AT5G28960

Encoded by

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
10996524 .. 10998901
2378 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28960.1

Sequence Viewer

Length: 1611 bp
ATGAGCATGAAGTCATTGAACAGAATGGTTTCAGAGAAAGCATTAAAACTTGGAAATTCATTTCCATGTCAAATCTGTGTAGTTGGGATTCTATGTGGAATCTGTTTCACTTCACTCTTCTTAGCAGCTCTTACTTCCCTTGGCACCTTCGAGCTCGCAGCCTTCTCTTTATCTGCCTCCTCCTCTGCTTTTCTTCCTTACAATTCCACTTCTCACATTATCCATATGGTTTCAAGCATGGACCGGAAATTGAAATGGACGAACAAAGCTGAGAAAGGAGATAATGATGATCAAGTAAAACTTTTGGTCTCTGCTTGGGACAATTTAGTACTAAACAATGAAGACTTCTTGAAGAAACTAGGGATGAACAAATCCGATGTACCAAACGCTCCACATTTGGAGAATTGTGAGGTGATATCACGAGTTAGGGAGCGTTTAGATACACGGATAGCGAACCAGTCGTTTCCTACTTGGATCACTGGAGGAGACGAACAGAACTATCCGTTAACTAGGATAGTACAAAGTGAGATATGGATTCATCAACATCCTTTGGACTGCGAAAACGAAACTGTCAAGTTCCTTGTAGTTGATTGGGAAACACTTCCTATTTATGGATCCGGAGCTCAGATCACTGAAATGACTGGTCTTCTCGCAATCGCTATAAACGAAAACCGAGTGCTTGTTGCAAATCATTATAACCGAGCAGATCATGATGGTTGCAGAGGTTCTTCTCGTGGAAGATGGTCATGCTATTTTCTACCTGAAACGTCGGAAGAGTGTCGGAAACGCGCGTTTGCGGTTGTAAGGGAGAAAGAAGCATGGGAGAGTGGTACTGTTACAGGGAAACAAAACTACAGCTCAAAGGTGATATGGGCTGGACCTATACCAAAACTATGGGGTAAGCCTTGGAGTTATATGAAGCCTACTACAGAAATCAACGGAAGTTTAATCTCTAAACACCGAAAAATGGATCGAAGATGGTGGAGAGCACAAGCAGTGAGATACTTGATGAGATTTCAAACTGCATACACTTGCGGTTTAATGAACGCTGCTCGAAACACCGCGTTTGGAAAAGAAGCTGCCGAGATTGTTCTTTCAGCGGGAGATTGGAGAAAGAACAAGAAGAAAAAGGTTAAGACAGAGATTGAGGAACAAGTATGGTCGAACCACAAGCCGTGGGTTCCAAGGCCAATGCTAAGTGTGCACGTACGGATGGGAGACAAAGCGTGTGAGATGAGAGTCGCGGCTTTAGAAGAGTACATGCATTTAGCTGATCGGATCAAAGATCGATTTCCGGAGCTTAACAAGATCTGGTTGTCTACAGAGATGAAGGAAGTTGTGGACAAAAGTAAAGATTATGATCATTGGAGATTCTATTACACGGAAGTGGCGAGACAAGTTGGTAATAAGTCGATTGCTGAGTATGAAGCTAGCCTTGGGAGAGAGACAAGCACGAACTATCCTCTTGTTAACTTCTTAATGGCGTCAGAAGCTGATTTTTTCGTTGGAGCTTTGGGTTCCACTTGGTGTTTCCTCATCGATGGTATGAGGAATACTGGTGGGAAAGTCATGTCCGGTTATCTTAGTGTCAATAAAGATCGGTTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

536

Amino Acids

61.25

Weight (kDa)

