Rroxscaffold_6G00391560

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012195
Physical Location & Seq
Reverse (-)
10003801 .. 10005360
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391560.1

Sequence Viewer

Length: 798 bp
ATGGCACTTGCCAAGGATAGGATGCCCCATGATTCACTTCAGCATCAAGTAATTTCTTCAGATCATCATCTTTCTAATAATGGTTTTGTTTTTAGATCAGCAGCTTCCACAACAAGTTGTTATCAAGCTGAAGATGATCATGATCAGGTAGCTGCAGGCCACTCAGTCATCAACTTCAAGAATAATGGCTACAACAGTAGTTTCATCCATGACAACAGTGCGTCTCTGCTTAGTTTTGAGAAAAGCAACAACGGCATTACTCATGACAACGATAGTTACAACTGCATCAGCAGGGTCGACCCAGTTCGCCTGTCCGGTGATTTCAATTGCTTTCAGACAGCTAGCAATAACAGCAGTTCCTTATCAAATCCCTCAAATGAAAGCCATGGATCAGAATTAGGGTTAGCTTATGGGTGGTTGTACTCGGACGCAACTCTAATGGCAGAAAGCTTCCTGAATCGGAAACACAAGTCGAAGCAGCCTTTCAAAAGCGCCCCCATAAGGCAATGCACCAGCGATGTTGTTGCTGCTGCTACTGCTACAACCAAGAAGCCCAAACCTAAGTCTTCAAGTCCCTCAAAGGATCCCCAAAGTATTGCCGCCAAGAATCGGAGAGAGCGCATTAGCGAGCGGCTTAAGATACTCCAGGAACTGGTGCCCAATGGCTGCAAGGTCTTGGCAACCGATGAATTTTGGCCCGTTCAAGGTGGGAAAGCTCCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCCATCCTCTCATCTCAAAGAGACACAAGTTCAAGCTCAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

265

Amino Acids

28.92

Weight (kDa)

