Rroxscaffold_4G00330340

Protease Do-like 10

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
63969073 .. 63970176
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00330340.1

Sequence Viewer

Length: 1026 bp
ATGGAAATCCCTGTCTTCCATAAACACACTTCTAGCCCTCCTATTCGTGTGCATGGCTTGGCTAACCATGTCCTTTCTCTTCTGGGCTGTTCCTGGAGGCTCAGCATGGGGAAAACACCACTGGAAGAAAAGAGATCACCAAATGACAGAAACGCTCATGTAGTTGCTGATCATACATTTGTTCTAGTAAGAAAGCATGCCTCTCCTACCAAGTATAAAGCGCAAGTTGAAGCTGTTGGTCATGATTGTGATTTAGCCATTTTGAGTGTTGAAACTGAAAAGTTCTGGGAGGAGAATAATGGTTATATAATTCCTGTTCCAGTAATAAAGCATTTTATTGCTGGAGTTGAAGAAAGAGGTAAATATGTTGGATTCTGCTCTCTAGGTTTGTCATGCCAACCTACTGAAAATGTTCAACTCCGGAACCACTTTCAAATGCGTCCTGAAATGACTGGGGTACTAGTGAGCAAAATCAACCCTCTTTCGGATGCCCACAAAGTCTTAAAGAAAGATGATGTTGTTCTTTTCTTTGATGGAGTTCCTGTAGCAAATGATGGAACATTTCACTTCAGGAACAGAGAGCGGATAACATTTGATCATTTGGTGTCCATGAAGAAACCCAATGAAACAGCTGTAGTCAGAGTTTTGAGGGATGGGGAAGAATATGAATTCAGTATCACCCTTCAACCTTTACAACCGTTAGTTCCAGTTCATCAGTTCGATAAACTTCCTAGTTTTTACATCTTTGCTGGTTTGGTCTTTGTTCCGCTCACTCAACCTTACCTTCATGAGTATGGAGAAGATTGGTATAATACTTCACCTCGTAAATTATGCGAAATCGCATTGAGGGAACCACTTAAAAGAGCTGGTGAACAGATTGTCATCCTTTCTCAGGTACTCATGGATGATATCAATGCTGGATATGAAAGTCTTGCAGAGCTGCAGGCTGCATGTTGGGGATCGGAGCTGGATGGCAGAGTGACCACTGAGCTTGGTCATGGTAATTCCAAACCACTTGTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

341

Amino Acids

38.57

Weight (kDa)

