CYCGRG | 1 cut(s) | 230 |
| BmgBI | CACGTC | 1 cut(s) | 1247 |
| BmgT120I | GGNCC | 4 cut(s) | 523, 591, 963, 1450 |
| BmiI | GGNNCC | 3 cut(s) | 411, 524, 679 |
| BmrFI | CCNGG | 2 cut(s) | 453, 667 |
| BmrI | ACTGGG | 1 cut(s) | 448 |
| BmsI | GCATC | 5 cut(s) | 394, 400, 652, 846, 1023 |
| BmuI | ACTGGG | 1 cut(s) | 448 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 50, 82 |
| BpmI | CTGGAG | 1 cut(s) | 568 |
| BsaBI | GATNNNNATC | 1 cut(s) | 225 |
| BsaJI | CCNNGG | 5 cut(s) | 317, 752, 966, 1028, 1037 |
| BsaWI | WCCGGW | 1 cut(s) | 1409 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1404, 1434 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 178, 458, 1219 |
| Bse1I | ACTGG | 3 cut(s) | 156, 443, 585 |
| Bse3DI | GCAATG | 1 cut(s) | 513 |
| Bse8I | GATNNNNATC | 1 cut(s) | 225 |
| BseBI | CCWGG | 2 cut(s) | 453, 667 |
| BseDI | CCNNGG | 5 cut(s) | 317, 752, 966, 1028, 1037 |
| BseGI | GGATG | 6 cut(s) | 226, 244, 391, 976, 1038, 1071 |
| BseJI | GATNNNNATC | 1 cut(s) | 225 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 178, 458, 1219 |
| BseMI | GCAATG | 1 cut(s) | 513 |
| BseMII | CTCAG | 1 cut(s) | 1040 |
| BseNI | ACTGG | 3 cut(s) | 156, 443, 585 |
| BseXI | GCAGC | 5 cut(s) | 241, 292, 369, 913, 1258 |
| BshFI | GGCC | 3 cut(s) | 471, 1042, 1128 |
| BshNI | GGYRCC | 1 cut(s) | 677 |
| BsiHKAI | GWGCWC | 1 cut(s) | 838 |
| BsiHKCI | CYCGRG | 1 cut(s) | 230 |
| BsiSI | CCGG | 1 cut(s) | 1410 |
| BslFI | GGGAC | 3 cut(s) | 562, 802, 1235 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 178, 458, 1219 |
| BsmAI | GTCTC | 2 cut(s) | 366, 1065 |
| BsmFI | GGGAC | 3 cut(s) | 562, 802, 1235 |
| BsnI | GGCC | 3 cut(s) | 471, 1042, 1128 |
| BsoBI | CYCGRG | 1 cut(s) | 230 |
| Bsp1286I | GDGCHC | 1 cut(s) | 838 |
| Bsp143I | GATC | 4 cut(s) | 152, 409, 748, 817 |
| Bsp19I | CCATGG | 1 cut(s) | 1028 |
| BspACI | CCGC | 4 cut(s) | 580, 908, 1129, 1316 |
| BspANI | GGCC | 3 cut(s) | 471, 1042, 1128 |
| BspCNI | CTCAG | 1 cut(s) | 1041 |
| BspLI | GGNNCC | 3 cut(s) | 411, 524, 679 |
| BspMAI | CTGCAG | 1 cut(s) | 407 |
| BspPI | GGATC | 5 cut(s) | 147, 404, 417, 743, 825 |
| BspT107I | GGYRCC | 1 cut(s) | 677 |
| BsrBI | CCGCTC | 1 cut(s) | 582 |
| BsrDI | GCAATG | 1 cut(s) | 513 |
| BsrI | ACTGG | 3 cut(s) | 156, 443, 585 |
| BssECI | CCNNGG | 5 cut(s) | 317, 752, 966, 1028, 1037 |
| BssMI | GATC | 4 cut(s) | 152, 409, 748, 817 |
| BssT1I | CCWWGG | 5 cut(s) | 317, 752, 966, 1028, 1037 |
| Bst2UI | CCWGG | 2 cut(s) | 453, 667 |
| Bst4CI | ACNGT | 3 cut(s) | 979, 1160, 1454 |
| Bst6I | CTCTTC | 1 cut(s) | 996 |
| BstC8I | GCNNGC | 5 cut(s) | 834, 901, 924, 1055, 1126 |
| BstDEI | CTNAG | 2 cut(s) | 32, 1049 |
| BstDSI | CCRYGG | 1 cut(s) | 1028 |
