AT5G37800

core promoter sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012195
Physical Location & Seq
Forward (+)
15036066 .. 15037884
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37800.1

Sequence Viewer

Length: 924 bp
ATGTCACTCATTAACGAACATTGCAATGAGCGTAATTACATCTCAACCCCAAATTCTTCAGAAGATCTCTCTTCACCACAGAATTGCGGATTAGACGAAGGAGCTTCAGCTTCAAGCAGTAGCACCATAAATTCTGATCATCAAAATAATCAAGGGTTTGTGTTTTACCCTTCCGGGGAAACCATTGAAGATCATAATTCTTTGATGGATTTCAATGCTTCATCATTCTTCACCTTTGATAATCACCGAAGCCTTATCTCTCCCGTGACCAACGGTGGTGCCTTCCCGGTCGTGGACGGGAACATGAGTTACAGCTATGATGGCTGGAGTCATCATCAAGTGGATAGTATTAGCCCTAGAGTCATCAAAACTCCAAATAGCTTTGAAACAACGAGCAGTTTTGGATTGACTTCAAACTCCATGAGTAAACCGGCCACAAACCATGGAAATGGAGACTGGTTATACTCTGGTTCAACTATTGTAAACATCGGTTCAAGGCACGAGTCCACGTCCCCTAAACTGGCTGGCAATAAACGGCCTTTCACGGGAGAGAACACACAACTTTCAAAGAAGCCGAGTAGCGGTACGAATGGAAAGATCAAGCCTAAGGCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCCAAGAACCGAAGAGAAAGGATAAGCGAACGCCTCAAGGTATTGCAAGAACTTGTACCGAATGGTACCAAGGTGGATTTGGTAACTATGCTTGAGAAAGCAATTGGCTATGTAAAGTTTCTTCAAGTACAAGTTAAGGTACTTGCAGCCGATGAGTTTTGGCCGGCACAAGGAGGGAAAGCTCCGGACATTTCTCAAGTTAAAGAAGCTATTGACGCAATCCTCTCATCATCACAACGAGATAGTAACTCAACTAGAGAAACAAGTATAGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

307

Amino Acids

33.33

Weight (kDa)

