AT5G36950

protease

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
14594969 .. 14598395
3427 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36950.1

Sequence Viewer

Length: 1761 bp
ATGCTGCTCCGGTCATTTCGCACCGTCGAGCTTCTCCGCCGAATCTCCACTTCTTCAGTCTCTGGATATCGAACTTCTCCTTCACTTTTACAACGTTGCAATGGCTTCCAAAGCTATTTACCACACAGAGTAACAACAACAGAGAGTCCTTTCCCTTCACACATCTCTCGATTCTGTTCTTCTCAGAGCGCGAATTCGCAAAATGAGAATCGACACACGACTCTATCATCACCGGTTTCTTCACGGAGGGTTAATAACAGAAAGATTTCACGGCGGAGGAAGGCGGGAAAATCATTATCAATCTCGCCGGCGGCGGATGCGGTTGATTTGGCGTTAGACTCAGTGGTGAAGATCTTTACTGTTTCTACAAGTCCTAGTTACTTTCTTCCTTGGCAGAATAAGTCTCAACGAGAATCTATGGGCTCTGGATTTGTGATTTCTGGAAGGAAGATTATAACGAATGCGCATGTCGTGGCTGATCACTCCTTTGTGTTAGTTAGAAAGCATGGATCGTCGATAAAACACAGAGCAGAAGTTCAAGCGGTTGGTCATGAATGTGATTTGGCTATATTGGTAGTTGATAGTGAAGTGTTTTGGGAAGGTATGAATGCTTTGGAGCTAGGAGATATACCGTTTCTTCAGGAAGCTGTGGCTGTAGTTGGCTATCCTCAAGGTGGTGACAACATTTCTGTTACAAAAGGTGTTGTGTCTCGAGTTGAACCGACACAATATGTTCACGGTGCCACCCAGCTAATGGCTATACAAATAGATGCTGCTATTAACCCCGGAAATAGTGGTGGCCCAGCTATCATGGGAAACAAAGTAGCTGGTGTCGCATTTCAAAATCTTTCAGGTGCTGAGAATATAGGCTATATAATTCCAACACCAGTGATAAAGCATTTCATAAATGGCGTTGAAGAATGTGGTAAATACATTGGTTTTTGTTCAATGGGTGTATCATGTCAGCCTATGGAGAATGGTGAACTTCGTAGTGGTTTTCAGATGAGTTCTGAAATGACAGGGGTTCTTGTTAGCAAAATAAACCCTCTATCAGATGCTCACAAAATTTTGAAGAAAGATGATGTTCTTCTTGCATTTGATGGTGTTCCTATAGCAAATGATGGAACAGTTCCTTTTCGGAACAGGGAGAGAATCACTTTCGACCATTTGGTTTCTATGAAGAAACCAGATGAAACAGCCTTGGTTAAAGTTTTGAGAGAGGGGAAAGAACATGAATTCAGTATCACACTAAGACCTCTGCAACCACTAGTTCCAGTGCATCAATTTGATCAGCTTCCCAGTTATTATATATTTGCGGGCTTCGTATTTGTACCTCTTACTCAGCCATACCTTCATGAATATGGAGAAGATTGGTATAACACTTCTCCCCGCACATTGTGCCATCGTGCATTAAAAGATTTGCCCAAAAAAGCCGGTCAACAACTTGTCATTGTCTCTCAGGTGTTAATGGATGATATCAACACAGGATACGAGCGTCTCGCAGAACTACAAGTGAATAAAGTGAACGGAGTAGAAGTGAATAATCTGAGACATCTATGTCAGCTCATAGAGAACTGCAACACCGAAAAGCTGAGGATAGACTTAGACGATGAGAGTAGGGTAATCGTCTTGAACTACCAATCCGCAAAAATTGCCACTTCTTTGATTTTGAAACGACACAGAATAGCATCAGCGATTTCCAGCGATCTGCTTATCGAACAAAATCTAGAAACCGAGTTGGCTTCTTGTTCTGCGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

586

Amino Acids

64.73

Weight (kDa)