| BstF5I | GGATG | 6 cut(s) | 226, 244, 391, 976, 1038, 1071 |
| BstH2I | RGCGCY | 1 cut(s) | 217 |
| BstHHI | GCGC | 1 cut(s) | 216 |
| BstKTI | GATC | 4 cut(s) | 155, 412, 751, 820 |
| BstMAI | GTCTC | 2 cut(s) | 366, 1065 |
| BstMBI | GATC | 4 cut(s) | 152, 409, 748, 817 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 89, 311, 388, 905, 1033, 1343 |
| BstNI | CCWGG | 2 cut(s) | 453, 667 |
| BstNSI | RCATGY | 4 cut(s) | 882, 1057, 1061, 1083 |
| BstSCI | CCNGG | 2 cut(s) | 451, 665 |
| BstSFI | CTRYAG | 2 cut(s) | 403, 501 |
| BstV1I | GCAGC | 5 cut(s) | 241, 292, 369, 913, 1258 |
| BstX2I | RGATCY | 2 cut(s) | 152, 409 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 479 |
| BstYI | RGATCY | 2 cut(s) | 152, 409 |
| BsuI | GTATCC | 1 cut(s) | 1202 |
| BsuRI | GGCC | 3 cut(s) | 471, 1042, 1128 |
| BtgI | CCRYGG | 1 cut(s) | 1028 |
| BtgZI | GCGATG | 1 cut(s) | 791 |
| BtrI | CACGTC | 1 cut(s) | 1247 |
| BtsCI | GGATG | 6 cut(s) | 226, 244, 391, 976, 1038, 1071 |
| BtsIMutI | CAGTG | 4 cut(s) | 163, 984, 1165, 1173 |
| Cac8I | GCNNGC | 5 cut(s) | 834, 901, 924, 1055, 1126 |
| CaiI | CAGNNNCTG | 2 cut(s) | 113, 332 |
| CfoI | GCGC | 1 cut(s) | 216 |
| Cfr13I | GGNCC | 4 cut(s) | 523, 591, 963, 1450 |
| Csp6I | GTAC | 3 cut(s) | 206, 845, 874 |
| CviAII | CATG | 9 cut(s) | 557, 879, 905, 1029, 1054, 1058, 1080, 1114, 1261 |
| CviQI | GTAC | 3 cut(s) | 206, 845, 874 |
| DdeI | CTNAG | 2 cut(s) | 32, 1049 |
| DpnI | GATC | 4 cut(s) | 154, 411, 750, 819 |
| DpnII | GATC | 4 cut(s) | 152, 409, 748, 817 |
| EaeI | YGGCCR | 1 cut(s) | 1126 |
| Eam1104I | CTCTTC | 1 cut(s) | 996 |
| EarI | CTCTTC | 1 cut(s) | 996 |
| Eco130I | CCWWGG | 5 cut(s) | 317, 752, 966, 1028, 1037 |
| Eco47I | GGWCC | 4 cut(s) | 523, 591, 963, 1450 |
| Eco57I | CTGAAG | 1 cut(s) | 321 |
| Eco88I | CYCGRG | 1 cut(s) | 230 |
| EcoO109I | RGGNCCY | 1 cut(s) | 523 |
| EcoRII | CCWGG | 2 cut(s) | 451, 665 |
| EcoT14I | CCWWGG | 5 cut(s) | 317, 752, 966, 1028, 1037 |
| EcoT22I | ATGCAT | 1 cut(s) | 1059 |
| ErhI | CCWWGG | 5 cut(s) | 317, 752, 966, 1028, 1037 |
| FaeI | CATG | 9 cut(s) | 560, 882, 908, 1032, 1057, 1061, 1083, 1117, 1264 |
| FaqI | GGGAC | 3 cut(s) | 562, 802, 1235 |
| FatI | CATG | 9 cut(s) | 556, 878, 904, 1028, 1053, 1057, 1079, 1113, 1260 |
| FauI | CCCGC | 2 cut(s) | 587, 1323 |
| FauNDI | CATATG | 1 cut(s) | 377 |
| Fnu4HI | GCNGC | 7 cut(s) | 255, 306, 383, 909, 927, 1129, 1272 |
| FokI | GGATG | 6 cut(s) | 213, 231, 378, 983, 1045, 1078 |
| Fsp4HI | GCNGC | 7 cut(s) | 255, 306, 383, 909, 927, 1129, 1272 |
| FspBI | CTAG | 5 cut(s) | 273, 414, 620, 735, 1038 |
| GlaI | GCGC | 1 cut(s) | 215 |
| GluI | GCNGC | 7 cut(s) | 255, 306, 383, 909, 927, 1129, 1272 |
| GsuI | CTGGAG | 1 cut(s) | 568 |
| HaeII | RGCGCY | 1 cut(s) | 217 |