6.24

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ_2 PF13180 145 - 228 1.5e-06 PDZ domain
PDZ_3 PF17815 235 - 315 8.9e-30 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014559)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 583, 769
AccIII TCCGGA 1 cut(s) 420
AciI CCGC 2 cut(s) 583, 767
AclWI GGATC 1 cut(s) 967
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 553
AfaI GTAC 2 cut(s) 459, 897
AfiI CCNNNNNNNGG 2 cut(s) 484, 892
AgsI TTSAA 6 cut(s) 230, 272, 350, 416, 434, 686
AhlI ACTAGT 1 cut(s) 460
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 6 cut(s) 233, 632, 866, 940, 967, 991
AluI AGCT 6 cut(s) 233, 632, 866, 940, 967, 991
AlwI GGATC 1 cut(s) 967
Aor13HI TCCGGA 1 cut(s) 420
ApeKI GCWGC 2 cut(s) 940, 947
ApoI RAATTY 1 cut(s) 668
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 223
AsuHPI GGTGA 4 cut(s) 129, 670, 810, 881
BbsI GAAGAC 1 cut(s) 7
BbvI GCAGC 2 cut(s) 927, 934
BccI CCATC 4 cut(s) 527, 548, 647, 965
BciT130I CCWGG 1 cut(s) 94
BclI TGATCA 2 cut(s) 169, 595
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 5 cut(s) 33, 185, 383, 461, 732
BfmI CTRYAG 3 cut(s) 543, 633, 941
BisI GCNGC 2 cut(s) 941, 948
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 2 cut(s) 942, 949
Bme1390I CCNGG 1 cut(s) 94
BmiI GGNNCC 2 cut(s) 425, 852
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 7
BpmI CTGGAG 2 cut(s) 115, 363
Bpu1102I GCTNAGC 1 cut(s) 101
BsaBI GATNNNNATC 1 cut(s) 881
BsaWI WCCGGW 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 484, 892
Bse1I ACTGG 4 cut(s) 126, 320, 457, 707
Bse8I GATNNNNATC 1 cut(s) 881
BseAI TCCGGA 1 cut(s) 420
BseBI CCWGG 1 cut(s) 94
BseGI GGATG 5 cut(s) 493, 658, 882, 910, 976
BseJI GATNNNNATC 1 cut(s) 881
BseLI CCNNNNNNNGG 2 cut(s) 484, 892
BseMII CTCAG 3 cut(s) 115, 905, 978
BseNI ACTGG 4 cut(s) 126, 320, 457, 707
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 2 cut(s) 927, 934
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 2 cut(s) 484, 892
Bsp13I TCCGGA 1 cut(s) 420
Bsp143I GATC 4 cut(s) 134, 169, 595, 959
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 2 cut(s) 583, 767
BspCNI CTCAG 3 cut(s) 114, 904, 979
BspEI TCCGGA 1 cut(s) 420
BspHI TCATGA 2 cut(s) 241, 787
BspLI GGNNCC 2 cut(s) 425, 852
BspMAI CTGCAG 1 cut(s) 945
BspPI GGATC 1 cut(s) 967
BsrBI CCGCTC 2 cut(s) 583, 769
BsrI ACTGG 4 cut(s) 126, 320, 457, 707
BssMI GATC 4 cut(s) 134, 169, 595, 959
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 699
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 198, 945
BstDEI CTNAG 3 cut(s) 101, 891, 987
BstENI CCTNNNNNAGG 1 cut(s) 890
BstF5I GGATG 5 cut(s) 493, 658, 882, 910, 976
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 4 cut(s) 137, 172, 598, 962
BstMBI GATC 4 cut(s) 134, 169, 595, 959
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 2 cut(s) 200, 954
BstSCI CCNGG 1 cut(s) 92
BstSFI CTRYAG 3 cut(s) 543, 633, 941
BstV1I GCAGC 2 cut(s) 927, 934
BstV2I GAAGAC 1 cut(s) 7
BstXI CCANNNNNNTGG 1 cut(s) 1020
BtsCI GGATG 5 cut(s) 493, 658, 882, 910, 976
BtsIMutI CAGTG 2 cut(s) 119, 984
Cac8I GCNNGC 2 cut(s) 198, 945
CciI TCATGA 2 cut(s) 241, 787
CfoI GCGC 1 cut(s) 223
CseI GACGC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 458, 896
CspCI CAANNNNNGTGG 2 cut(s) 973, 1008
CviQI GTAC 2 cut(s) 458, 896
DdeI CTNAG 3 cut(s) 101, 891, 987