8.23

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin PF00089 128 - 300 2.9e-16 Trypsin
Trypsin_2 PF13365 141 - 270 9.3e-20 Trypsin-like peptidase domain
PDZ_2 PF13180 332 - 417 1.4e-06 PDZ domain
PDZ_3 PF17815 424 - 569 3.6e-53 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014559)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AasI GACNNNNNNGTC 1 cut(s) 1557
Acc16I TGCGCA 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 740
AccB7I CCANNNNNTGG 1 cut(s) 754
AccII CGCG 1 cut(s) 191
AclI AACGTT 1 cut(s) 94
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 3 cut(s) 193, 1065, 1235
AcuI CTGAAG 2 cut(s) 39, 623
AdeI CACNNNGTG 1 cut(s) 1398
AfaI GTAC 1 cut(s) 1332
AfiI CCNNNNNNNGG 2 cut(s) 674, 754
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 8 cut(s) 539, 719, 842, 917, 948, 1072, 1633, 1672
AhlI ACTAGT 1 cut(s) 1267
AloI GAACNNNNNNTCC 2 cut(s) 1625, 1657
Alw26I GTCTC 6 cut(s) 64, 408, 714, 1459, 1502, 1543
AlwI GGATC 1 cut(s) 517
AlwNI CAGNNNCTG 2 cut(s) 62, 857
Ama87I CYCGRG 1 cut(s) 711
AoxI GGCC 1 cut(s) 799
ApeKI GCWGC 2 cut(s) 4, 773
ApoI RAATTY 3 cut(s) 193, 1065, 1235
AsiGI ACCGGT 1 cut(s) 232
Asp700I GAANNNNTTC 1 cut(s) 265
AspLEI GCGC 2 cut(s) 191, 466
AspS9I GGNCC 1 cut(s) 800
AsuC2I CCSGG 1 cut(s) 786
AsuHPI GGTGA 4 cut(s) 222, 358, 689, 992
AvaI CYCGRG 1 cut(s) 711
BaeI ACNNNNGTAYC 2 cut(s) 1480, 1513
BanI GGYRCC 1 cut(s) 740
BanII GRGCYC 1 cut(s) 425
BbvCI CCTCAGC 1 cut(s) 1592
BbvI GCAGC 1 cut(s) 760
BccI CCATC 3 cut(s) 1094, 1115, 1410
BceAI ACGGC 1 cut(s) 287
BciVI GTATCC 1 cut(s) 1481
BclI TGATCA 2 cut(s) 478, 1288
BcnI CCSGG 1 cut(s) 786
BcoDI GTCTC 6 cut(s) 64, 408, 714, 1459, 1502, 1543
BcuI ACTAGT 1 cut(s) 1267
BfaI CTAG 4 cut(s) 375, 620, 1268, 1727
BfmI CTRYAG 2 cut(s) 654, 1110
BfuI GTATCC 1 cut(s) 1481
BglII AGATCT 1 cut(s) 351
BisI GCNGC 3 cut(s) 5, 312, 774
BlsI GCNGC 3 cut(s) 6, 313, 775
Bme1390I CCNGG 1 cut(s) 786
BmeT110I CYCGRG 1 cut(s) 711
BmgT120I GGNCC 1 cut(s) 800
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 1 cut(s) 786
BmrI ACTGGG 1 cut(s) 1293
BmsI GCATC 5 cut(s) 307, 760, 1045, 1288, 1697
BmuI ACTGGG 1 cut(s) 1293
Bpu10I CCTNAGC 1 cut(s) 1592
BpuEI CTTGAG 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 786
BsaJI CCNNGG 3 cut(s) 389, 784, 1200
BsaWI WCCGGW 2 cut(s) 9, 232
BsaXI ACNNNNNCTCC 2 cut(s) 1521, 1551
Bsc4I CCNNNNNNNGG 2 cut(s) 674, 754
Bse118I RCCGGY 3 cut(s) 232, 307, 1433
Bse1I ACTGG 3 cut(s) 887, 1274, 1299
Bse3DI GCAATG 1 cut(s) 106
BseDI CCNNGG 3 cut(s) 389, 784, 1200
BseGI GGATG 2 cut(s) 322, 1477
BseLI CCNNNNNNNGG 2 cut(s) 674, 754
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 7 cut(s) 197, 354, 849, 1355, 1472, 1538, 1583