8.88

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AccB1I GGYRCC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 1319
AccII CGCG 4 cut(s) 789, 791, 1064, 1244
AccIII TCCGGA 2 cut(s) 617, 1294
AciI CCGC 5 cut(s) 797, 1035, 1062, 1100, 1244
AclWI GGATC 5 cut(s) 482, 609, 622, 978, 1286
AcsI RAATTY 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 1484
AdeI CACNNNGTG 1 cut(s) 1527
AfaI GTAC 6 cut(s) 330, 381, 519, 832, 1209, 1259
AfiI CCNNNNNNNGG 2 cut(s) 611, 967
AgsI TTSAA 5 cut(s) 19, 234, 253, 352, 1019
AjuI GAANNNNNNNTTGG 2 cut(s) 1419, 1451
AleI CACNNNNGTG 1 cut(s) 1385
Alw21I GWGCWC 4 cut(s) 156, 625, 991, 1206
Alw26I GTCTC 5 cut(s) 313, 480, 1212, 1387, 1439
Alw44I GTGCAC 1 cut(s) 1202
AlwI GGATC 5 cut(s) 482, 609, 622, 978, 1286
AlwNI CAGNNNCTG 1 cut(s) 1493
Aor13HI TCCGGA 2 cut(s) 617, 1294
AoxI GGCC 1 cut(s) 1187
ApaLI GTGCAC 1 cut(s) 1202
ApeKI GCWGC 4 cut(s) 125, 158, 1049, 1079
ApoI RAATTY 1 cut(s) 55
Asp700I GAANNNNTTC 2 cut(s) 28, 600
AspLEI GCGC 1 cut(s) 791
AspS9I GGNCC 2 cut(s) 241, 878
AsuHPI GGTGA 2 cut(s) 424, 877
AsuNHI GCTAGC 1 cut(s) 1430
AvaII GGWCC 2 cut(s) 241, 878
BaeGI GKGCMC 1 cut(s) 1206
BamHI GGATCC 1 cut(s) 614
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 2 cut(s) 156, 625
BauI CACGAG 2 cut(s) 420, 732
BbsI GAAGAC 2 cut(s) 348, 638
Bbv12I GWGCWC 4 cut(s) 156, 625, 991, 1206
BbvI GCAGC 4 cut(s) 137, 170, 1036, 1066
BccI CCATC 5 cut(s) 707, 735, 972, 1207, 1535
BceAI ACGGC 1 cut(s) 1159
BclI TGATCA 2 cut(s) 289, 1360
BcoDI GTCTC 5 cut(s) 313, 480, 1212, 1387, 1439
BfaI CTAG 3 cut(s) 359, 510, 1431
BfmI CTRYAG 3 cut(s) 853, 927, 1320
BglII AGATCT 1 cut(s) 1308
BisI GCNGC 5 cut(s) 126, 159, 1050, 1080, 1245
BlsI GCNGC 5 cut(s) 127, 160, 1051, 1081, 1246
BmcAI AGTACT 1 cut(s) 330
Bme18I GGWCC 2 cut(s) 241, 878
BmgT120I GGNCC 2 cut(s) 241, 878
BmiI GGNNCC 4 cut(s) 145, 616, 1182, 1519
BmtI GCTAGC 1 cut(s) 1434
BpiI GAAGAC 2 cut(s) 348, 638
BpmI CTGGAG 1 cut(s) 501
Bsa29I ATCGAT 2 cut(s) 1288, 1539
BsaAI YACGTR 1 cut(s) 1207
BsaBI GATNNNNATC 1 cut(s) 1359
BsaHI GRCGYC 1 cut(s) 1484
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 5 cut(s) 139, 905, 1175, 1184, 1435
BsaWI WCCGGW 4 cut(s) 243, 617, 1294, 1574
Bsc4I CCNNNNNNNGG 2 cut(s) 611, 967
Bse1I ACTGG 4 cut(s) 457, 484, 646, 1561
Bse8I GATNNNNATC 1 cut(s) 1359
BseAI TCCGGA 2 cut(s) 617, 1294
BseCI ATCGAT 2 cut(s) 1288, 1539
BseDI CCNNGG 5 cut(s) 139, 905, 1175, 1184, 1435
BseGI GGATG 3 cut(s) 369, 544, 1218
BseJI GATNNNNATC 1 cut(s) 1359
BseLI CCNNNNNNNGG 2 cut(s) 611, 967
BseMII CTCAG 3 cut(s) 261, 638, 1410
BseNI ACTGG 4 cut(s) 457, 484, 646, 1561
BseRI GAGGAG 3 cut(s) 169, 172, 498
BseSI GKGCMC 1 cut(s) 1206