DpnI GATC 4 cut(s) 136, 171, 597, 961
DpnII GATC 4 cut(s) 134, 169, 595, 959
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 910
Eco57I CTGAAG 1 cut(s) 553
EcoNI CCTNNNNNAGG 1 cut(s) 890
EcoRI GAATTC 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 92
EcoRV GATATC 1 cut(s) 910
FbaI TGATCA 2 cut(s) 169, 595
Fnu4HI GCNGC 2 cut(s) 941, 948
FokI GGATG 5 cut(s) 500, 665, 869, 917, 983
Fsp4HI GCNGC 2 cut(s) 941, 948
FspBI CTAG 5 cut(s) 33, 185, 383, 461, 732
GlaI GCGC 1 cut(s) 222
GluI GCNGC 2 cut(s) 941, 948
GsuI CTGGAG 2 cut(s) 115, 363
HapII CCGG 1 cut(s) 421
HgaI GACGC 1 cut(s) 428
HhaI GCGC 1 cut(s) 223
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 1 cut(s) 372
HpaII CCGG 1 cut(s) 421
HphI GGTGA 4 cut(s) 129, 670, 810, 881
Hpy166II GTNNAC 1 cut(s) 872
Hpy188I TCNGA 3 cut(s) 487, 641, 964
Hpy188III TCNNGA 5 cut(s) 242, 421, 443, 571, 788
Hpy8I GTNNAC 1 cut(s) 872
HpyAV CCTTC 2 cut(s) 692, 794
HpyCH4III ACNGT 1 cut(s) 699
HpyCH4V TGCA 4 cut(s) 52, 935, 943, 950
HpyF3I CTNAG 3 cut(s) 101, 891, 987
HspAI GCGC 1 cut(s) 221
Kpn2I TCCGGA 1 cut(s) 420
Ksp22I TGATCA 2 cut(s) 169, 595
Kzo9I GATC 4 cut(s) 134, 169, 595, 959
LmnI GCTCC 1 cut(s) 964
Lsp1109I GCAGC 2 cut(s) 927, 934
LweI GCATC 1 cut(s) 478
MaeI CTAG 5 cut(s) 33, 185, 383, 461, 732
MaeIII GTNAC 1 cut(s) 979
MalI GATC 4 cut(s) 136, 171, 597, 961
MbiI CCGCTC 2 cut(s) 583, 769
MboI GATC 4 cut(s) 134, 169, 595, 959
MboII GAAGA 7 cut(s) 7, 71, 137, 362, 625, 671, 812
MluCI AATT 4 cut(s) 309, 668, 827, 1003
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 9 cut(s) 48, 90, 211, 283, 350, 489, 642, 831, 840
MroI TCCGGA 1 cut(s) 420
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 2 cut(s) 503, 858
MslI CAYNNNNRTG 2 cut(s) 246, 792
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 94
MvaI CCWGG 1 cut(s) 94
NdeII GATC 4 cut(s) 134, 169, 595, 959
NlaIV GGNNCC 2 cut(s) 425, 852
NmuCI GTSAC 1 cut(s) 979
NspI RCATGY 2 cut(s) 200, 954
PaeI GCATGC 1 cut(s) 200
PagI TCATGA 2 cut(s) 241, 787
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 92
PkrI GCNGC 2 cut(s) 942, 949
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 425, 852
PstI CTGCAG 1 cut(s) 945
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 2 cut(s) 459, 897
RsaNI GTAC 2 cut(s) 458, 896
RseI CAYNNNNRTG 2 cut(s) 246, 792
SaqAI TTAA 2 cut(s) 503, 858
SatI GCNGC 2 cut(s) 941, 948
Sau3AI GATC 4 cut(s) 134, 169, 595, 959
ScrFI CCNGG 1 cut(s) 94
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 3 cut(s) 543, 633, 941
SmiMI CAYNNNNRTG 2 cut(s) 246, 792
SpeI ACTAGT 1 cut(s) 460
SphI GCATGC 1 cut(s) 200
Sse9I AATT 4 cut(s) 309, 668, 827, 1003
SsiI CCGC 2 cut(s) 583, 767
SspMI CTAG 5 cut(s) 33, 185, 383, 461, 732
StyD4I CCNGG 1 cut(s) 92
TaaI ACNGT 1 cut(s) 699
TaqI TCGA 1 cut(s) 720
TasI AATT 4 cut(s) 309, 668, 827, 1003
TfiI GAWTC 1 cut(s) 372
Tru1I TTAA 2 cut(s) 503, 858
Tru9I TTAA 2 cut(s) 503, 858
TscAI CASTG 2 cut(s) 126, 991
TseFI GTSAC 1 cut(s) 979
TseI GCWGC 2 cut(s) 940, 947
Tsp45I GTSAC 1 cut(s) 979
TspDTI ATGAA 6 cut(s) 626, 639, 681, 701, 776, 939
TspRI CASTG 2 cut(s) 126, 991
XagI CCTNNNNNAGG 1 cut(s) 890
XapI RAATTY 1 cut(s) 668
XceI RCATGY 2 cut(s) 200, 954
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 5 cut(s) 33, 185, 383, 461, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.