7.71

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66470 AT5G37800
fragaria_vesca FvH4_1g28930 FvH4_1g28930
malus_domestica MD09G1262000.v1.1 MD17G1257000.v1.1
prunus_persica Prupe.3G159800_v2.0.a1
pyrus_communis pycom09g17630 pycom17g25930
rosa_chinensis RchiOBHm_Chr3g0493491
rosa_laevigata RLG00000022711
rosa_multiflora Rmu_sc0002343.1_g000071
rosa_roxburghii Rroxscaffold_6G00391560
rosa_rugosa Rorug03G0261100.1
rosa_samantha Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700
rosa_wichuraiana Rw3G027280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 655
AccB7I CCANNNNNTGG 1 cut(s) 652
AccBSI CCGCTC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 297
AciI CCGC 2 cut(s) 600, 631
AclWI GGATC 3 cut(s) 397, 578, 591
AcsI RAATTY 1 cut(s) 689
AcuI CTGAAG 3 cut(s) 23, 42, 150
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 5 cut(s) 18, 501, 609, 652, 704
AflII CTTAAG 1 cut(s) 635
AgsI TTSAA 6 cut(s) 178, 325, 487, 570, 704, 783
AjnI CCWGG 1 cut(s) 645
AluBI AGCT 9 cut(s) 104, 128, 152, 341, 407, 450, 716, 786, 793
AluI AGCT 9 cut(s) 104, 128, 152, 341, 407, 450, 716, 786, 793
Alw26I GTCTC 2 cut(s) 228, 765
AlwI GGATC 3 cut(s) 397, 578, 591
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 2 cut(s) 157, 695
ApeKI GCWGC 6 cut(s) 101, 152, 478, 527, 530, 666
ApoI RAATTY 1 cut(s) 689
AspLEI GCGC 2 cut(s) 494, 621
AspS9I GGNCC 1 cut(s) 696
AsuHPI GGTGA 1 cut(s) 329
AsuNHI GCTAGC 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 660
BamHI GGATCC 1 cut(s) 583
BanI GGYRCC 1 cut(s) 655
BbsI GAAGAC 1 cut(s) 558
BbvI GCAGC 6 cut(s) 113, 139, 490, 514, 517, 653
BccI CCATC 1 cut(s) 761
BceAI ACGGC 1 cut(s) 268
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 1 cut(s) 647
BclI TGATCA 2 cut(s) 136, 142
BcoDI GTCTC 2 cut(s) 228, 765
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 495
BfrI CTTAAG 1 cut(s) 635
BisI GCNGC 8 cut(s) 102, 153, 479, 528, 531, 600, 632, 667
BlsI GCNGC 8 cut(s) 103, 154, 480, 529, 532, 601, 633, 668
Bme1390I CCNGG 1 cut(s) 647
BmgT120I GGNCC 1 cut(s) 696
BmiI GGNNCC 2 cut(s) 585, 657
BmrFI CCNGG 1 cut(s) 647
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 4 cut(s) 12, 52, 294, 739
BmtI GCTAGC 1 cut(s) 345
BmuI ACTGGG 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 558
BpmI CTGGAG 1 cut(s) 629
BpuEI CTTGAG 1 cut(s) 714
BsaBI GATNNNNATC 2 cut(s) 66, 141
BsaJI CCNNGG 2 cut(s) 12, 385
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 501, 609, 652, 704
Bse1I ACTGG 2 cut(s) 302, 657
Bse3DI GCAATG 1 cut(s) 512
Bse8I GATNNNNATC 2 cut(s) 66, 141
BseBI CCWGG 1 cut(s) 647
BseDI CCNNGG 2 cut(s) 12, 385
BseGI GGATG 3 cut(s) 27, 204, 753
BseJI GATNNNNATC 2 cut(s) 66, 141
BseLI CCNNNNNNNGG 5 cut(s) 18, 501, 609, 652, 704
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 302, 657
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 6 cut(s) 113, 139, 490, 514, 517, 653
BshFI GGCC 2 cut(s) 159, 697
BshNI GGYRCC 1 cut(s) 655
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 5 cut(s) 18, 501, 609, 652, 704
BsmAI GTCTC 2 cut(s) 228, 765
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 558
BsnI GGCC 2 cut(s) 159, 697
Bsp1286I GDGCHC 1 cut(s) 660
Bsp143I GATC 6 cut(s) 61, 95, 136, 142, 389, 583
Bsp19I CCATGG 1 cut(s) 385
BspACI CCGC 2 cut(s) 600, 631
BspANI GGCC 2 cut(s) 159, 697
BspCNI CTCAG 1 cut(s) 176
BspHI TCATGA 2 cut(s) 139, 262
BspLI GGNNCC 2 cut(s) 585, 657
BspMAI CTGCAG 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 345
BspPI GGATC 3 cut(s) 397, 578, 591
BspT107I GGYRCC 1 cut(s) 655
BspTI CTTAAG 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 631
BsrDI GCAATG 1 cut(s) 512
BsrI ACTGG 2 cut(s) 302, 657
BssECI CCNNGG 2 cut(s) 12, 385
BssMI GATC 6 cut(s) 61, 95, 136, 142, 389, 583
BssT1I CCWWGG 2 cut(s) 12, 385
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 2 cut(s) 197, 218