| HaeIII | GGCC | 3 cut(s) | 471, 1042, 1128 |
| HapII | CCGG | 1 cut(s) | 1410 |
| HhaI | GCGC | 1 cut(s) | 216 |
| Hin1II | CATG | 9 cut(s) | 560, 882, 908, 1032, 1057, 1061, 1083, 1117, 1264 |
| Hin6I | GCGC | 1 cut(s) | 214 |
| HinP1I | GCGC | 1 cut(s) | 214 |
| HincII | GTYRAC | 2 cut(s) | 354, 1444 |
| HindII | GTYRAC | 2 cut(s) | 354, 1444 |
| HinfI | GANTC | 6 cut(s) | 26, 104, 110, 286, 757, 1117 |
| HpaII | CCGG | 1 cut(s) | 1410 |
| HphI | GGTGA | 1 cut(s) | 758 |
| Hpy166II | GTNNAC | 4 cut(s) | 208, 354, 876, 1444 |
| Hpy188I | TCNGA | 5 cut(s) | 109, 301, 334, 944, 994 |
| Hpy188III | TCNNGA | 5 cut(s) | 114, 230, 620, 1106, 1330 |
| Hpy8I | GTNNAC | 4 cut(s) | 208, 354, 876, 1444 |
| HpyAV | CCTTC | 3 cut(s) | 505, 816, 1084 |
| HpyCH4III | ACNGT | 3 cut(s) | 979, 1160, 1454 |
| HpyCH4IV | ACGT | 1 cut(s) | 1246 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 89, 311, 388, 905, 1033, 1343 |
| HpyF3I | CTNAG | 2 cut(s) | 32, 1049 |
| HpySE526I | ACGT | 1 cut(s) | 1246 |
| Hsp92II | CATG | 9 cut(s) | 560, 882, 908, 1032, 1057, 1061, 1083, 1117, 1264 |
| HspAI | GCGC | 1 cut(s) | 214 |
| Kzo9I | GATC | 4 cut(s) | 152, 409, 748, 817 |
| LmnI | GCTCC | 4 cut(s) | 319, 587, 643, 1361 |
| Lsp1109I | GCAGC | 5 cut(s) | 241, 292, 369, 913, 1258 |
| LweI | GCATC | 5 cut(s) | 394, 400, 652, 846, 1023 |
| MaeI | CTAG | 5 cut(s) | 273, 414, 620, 735, 1038 |
| MaeII | ACGT | 1 cut(s) | 1246 |
| MaeIII | GTNAC | 4 cut(s) | 529, 881, 973, 1240 |
| MalI | GATC | 4 cut(s) | 154, 411, 750, 819 |
| MbiI | CCGCTC | 1 cut(s) | 582 |
| MboI | GATC | 4 cut(s) | 152, 409, 748, 817 |
| MboII | GAAGA | 4 cut(s) | 53, 350, 671, 1013 |
| MflI | RGATCY | 2 cut(s) | 152, 409 |
| MhlI | GDGCHC | 1 cut(s) | 838 |
| MluCI | AATT | 5 cut(s) | 343, 697, 946, 1100, 1324 |
| MlyI | GAGTC | 2 cut(s) | 766, 1126 |
| MmeI | TCCRAC | 1 cut(s) | 272 |
| MnlI | CCTC | 6 cut(s) | 76, 183, 461, 946, 1224, 1406 |
| Mph1103I | ATGCAT | 1 cut(s) | 1059 |
| MseI | TTAA | 1 cut(s) | 543 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1178, 1238, 1265 |
| MspA1I | CMGCKG | 1 cut(s) | 254 |
| MspI | CCGG | 1 cut(s) | 1410 |
| MspR9I | CCNGG | 2 cut(s) | 453, 667 |
| MvaI | CCWGG | 2 cut(s) | 453, 667 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 89, 311, 388, 905, 1033, 1343 |
| NcoI | CCATGG | 1 cut(s) | 1028 |
| NdeI | CATATG | 1 cut(s) | 377 |
| NdeII | GATC | 4 cut(s) | 152, 409, 748, 817 |
| NlaIII | CATG | 9 cut(s) | 560, 882, 908, 1032, 1057, 1061, 1083, 1117, 1264 |
| NlaIV | GGNNCC | 3 cut(s) | 411, 524, 679 |
| NmuCI | GTSAC | 2 cut(s) | 881, 1240 |
| NsiI | ATGCAT | 1 cut(s) | 1059 |
| NspI | RCATGY | 4 cut(s) | 882, 1057, 1061, 1083 |
| OliI | CACNNNNGTG | 1 cut(s) | 1238 |
| PaeI | GCATGC | 1 cut(s) | 1057 |