BseNI ACTGG 3 cut(s) 887, 1274, 1299
BseXI GCAGC 1 cut(s) 760
BseYI CCCAGC 2 cut(s) 747, 802
Bsh1236I CGCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 801
BshNI GGYRCC 1 cut(s) 740
BshTI ACCGGT 1 cut(s) 232
BsiHKCI CYCGRG 1 cut(s) 711
BsiSI CCGG 5 cut(s) 10, 233, 308, 786, 1434
BslI CCNNNNNNNGG 2 cut(s) 674, 754
BsmAI GTCTC 6 cut(s) 64, 408, 714, 1459, 1502, 1543
BsmBI CGTCTC 1 cut(s) 1502
BsmI GAATGC 2 cut(s) 466, 613
BsnI GGCC 1 cut(s) 801
BsoBI CYCGRG 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 5 cut(s) 351, 478, 509, 1288, 1705
BspANI GGCC 1 cut(s) 801
BspCNI CTCAG 7 cut(s) 196, 353, 850, 1354, 1471, 1539, 1584
BspFNI CGCG 1 cut(s) 191
BspHI TCATGA 2 cut(s) 550, 1354
BspLI GGNNCC 1 cut(s) 742
BspPI GGATC 1 cut(s) 517
BspT107I GGYRCC 1 cut(s) 740
BsrDI GCAATG 1 cut(s) 106
BsrFI RCCGGY 3 cut(s) 232, 307, 1433
BsrI ACTGG 3 cut(s) 887, 1274, 1299
BssAI RCCGGY 3 cut(s) 232, 307, 1433
BssECI CCNNGG 3 cut(s) 389, 784, 1200
BssMI GATC 5 cut(s) 351, 478, 509, 1288, 1705
BssT1I CCWWGG 2 cut(s) 389, 1200
Bst4CI ACNGT 5 cut(s) 25, 361, 633, 740, 1129
BstAPI GCANNNNNTGC 2 cut(s) 1398, 1652
BstC8I GCNNGC 2 cut(s) 309, 1318
BstDEI CTNAG 9 cut(s) 183, 340, 858, 1250, 1341, 1458, 1547, 1592, 1603
BstF5I GGATG 2 cut(s) 322, 1477
BstFNI CGCG 1 cut(s) 191
BstHHI GCGC 2 cut(s) 191, 466
BstKTI GATC 5 cut(s) 354, 481, 512, 1291, 1708
BstMAI GTCTC 6 cut(s) 64, 408, 714, 1459, 1502, 1543
BstMBI GATC 5 cut(s) 351, 478, 509, 1288, 1705
BstMWI GCNNNNNNNGC 5 cut(s) 111, 317, 833, 1398, 1652
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 784
BstSFI CTRYAG 2 cut(s) 654, 1110
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 760
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BsuI GTATCC 1 cut(s) 1481
BsuRI GGCC 1 cut(s) 801
BtsCI GGATG 2 cut(s) 322, 1477
BtsIMutI CAGTG 3 cut(s) 348, 894, 1281
Cac8I GCNNGC 2 cut(s) 309, 1318
CaiI CAGNNNCTG 2 cut(s) 62, 857
CciI TCATGA 2 cut(s) 550, 1354
CfoI GCGC 2 cut(s) 191, 466
Cfr10I RCCGGY 3 cut(s) 232, 307, 1433
Cfr13I GGNCC 1 cut(s) 800
CseI GACGC 1 cut(s) 1484
Csp6I GTAC 1 cut(s) 1331
CspAI ACCGGT 1 cut(s) 232
CviAII CATG 7 cut(s) 467, 506, 551, 811, 960, 1232, 1355
CviQI GTAC 1 cut(s) 1331
DdeI CTNAG 9 cut(s) 183, 340, 858, 1250, 1341, 1458, 1547, 1592, 1603
DpnI GATC 5 cut(s) 353, 480, 511, 1290, 1707
DpnII GATC 5 cut(s) 351, 478, 509, 1288, 1705
DraIII CACNNNGTG 1 cut(s) 1398
DrdI GACNNNNNNGTC 1 cut(s) 1557
DseDI GACNNNNNNGTC 1 cut(s) 1557
EciI GGCGGA 3 cut(s) 26, 289, 329
Eco130I CCWWGG 2 cut(s) 389, 1200
Eco24I GRGCYC 1 cut(s) 425
Eco32I GATATC 2 cut(s) 68, 1477
Eco57I CTGAAG 2 cut(s) 39, 623
Eco88I CYCGRG 1 cut(s) 711
EcoRI GAATTC 2 cut(s) 193, 1235
EcoRV GATATC 2 cut(s) 68, 1477