BseXI GCAGC 4 cut(s) 137, 170, 1036, 1066
Bsh1236I CGCG 4 cut(s) 789, 791, 1064, 1244
BshFI GGCC 1 cut(s) 1189
BshNI GGYRCC 1 cut(s) 143
BshVI ATCGAT 2 cut(s) 1288, 1539
BsiHKAI GWGCWC 4 cut(s) 156, 625, 991, 1206
BsiSI CCGG 4 cut(s) 244, 618, 1295, 1575
BsiWI CGTACG 1 cut(s) 1207
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 2 cut(s) 611, 967
BsmAI GTCTC 5 cut(s) 313, 480, 1212, 1387, 1439
BsmBI CGTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 1 cut(s) 1189
Bso31I GGTCTC 1 cut(s) 313
Bsp1286I GDGCHC 4 cut(s) 156, 625, 991, 1206
Bsp13I TCCGGA 2 cut(s) 617, 1294
BspACI CCGC 5 cut(s) 797, 1035, 1062, 1100, 1244
BspANI GGCC 1 cut(s) 1189
BspCNI CTCAG 3 cut(s) 262, 637, 1411
BspDI ATCGAT 2 cut(s) 1288, 1539
BspEI TCCGGA 2 cut(s) 617, 1294
BspFNI CGCG 4 cut(s) 789, 791, 1064, 1244
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 145, 616, 1182, 1519
BspOI GCTAGC 1 cut(s) 1434
BspPI GGATC 5 cut(s) 482, 609, 622, 978, 1286
BspT107I GGYRCC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 313
BsrI ACTGG 4 cut(s) 457, 484, 646, 1561
BssECI CCNNGG 5 cut(s) 139, 905, 1175, 1184, 1435
BssNI GRCGYC 1 cut(s) 1484
BssSI CACGAG 2 cut(s) 420, 732
BssT1I CCWWGG 4 cut(s) 139, 905, 1184, 1435
Bst2BI CACGAG 2 cut(s) 420, 732
Bst4CI ACNGT 2 cut(s) 571, 835
Bst6I CTCTTC 3 cut(s) 122, 768, 1248
BstACI GRCGYC 1 cut(s) 1484
BstBAI YACGTR 1 cut(s) 1207
BstC8I GCNNGC 2 cut(s) 156, 1432
BstDEI CTNAG 6 cut(s) 121, 270, 624, 1196, 1419, 1583
BstDSI CCRYGG 1 cut(s) 1175
BstF5I GGATG 3 cut(s) 369, 544, 1218
BstFNI CGCG 4 cut(s) 789, 791, 1064, 1244
BstHHI GCGC 1 cut(s) 791
BstMAI GTCTC 5 cut(s) 313, 480, 1212, 1387, 1439
BstMWI GCNNNNNNNGC 2 cut(s) 1201, 1490
BstNSI RCATGY 1 cut(s) 1264
BstSFI CTRYAG 3 cut(s) 853, 927, 1320
BstSLI GKGCMC 1 cut(s) 1206
BstUI CGCG 4 cut(s) 789, 791, 1064, 1244
BstV1I GCAGC 4 cut(s) 137, 170, 1036, 1066
BstV2I GAAGAC 2 cut(s) 348, 638
BstX2I RGATCY 2 cut(s) 614, 1308
BstXI CCANNNNNNTGG 1 cut(s) 894
BstYI RGATCY 2 cut(s) 614, 1308
Bsu15I ATCGAT 2 cut(s) 1288, 1539
BsuRI GGCC 1 cut(s) 1189
BsuTUI ATCGAT 2 cut(s) 1288, 1539
BtgI CCRYGG 1 cut(s) 1175
BtsCI GGATG 3 cut(s) 369, 544, 1218
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 3 cut(s) 477, 630, 1002
Cac8I GCNNGC 2 cut(s) 156, 1432
CaiI CAGNNNCTG 1 cut(s) 1493
CciI TCATGA 1 cut(s) 709
CfoI GCGC 1 cut(s) 791
Cfr13I GGNCC 2 cut(s) 241, 878
ClaI ATCGAT 2 cut(s) 1288, 1539
CseI GACGC 1 cut(s) 1473
Csp6I GTAC 6 cut(s) 329, 380, 518, 831, 1208, 1258
CviAII CATG 8 cut(s) 7, 66, 238, 710, 747, 819, 1261, 1570
CviQI GTAC 6 cut(s) 329, 380, 518, 831, 1208, 1258
DdeI CTNAG 6 cut(s) 121, 270, 624, 1196, 1419, 1583
DraIII CACNNNGTG 1 cut(s) 1527
Eam1104I CTCTTC 3 cut(s) 122, 768, 1248