| PciI | ACATGT | 1 cut(s) | 878 |
| PfeI | GAWTC | 4 cut(s) | 26, 104, 110, 286 |
| PkrI | GCNGC | 7 cut(s) | 256, 307, 384, 910, 928, 1130, 1273 |
| PleI | GAGTC | 2 cut(s) | 765, 1125 |
| PpsI | GAGTC | 2 cut(s) | 765, 1125 |
| PpuMI | RGGWCCY | 1 cut(s) | 523 |
| PscI | ACATGT | 1 cut(s) | 878 |
| Psp5II | RGGWCCY | 1 cut(s) | 523 |
| Psp6I | CCWGG | 2 cut(s) | 451, 665 |
| PspGI | CCWGG | 2 cut(s) | 451, 665 |
| PspN4I | GGNNCC | 3 cut(s) | 411, 524, 679 |
| PspPI | GGNCC | 4 cut(s) | 523, 591, 963, 1450 |
| PspPPI | RGGWCCY | 1 cut(s) | 523 |
| PstI | CTGCAG | 1 cut(s) | 407 |
| PstNI | CAGNNNCTG | 2 cut(s) | 113, 332 |
| PsuI | RGATCY | 2 cut(s) | 152, 409 |
| PvuII | CAGCTG | 1 cut(s) | 254 |
| RsaI | GTAC | 3 cut(s) | 207, 846, 875 |
| RsaNI | GTAC | 3 cut(s) | 206, 845, 874 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1178, 1238, 1265 |
| SaqAI | TTAA | 1 cut(s) | 543 |
| SatI | GCNGC | 7 cut(s) | 255, 306, 383, 909, 927, 1129, 1272 |
| Sau3AI | GATC | 4 cut(s) | 152, 409, 748, 817 |
| Sau96I | GGNCC | 4 cut(s) | 523, 591, 963, 1450 |
| SchI | GAGTC | 2 cut(s) | 766, 1126 |
| ScrFI | CCNGG | 2 cut(s) | 453, 667 |
| SduI | GDGCHC | 1 cut(s) | 838 |
| SfaNI | GCATC | 5 cut(s) | 394, 400, 652, 846, 1023 |
| SfcI | CTRYAG | 2 cut(s) | 403, 501 |
| SinI | GGWCC | 4 cut(s) | 523, 591, 963, 1450 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1178, 1238, 1265 |
| SphI | GCATGC | 1 cut(s) | 1057 |
| Sse9I | AATT | 5 cut(s) | 343, 697, 946, 1100, 1324 |
| SsiI | CCGC | 4 cut(s) | 580, 908, 1129, 1316 |
| SspMI | CTAG | 5 cut(s) | 273, 414, 620, 735, 1038 |
| StyD4I | CCNGG | 2 cut(s) | 451, 665 |
| StyI | CCWWGG | 5 cut(s) | 317, 752, 966, 1028, 1037 |
| TaaI | ACNGT | 3 cut(s) | 979, 1160, 1454 |
| TaiI | ACGT | 1 cut(s) | 1249 |
| TaqI | TCGA | 5 cut(s) | 24, 547, 628, 820, 951 |
| TasI | AATT | 5 cut(s) | 343, 697, 946, 1100, 1324 |
| TatI | WGTACW | 2 cut(s) | 205, 873 |
| TauI | GCSGC | 2 cut(s) | 911, 1131 |
| TfiI | GAWTC | 4 cut(s) | 26, 104, 110, 286 |
| Tru1I | TTAA | 1 cut(s) | 543 |
| Tru9I | TTAA | 1 cut(s) | 543 |
| TscAI | CASTG | 4 cut(s) | 163, 984, 1165, 1180 |
| TseFI | GTSAC | 2 cut(s) | 881, 1240 |
| TseI | GCWGC | 5 cut(s) | 254, 305, 382, 926, 1271 |
| Tsp45I | GTSAC | 2 cut(s) | 881, 1240 |
| TspDTI | ATGAA | 5 cut(s) | 524, 999, 1103, 1293, 1345 |
| TspRI | CASTG | 4 cut(s) | 163, 984, 1165, 1180 |
| VpaK11BI | GGWCC | 4 cut(s) | 523, 591, 963, 1450 |
| XapI | RAATTY | 2 cut(s) | 946, 1100 |
| XbaI | TCTAGA | 1 cut(s) | 619 |
| XceI | RCATGY | 4 cut(s) | 882, 1057, 1061, 1083 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 911 |
| XmaJI | CCTAGG | 1 cut(s) | 1037 |
| XspI | CTAG | 5 cut(s) | 273, 414, 620, 735, 1038 |
| Zsp2I | ATGCAT | 1 cut(s) | 1059 |