EcoT14I CCWWGG 2 cut(s) 389, 1200
EcoT38I GRGCYC 1 cut(s) 425
ErhI CCWWGG 2 cut(s) 389, 1200
Esp3I CGTCTC 1 cut(s) 1502
FaeI CATG 7 cut(s) 470, 509, 554, 814, 963, 1235, 1358
FatI CATG 7 cut(s) 466, 505, 550, 810, 959, 1231, 1354
FauI CCCGC 3 cut(s) 277, 1309, 1397
FbaI TGATCA 2 cut(s) 478, 1288
Fnu4HI GCNGC 3 cut(s) 5, 312, 774
FokI GGATG 2 cut(s) 329, 1484
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 3 cut(s) 5, 312, 774
FspAI RTGCGCAY 1 cut(s) 465
FspBI CTAG 4 cut(s) 375, 620, 1268, 1727
FspI TGCGCA 1 cut(s) 465
GlaI GCGC 2 cut(s) 190, 465
GluI GCNGC 3 cut(s) 5, 312, 774
GsaI CCCAGC 2 cut(s) 751, 806
HaeIII GGCC 1 cut(s) 801
HapII CCGG 5 cut(s) 10, 233, 308, 786, 1434
HgaI GACGC 1 cut(s) 1484
HhaI GCGC 2 cut(s) 191, 466
Hin1II CATG 7 cut(s) 470, 509, 554, 814, 963, 1235, 1358
Hin6I GCGC 2 cut(s) 189, 464
HinP1I GCGC 2 cut(s) 189, 464
HincII GTYRAC 1 cut(s) 1439
HindII GTYRAC 1 cut(s) 1439
HinfI GANTC 8 cut(s) 42, 145, 171, 208, 220, 338, 413, 1152
HpaII CCGG 5 cut(s) 10, 233, 308, 786, 1434
HphI GGTGA 4 cut(s) 222, 358, 689, 992
Hpy166II GTNNAC 4 cut(s) 736, 983, 1439, 1525
Hpy188I TCNGA 6 cut(s) 186, 1002, 1012, 1054, 1140, 1548
Hpy8I GTNNAC 4 cut(s) 736, 983, 1439, 1525
Hpy99I CGWCG 2 cut(s) 29, 517
HpyAV CCTTC 6 cut(s) 90, 165, 274, 438, 593, 1361
HpyCH4III ACNGT 5 cut(s) 25, 361, 633, 740, 1129
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 99, 1094, 1261, 1279, 1409, 1578
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 317, 833, 1398, 1652
HpyF3I CTNAG 9 cut(s) 183, 340, 858, 1250, 1341, 1458, 1547, 1592, 1603
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 7 cut(s) 470, 509, 554, 814, 963, 1235, 1358
HspAI GCGC 2 cut(s) 189, 464
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Ksp22I TGATCA 2 cut(s) 478, 1288
Kzo9I GATC 5 cut(s) 351, 478, 509, 1288, 1705
LmnI GCTCC 2 cut(s) 12, 616
Lsp1109I GCAGC 1 cut(s) 760
LweI GCATC 5 cut(s) 307, 760, 1045, 1288, 1697
MaeI CTAG 4 cut(s) 375, 620, 1268, 1727
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 4 cut(s) 130, 377, 677, 691
MalI GATC 5 cut(s) 353, 480, 511, 1290, 1707
MboI GATC 5 cut(s) 351, 478, 509, 1288, 1705
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 425
MluCI AATT 6 cut(s) 193, 876, 1065, 1235, 1283, 1650
MlyI GAGTC 3 cut(s) 154, 214, 332
MmeI TCCRAC 1 cut(s) 905
MnlI CCTC 8 cut(s) 240, 270, 678, 1056, 1213, 1266, 1344, 1587
MreI CGCCGGCG 1 cut(s) 307
MroNI GCCGGC 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 265
MseI TTAA 5 cut(s) 252, 780, 1206, 1412, 1466
MslI CAYNNNNRTG 2 cut(s) 555, 1359
MspI CCGG 5 cut(s) 10, 233, 308, 786, 1434
MspR9I CCNGG 1 cut(s) 786
Mva1269I GAATGC 2 cut(s) 466, 613