6.08

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 216 - 257 1.7e-07 Helix-loop-helix DNA-binding domain
bHLH_LHW PF23176 220 - 258 2.2e-06 Transcription factor LHW bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66470 AT5G37800
fragaria_vesca FvH4_1g28930 FvH4_1g28930
malus_domestica MD09G1262000.v1.1 MD17G1257000.v1.1
prunus_persica Prupe.3G159800_v2.0.a1
pyrus_communis pycom09g17630 pycom17g25930
rosa_chinensis RchiOBHm_Chr3g0493491
rosa_laevigata RLG00000022711
rosa_multiflora Rmu_sc0002343.1_g000071
rosa_roxburghii Rroxscaffold_6G00391560
rosa_rugosa Rorug03G0261100.1
rosa_samantha Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700
rosa_wichuraiana Rw3G027280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 710
AccB1I GGYRCC 2 cut(s) 278, 710
AccIII TCCGGA 1 cut(s) 829
AciI CCGC 2 cut(s) 87, 582
AclWI GGATC 1 cut(s) 623
AcoI YGGCCR 2 cut(s) 432, 806
AcsI RAATTY 2 cut(s) 52, 130
AcuI CTGAAG 2 cut(s) 42, 90
AfaI GTAC 5 cut(s) 586, 702, 712, 774, 786
AfiI CCNNNNNNNGG 6 cut(s) 175, 292, 520, 545, 581, 815
AgsI TTSAA 9 cut(s) 114, 188, 214, 386, 414, 474, 495, 567, 770
AjiI CACGTC 1 cut(s) 510
AluBI AGCT 6 cut(s) 104, 110, 315, 381, 827, 854
AluI AGCT 6 cut(s) 104, 110, 315, 381, 827, 854
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 1 cut(s) 623
Aor13HI TCCGGA 1 cut(s) 829
AoxI GGCC 3 cut(s) 432, 536, 806
ApeKI GCWGC 2 cut(s) 644, 791
ApoI RAATTY 2 cut(s) 52, 130
Asp718I GGTACC 1 cut(s) 710
AsuC2I CCSGG 2 cut(s) 175, 287
AsuHPI GGTGA 4 cut(s) 66, 223, 236, 612
AxyI CCTNAGG 1 cut(s) 606
BaeI ACNNNNGTAYC 2 cut(s) 702, 735
BanI GGYRCC 2 cut(s) 278, 710
BarI GAAGNNNNNNTAC 2 cut(s) 750, 782
BauI CACGAG 1 cut(s) 500
BbvI GCAGC 2 cut(s) 656, 803
BccI CCATC 2 cut(s) 199, 314
BceAI ACGGC 1 cut(s) 551
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 2 cut(s) 175, 287
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 3 cut(s) 357, 641, 900
BglII AGATCT 1 cut(s) 64
BisI GCNGC 2 cut(s) 645, 792
BlsI GCNGC 2 cut(s) 646, 793
Bme1390I CCNGG 2 cut(s) 175, 287
BmgBI CACGTC 1 cut(s) 510
BmiI GGNNCC 2 cut(s) 280, 712
BmrFI CCNGG 2 cut(s) 175, 287
BpmI CTGGAG 1 cut(s) 346
BpuEI CTTGAG 3 cut(s) 665, 758, 825
BpuMI CCSGG 2 cut(s) 175, 287
BsaJI CCNNGG 3 cut(s) 174, 442, 714
BsaWI WCCGGW 1 cut(s) 829
Bsc4I CCNNNNNNNGG 6 cut(s) 175, 292, 520, 545, 581, 815
Bse118I RCCGGY 2 cut(s) 430, 808
Bse1I ACTGG 2 cut(s) 461, 525
Bse21I CCTNAGG 1 cut(s) 606
Bse3DI GCAATG 2 cut(s) 19, 31
BseAI TCCGGA 1 cut(s) 829
BseDI CCNNGG 3 cut(s) 174, 442, 714
BseLI CCNNNNNNNGG 6 cut(s) 175, 292, 520, 545, 581, 815
BseMI GCAATG 2 cut(s) 19, 31
BseNI ACTGG 2 cut(s) 461, 525
BseXI GCAGC 2 cut(s) 656, 803
Bsh1285I CGRYCG 1 cut(s) 291
BshFI GGCC 3 cut(s) 434, 538, 808