EarI CTCTTC 3 cut(s) 122, 768, 1248
Ecl136II GAGCTC 2 cut(s) 154, 623
Eco130I CCWWGG 4 cut(s) 139, 905, 1184, 1435
Eco24I GRGCYC 2 cut(s) 156, 625
Eco31I GGTCTC 1 cut(s) 313
Eco32I GATATC 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 241, 878
Eco53kI GAGCTC 2 cut(s) 154, 623
EcoICRI GAGCTC 2 cut(s) 154, 623
EcoRV GATATC 1 cut(s) 417
EcoT14I CCWWGG 4 cut(s) 139, 905, 1184, 1435
EcoT22I ATGCAT 1 cut(s) 1266
EcoT38I GRGCYC 2 cut(s) 156, 625
ErhI CCWWGG 4 cut(s) 139, 905, 1184, 1435
Esp3I CGTCTC 1 cut(s) 480
FaeI CATG 8 cut(s) 10, 69, 241, 713, 750, 822, 1264, 1573
FalI AAGNNNNNCTT 4 cut(s) 285, 317, 1419, 1451
FaqI GGGAC 1 cut(s) 332
FatI CATG 8 cut(s) 6, 65, 237, 709, 746, 818, 1260, 1569
FauI CCCGC 1 cut(s) 1093
FauNDI CATATG 1 cut(s) 225
FbaI TGATCA 2 cut(s) 289, 1360
FblI GTMKAC 1 cut(s) 1319
Fnu4HI GCNGC 5 cut(s) 126, 159, 1050, 1080, 1245
FokI GGATG 3 cut(s) 376, 531, 1225
FriOI GRGCYC 2 cut(s) 156, 625
Fsp4HI GCNGC 5 cut(s) 126, 159, 1050, 1080, 1245
FspBI CTAG 3 cut(s) 359, 510, 1431
GlaI GCGC 1 cut(s) 790
GluI GCNGC 5 cut(s) 126, 159, 1050, 1080, 1245
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 1 cut(s) 1189
HapII CCGG 4 cut(s) 244, 618, 1295, 1575
HgaI GACGC 1 cut(s) 1473
HhaI GCGC 1 cut(s) 791
Hin1I GRCGYC 1 cut(s) 1484
Hin1II CATG 8 cut(s) 10, 69, 241, 713, 750, 822, 1264, 1573
Hin6I GCGC 1 cut(s) 789
HinP1I GCGC 1 cut(s) 789
HincII GTYRAC 2 cut(s) 507, 1471
HindII GTYRAC 2 cut(s) 507, 1471
HinfI GANTC 5 cut(s) 88, 99, 535, 1239, 1371
HpaI GTTAAC 2 cut(s) 507, 1471
HpaII CCGG 4 cut(s) 244, 618, 1295, 1575
HphI GGTGA 2 cut(s) 424, 877
Hpy166II GTNNAC 5 cut(s) 507, 1204, 1320, 1342, 1471
Hpy188I TCNGA 7 cut(s) 34, 376, 627, 772, 783, 1278, 1489
Hpy188III TCNNGA 5 cut(s) 349, 420, 618, 710, 1295
Hpy8I GTNNAC 5 cut(s) 507, 1204, 1320, 1342, 1471
Hpy99I CGWCG 1 cut(s) 772
HpyAV CCTTC 3 cut(s) 157, 172, 1324
HpyCH4III ACNGT 2 cut(s) 571, 835
HpyCH4IV ACGT 2 cut(s) 767, 1206
HpyCH4V TGCA 5 cut(s) 686, 720, 1025, 1204, 1264
HpyF10VI GCNNNNNNNGC 2 cut(s) 1201, 1490
HpyF3I CTNAG 6 cut(s) 121, 270, 624, 1196, 1419, 1583
HpySE526I ACGT 2 cut(s) 767, 1206
Hsp92I GRCGYC 1 cut(s) 1484
Hsp92II CATG 8 cut(s) 10, 69, 241, 713, 750, 822, 1264, 1573
HspAI GCGC 1 cut(s) 789
Kpn2I TCCGGA 2 cut(s) 617, 1294
Ksp22I TGATCA 2 cut(s) 289, 1360
KspAI GTTAAC 2 cut(s) 507, 1471
LmnI GCTCC 5 cut(s) 394, 430, 620, 1297, 1508
Lsp1109I GCAGC 4 cut(s) 137, 170, 1036, 1066
MaeI CTAG 3 cut(s) 359, 510, 1431
MaeII ACGT 2 cut(s) 767, 1206
MaeIII GTNAC 1 cut(s) 835
MflI RGATCY 2 cut(s) 614, 1308
MhlI GDGCHC 4 cut(s) 156, 625, 991, 1206
MluCI AATT 5 cut(s) 55, 202, 248, 322, 403
MlyI GAGTC 1 cut(s) 1248
MmeI TCCRAC 3 cut(s) 750, 761, 1486
Mph1103I ATGCAT 1 cut(s) 1266