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 5 cut(s) 111, 317, 833, 1398, 1652
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 1 cut(s) 786
NdeII GATC 5 cut(s) 351, 478, 509, 1288, 1705
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 7 cut(s) 470, 509, 554, 814, 963, 1235, 1358
NlaIV GGNNCC 1 cut(s) 742
NmuCI GTSAC 1 cut(s) 677
NsbI TGCGCA 1 cut(s) 465
NspI RCATGY 1 cut(s) 470
PaeR7I CTCGAG 1 cut(s) 711
PagI TCATGA 2 cut(s) 550, 1354
PctI GAATGC 2 cut(s) 466, 613
PdiI GCCGGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 265
PfeI GAWTC 5 cut(s) 42, 171, 208, 413, 1152
PflMI CCANNNNNTGG 1 cut(s) 754
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 3 cut(s) 6, 313, 775
PleI GAGTC 3 cut(s) 153, 214, 332
PpsI GAGTC 3 cut(s) 153, 214, 332
PsiI TTATAA 1 cut(s) 455
Psp1406I AACGTT 1 cut(s) 94
PspFI CCCAGC 2 cut(s) 747, 802
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 1 cut(s) 800
PstNI CAGNNNCTG 2 cut(s) 62, 857
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 1 cut(s) 1332
RsaNI GTAC 1 cut(s) 1331
RseI CAYNNNNRTG 2 cut(s) 555, 1359
SaqAI TTAA 5 cut(s) 252, 780, 1206, 1412, 1466
SatI GCNGC 3 cut(s) 5, 312, 774
Sau3AI GATC 5 cut(s) 351, 478, 509, 1288, 1705
Sau96I GGNCC 1 cut(s) 800
SchI GAGTC 3 cut(s) 154, 214, 332
ScrFI CCNGG 1 cut(s) 786
SduI GDGCHC 1 cut(s) 425
SfaNI GCATC 5 cut(s) 307, 760, 1045, 1288, 1697
SfcI CTRYAG 2 cut(s) 654, 1110
Sfr274I CTCGAG 1 cut(s) 711
SgrAI CRCCGGYG 1 cut(s) 307
SlaI CTCGAG 1 cut(s) 711
SmiMI CAYNNNNRTG 2 cut(s) 555, 1359
SmlI CTYRAG 2 cut(s) 669, 711
SmoI CTYRAG 2 cut(s) 669, 711
SpeI ACTAGT 1 cut(s) 1267
Sse9I AATT 6 cut(s) 193, 876, 1065, 1235, 1283, 1650
SspMI CTAG 4 cut(s) 375, 620, 1268, 1727
StyD4I CCNGG 1 cut(s) 784
StyI CCWWGG 2 cut(s) 389, 1200
TaaI ACNGT 5 cut(s) 25, 361, 633, 740, 1129
TaiI ACGT 1 cut(s) 97
TaqI TCGA 8 cut(s) 27, 70, 169, 211, 515, 712, 1161, 1716
TasI AATT 6 cut(s) 193, 876, 1065, 1235, 1283, 1650
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 5 cut(s) 42, 171, 208, 413, 1152
Tru1I TTAA 5 cut(s) 252, 780, 1206, 1412, 1466
Tru9I TTAA 5 cut(s) 252, 780, 1206, 1412, 1466
TscAI CASTG 3 cut(s) 348, 894, 1281
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 2 cut(s) 4, 773
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 8 cut(s) 567, 620, 892, 1193, 1206, 1248, 1343, 1371
TspGWI ACGGA 2 cut(s) 259, 1542
TspRI CASTG 3 cut(s) 348, 894, 1281
Van91I CCANNNNNTGG 1 cut(s) 754
XapI RAATTY 3 cut(s) 193, 1065, 1235
XbaI TCTAGA 1 cut(s) 1726
XceI RCATGY 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XhoI CTCGAG 1 cut(s) 711
XmnI GAANNNNTTC 1 cut(s) 265
XspI CTAG 4 cut(s) 375, 620, 1268, 1727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.