BshNI GGYRCC 2 cut(s) 278, 710
BsiEI CGRYCG 1 cut(s) 291
BsiSI CCGG 5 cut(s) 174, 287, 431, 809, 830
BslFI GGGAC 1 cut(s) 496
BslI CCNNNNNNNGG 6 cut(s) 175, 292, 520, 545, 581, 815
BsmAI GTCTC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 496
BsnI GGCC 3 cut(s) 434, 538, 808
Bsp13I TCCGGA 1 cut(s) 829
Bsp143I GATC 5 cut(s) 64, 136, 190, 597, 628
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 2 cut(s) 87, 582
BspANI GGCC 3 cut(s) 434, 538, 808
BspEI TCCGGA 1 cut(s) 829
BspLI GGNNCC 2 cut(s) 280, 712
BspPI GGATC 1 cut(s) 623
BspT107I GGYRCC 2 cut(s) 278, 710
BsrDI GCAATG 2 cut(s) 19, 31
BsrFI RCCGGY 2 cut(s) 430, 808
BsrI ACTGG 2 cut(s) 461, 525
BssAI RCCGGY 2 cut(s) 430, 808
BssECI CCNNGG 3 cut(s) 174, 442, 714
BssMI GATC 5 cut(s) 64, 136, 190, 597, 628
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 2 cut(s) 442, 714
Bst2BI CACGAG 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 2 cut(s) 76, 652
BstC8I GCNNGC 2 cut(s) 526, 810
BstDEI CTNAG 1 cut(s) 606
BstDSI CCRYGG 1 cut(s) 442
BstKTI GATC 5 cut(s) 67, 139, 193, 600, 631
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 5 cut(s) 64, 136, 190, 597, 628
BstMCI CGRYCG 1 cut(s) 291
BstMWI GCNNNNNNNGC 2 cut(s) 321, 860
BstSCI CCNGG 2 cut(s) 173, 285
BstV1I GCAGC 2 cut(s) 656, 803
BstX2I RGATCY 2 cut(s) 64, 628
BstXI CCANNNNNNTGG 1 cut(s) 449
BstYI RGATCY 2 cut(s) 64, 628
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 3 cut(s) 434, 538, 808
BtgI CCRYGG 1 cut(s) 442
BtrI CACGTC 1 cut(s) 510
Cac8I GCNNGC 2 cut(s) 526, 810
Cfr10I RCCGGY 2 cut(s) 430, 808
CseI GACGC 1 cut(s) 869
Csp6I GTAC 5 cut(s) 585, 701, 711, 773, 785
CviAII CATG 3 cut(s) 304, 421, 443
CviQI GTAC 5 cut(s) 585, 701, 711, 773, 785
DdeI CTNAG 1 cut(s) 606
DpnI GATC 5 cut(s) 66, 138, 192, 599, 630
DpnII GATC 5 cut(s) 64, 136, 190, 597, 628
EaeI YGGCCR 2 cut(s) 432, 806
Eam1104I CTCTTC 2 cut(s) 76, 652
EarI CTCTTC 2 cut(s) 76, 652
Eco130I CCWWGG 2 cut(s) 442, 714
Eco57I CTGAAG 2 cut(s) 42, 90
Eco81I CCTNAGG 1 cut(s) 606
EcoT14I CCWWGG 2 cut(s) 442, 714
ErhI CCWWGG 2 cut(s) 442, 714
FaeI CATG 3 cut(s) 307, 424, 446
FaqI GGGAC 1 cut(s) 496
FatI CATG 3 cut(s) 303, 420, 442
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 645, 792
Fsp4HI GCNGC 2 cut(s) 645, 792
FspBI CTAG 3 cut(s) 357, 641, 900
GluI GCNGC 2 cut(s) 645, 792
GsuI CTGGAG 1 cut(s) 346
HaeIII GGCC 3 cut(s) 434, 538, 808
HapII CCGG 5 cut(s) 174, 287, 431, 809, 830
HgaI GACGC 1 cut(s) 869
Hin1II CATG 3 cut(s) 307, 424, 446
HinfI GANTC 3 cut(s) 328, 360, 503
HpaII CCGG 5 cut(s) 174, 287, 431, 809, 830
HphI GGTGA 4 cut(s) 66, 223, 236, 612
Hpy166II GTNNAC 4 cut(s) 295, 428, 484, 507
Hpy188I TCNGA 2 cut(s) 61, 136
Hpy188III TCNNGA 1 cut(s) 830
Hpy8I GTNNAC 4 cut(s) 295, 428, 484, 507