MroI TCCGGA 2 cut(s) 617, 1294
MroXI GAANNNNTTC 2 cut(s) 28, 600
MseI TTAA 8 cut(s) 44, 506, 947, 1040, 1134, 1302, 1470, 1478
MslI CAYNNNNRTG 3 cut(s) 64, 635, 1385
MspA1I CMGCKG 1 cut(s) 1100
MspI CCGG 4 cut(s) 244, 618, 1295, 1575
MvnI CGCG 4 cut(s) 789, 791, 1064, 1244
MwoI GCNNNNNNNGC 2 cut(s) 1201, 1490
NdeI CATATG 1 cut(s) 225
NheI GCTAGC 1 cut(s) 1430
NlaIII CATG 8 cut(s) 10, 69, 241, 713, 750, 822, 1264, 1573
NlaIV GGNNCC 4 cut(s) 145, 616, 1182, 1519
NmeAIII GCCGAG 1 cut(s) 1108
NsiI ATGCAT 1 cut(s) 1266
NspI RCATGY 1 cut(s) 1264
OliI CACNNNNGTG 1 cut(s) 1385
PagI TCATGA 1 cut(s) 709
PcsI WCGNNNNNNNCGW 2 cut(s) 663, 1388
PdmI GAANNNNTTC 2 cut(s) 28, 600
PfeI GAWTC 4 cut(s) 88, 99, 535, 1371
Pfl23II CGTACG 1 cut(s) 1207
PkrI GCNGC 5 cut(s) 127, 160, 1051, 1081, 1246
PleI GAGTC 1 cut(s) 1247
PpsI GAGTC 1 cut(s) 1247
Ppu21I YACGTR 1 cut(s) 1207
PsiI TTATAA 1 cut(s) 696
Psp124BI GAGCTC 2 cut(s) 156, 625
PspLI CGTACG 1 cut(s) 1207
PspN4I GGNNCC 4 cut(s) 145, 616, 1182, 1519
PspPI GGNCC 2 cut(s) 241, 878
PstNI CAGNNNCTG 1 cut(s) 1493
PsuI RGATCY 2 cut(s) 614, 1308
RsaI GTAC 6 cut(s) 330, 381, 519, 832, 1209, 1259
RsaNI GTAC 6 cut(s) 329, 380, 518, 831, 1208, 1258
RseI CAYNNNNRTG 3 cut(s) 64, 635, 1385
SacI GAGCTC 2 cut(s) 156, 625
SaqAI TTAA 8 cut(s) 44, 506, 947, 1040, 1134, 1302, 1470, 1478
SatI GCNGC 5 cut(s) 126, 159, 1050, 1080, 1245
Sau96I GGNCC 2 cut(s) 241, 878
ScaI AGTACT 1 cut(s) 330
SchI GAGTC 1 cut(s) 1248
SduI GDGCHC 4 cut(s) 156, 625, 991, 1206
SfcI CTRYAG 3 cut(s) 853, 927, 1320
SinI GGWCC 2 cut(s) 241, 878
SmiMI CAYNNNNRTG 3 cut(s) 64, 635, 1385
Sse9I AATT 5 cut(s) 55, 202, 248, 322, 403
SsiI CCGC 5 cut(s) 797, 1035, 1062, 1100, 1244
SspMI CTAG 3 cut(s) 359, 510, 1431
SstI GAGCTC 2 cut(s) 156, 625
StyI CCWWGG 4 cut(s) 139, 905, 1184, 1435
TaaI ACNGT 2 cut(s) 571, 835
TaiI ACGT 2 cut(s) 770, 1209
TaqI TCGA 7 cut(s) 150, 973, 1054, 1163, 1288, 1412, 1539
TasI AATT 5 cut(s) 55, 202, 248, 322, 403
TatI WGTACW 3 cut(s) 328, 517, 1257
TauI GCSGC 1 cut(s) 1247
TfiI GAWTC 4 cut(s) 88, 99, 535, 1371
Tru1I TTAA 8 cut(s) 44, 506, 947, 1040, 1134, 1302, 1470, 1478
Tru9I TTAA 8 cut(s) 44, 506, 947, 1040, 1134, 1302, 1470, 1478
TscAI CASTG 3 cut(s) 484, 637, 1002
TseI GCWGC 4 cut(s) 125, 158, 1049, 1079
TspDTI ATGAA 9 cut(s) 23, 48, 354, 380, 527, 932, 1058, 1343, 1440
TspGWI ACGGA 5 cut(s) 460, 492, 954, 1225, 1397
TspRI CASTG 3 cut(s) 484, 637, 1002
VneI GTGCAC 1 cut(s) 1202
VpaK11BI GGWCC 2 cut(s) 241, 878
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 1264
XmiI GTMKAC 1 cut(s) 1319
XmnI GAANNNNTTC 2 cut(s) 28, 600
XspI CTAG 3 cut(s) 359, 510, 1431
ZrmI AGTACT 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.