HpyAV CCTTC 3 cut(s) 92, 180, 292
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 3 cut(s) 24, 691, 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 321, 860
HpyF3I CTNAG 1 cut(s) 606
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 3 cut(s) 307, 424, 446
Kpn2I TCCGGA 1 cut(s) 829
KpnI GGTACC 1 cut(s) 714
KroI GCCGGC 1 cut(s) 808
KroNI GCCGGC 1 cut(s) 810
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 5 cut(s) 64, 136, 190, 597, 628
LmnI GCTCC 2 cut(s) 101, 832
Lsp1109I GCAGC 2 cut(s) 656, 803
MaeI CTAG 3 cut(s) 357, 641, 900
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 5 cut(s) 3, 265, 308, 727, 890
MalI GATC 5 cut(s) 66, 138, 192, 599, 630
MboI GATC 5 cut(s) 64, 136, 190, 597, 628
MboII GAAGA 7 cut(s) 48, 63, 74, 200, 220, 669, 758
MfeI CAATTG 1 cut(s) 747
MflI RGATCY 2 cut(s) 64, 628
MluCI AATT 6 cut(s) 34, 52, 82, 130, 196, 747
MlyI GAGTC 3 cut(s) 337, 369, 512
MnlI CCTC 3 cut(s) 689, 812, 878
MroI TCCGGA 1 cut(s) 829
MroNI GCCGGC 1 cut(s) 808
MseI TTAA 3 cut(s) 12, 780, 846
MslI CAYNNNNRTG 2 cut(s) 24, 447
MspI CCGG 5 cut(s) 174, 287, 431, 809, 830
MspR9I CCNGG 2 cut(s) 175, 287
MunI CAATTG 1 cut(s) 747
MwoI GCNNNNNNNGC 2 cut(s) 321, 860
NaeI GCCGGC 1 cut(s) 810
NciI CCSGG 2 cut(s) 175, 287
NcoI CCATGG 1 cut(s) 442
NdeII GATC 5 cut(s) 64, 136, 190, 597, 628
NgoMIV GCCGGC 1 cut(s) 808
NlaIII CATG 3 cut(s) 307, 424, 446
NlaIV GGNNCC 2 cut(s) 280, 712
NmeAIII GCCGAG 1 cut(s) 600
NmuCI GTSAC 2 cut(s) 3, 265
PdiI GCCGGC 1 cut(s) 810
PkrI GCNGC 2 cut(s) 646, 793
PleI GAGTC 3 cut(s) 336, 368, 511
PpsI GAGTC 3 cut(s) 336, 368, 511
PspN4I GGNNCC 2 cut(s) 280, 712
PsrI GAACNNNNNNTAC 2 cut(s) 293, 325
PsuI RGATCY 2 cut(s) 64, 628
RsaI GTAC 5 cut(s) 586, 702, 712, 774, 786
RsaNI GTAC 5 cut(s) 585, 701, 711, 773, 785
RseI CAYNNNNRTG 2 cut(s) 24, 447
SaqAI TTAA 3 cut(s) 12, 780, 846
SatI GCNGC 2 cut(s) 645, 792
Sau3AI GATC 5 cut(s) 64, 136, 190, 597, 628
SchI GAGTC 3 cut(s) 337, 369, 512
ScrFI CCNGG 2 cut(s) 175, 287
SmiMI CAYNNNNRTG 2 cut(s) 24, 447
SmlI CTYRAG 3 cut(s) 680, 737, 840
SmoI CTYRAG 3 cut(s) 680, 737, 840
Sse9I AATT 6 cut(s) 34, 52, 82, 130, 196, 747
SsiI CCGC 2 cut(s) 87, 582
SspMI CTAG 3 cut(s) 357, 641, 900
StyD4I CCNGG 2 cut(s) 173, 285
StyI CCWWGG 2 cut(s) 442, 714
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 512
TasI AATT 6 cut(s) 34, 52, 82, 130, 196, 747
TatI WGTACW 1 cut(s) 772
Tru1I TTAA 3 cut(s) 12, 780, 846
Tru9I TTAA 3 cut(s) 12, 780, 846
TseFI GTSAC 2 cut(s) 3, 265
TseI GCWGC 2 cut(s) 644, 791
Tsp45I GTSAC 2 cut(s) 3, 265
TspDTI ATGAA 1 cut(s) 210
XapI RAATTY 2 cut(s) 52, 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XspI CTAG 3 cut(s) 357, 641, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.