BstAFI CTTAAG 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 157, 343, 629
BstDEI CTNAG 3 cut(s) 163, 230, 561
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 3 cut(s) 27, 204, 753
BstH2I RGCGCY 1 cut(s) 495
BstHHI GCGC 2 cut(s) 494, 621
BstKTI GATC 6 cut(s) 64, 98, 139, 145, 392, 586
BstMAI GTCTC 2 cut(s) 228, 765
BstMBI GATC 6 cut(s) 61, 95, 136, 142, 389, 583
BstMWI GCNNNNNNNGC 4 cut(s) 252, 351, 536, 749
BstNI CCWGG 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 645
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 660
BstV1I GCAGC 6 cut(s) 113, 139, 490, 514, 517, 653
BstV2I GAAGAC 1 cut(s) 558
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 2 cut(s) 159, 697
BtgI CCRYGG 1 cut(s) 385
BtgZI GCGATG 1 cut(s) 531
BtsCI GGATG 3 cut(s) 27, 204, 753
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 3 cut(s) 157, 343, 629
CaiI CAGNNNCTG 1 cut(s) 652
CciI TCATGA 2 cut(s) 139, 262
CfoI GCGC 2 cut(s) 494, 621
Cfr13I GGNCC 1 cut(s) 696
CseI GACGC 2 cut(s) 210, 437
Csp6I GTAC 1 cut(s) 421
CviAII CATG 5 cut(s) 29, 140, 209, 263, 386
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 3 cut(s) 163, 230, 561
DpnI GATC 6 cut(s) 63, 97, 138, 144, 391, 585
DpnII GATC 6 cut(s) 61, 95, 136, 142, 389, 583
Eco130I CCWWGG 2 cut(s) 12, 385
Eco57I CTGAAG 3 cut(s) 23, 42, 150
EcoRII CCWGG 1 cut(s) 645
EcoT14I CCWWGG 2 cut(s) 12, 385
ErhI CCWWGG 2 cut(s) 12, 385
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 5 cut(s) 32, 143, 212, 266, 389
FaiI YATR 7 cut(s) 30, 141, 210, 264, 387, 411, 500
FaqI GGGAC 1 cut(s) 558
FatI CATG 5 cut(s) 28, 139, 208, 262, 385
FbaI TGATCA 2 cut(s) 136, 142
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 8 cut(s) 102, 153, 479, 528, 531, 600, 632, 667
FokI GGATG 3 cut(s) 34, 191, 740
Fsp4HI GCNGC 8 cut(s) 102, 153, 479, 528, 531, 600, 632, 667
FspBI CTAG 1 cut(s) 342
GlaI GCGC 2 cut(s) 493, 620
GluI GCNGC 8 cut(s) 102, 153, 479, 528, 531, 600, 632, 667
GsuI CTGGAG 1 cut(s) 629
HaeII RGCGCY 1 cut(s) 495
HaeIII GGCC 2 cut(s) 159, 697
HapII CCGG 1 cut(s) 315
HgaI GACGC 2 cut(s) 210, 437
HhaI GCGC 2 cut(s) 494, 621
Hin1II CATG 5 cut(s) 32, 143, 212, 266, 389
Hin6I GCGC 2 cut(s) 492, 619
HinP1I GCGC 2 cut(s) 492, 619
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 3 cut(s) 32, 457, 607
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 6 cut(s) 61, 336, 394, 427, 462, 612
Hpy188III TCNNGA 5 cut(s) 140, 178, 263, 454, 719
Hpy8I GTNNAC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 197, 218
HpyCH4V TGCA 4 cut(s) 155, 285, 510, 669
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 351, 536, 749
HpyF3I CTNAG 3 cut(s) 163, 230, 561
Hsp92II CATG 5 cut(s) 32, 143, 212, 266, 389
HspAI GCGC 2 cut(s) 492, 619
Ksp22I TGATCA 2 cut(s) 136, 142
Kzo9I GATC 6 cut(s) 61, 95, 136, 142, 389, 583
LmnI GCTCC 1 cut(s) 721
Lsp1109I GCAGC 6 cut(s) 113, 139, 490, 514, 517, 653
LweI GCATC 4 cut(s) 12, 52, 294, 739
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 275
MalI GATC 6 cut(s) 63, 97, 138, 144, 391, 585
MbiI CCGCTC 1 cut(s) 631
MboI GATC 6 cut(s) 61, 95, 136, 142, 389, 583
MboII GAAGA 3 cut(s) 48, 143, 558
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 660
MluCI AATT 4 cut(s) 51, 325, 395, 689
MnlI CCTC 3 cut(s) 382, 586, 767
MseI TTAA 1 cut(s) 636
MspCI CTTAAG 1 cut(s) 635
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 647
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 647
MwoI GCNNNNNNNGC 4 cut(s) 252, 351, 536, 749
NcoI CCATGG 1 cut(s) 385
NdeII GATC 6 cut(s) 61, 95, 136, 142, 389, 583
NheI GCTAGC 1 cut(s) 341
NlaIII CATG 5 cut(s) 32, 143, 212, 266, 389
NlaIV GGNNCC 2 cut(s) 585, 657
PagI TCATGA 2 cut(s) 139, 262
PfeI GAWTC 3 cut(s) 32, 457, 607
PflMI CCANNNNNTGG 1 cut(s) 652
PfoI TCCNGGA 1 cut(s) 645
PkrI GCNGC 8 cut(s) 103, 154, 480, 529, 532, 601, 633, 668
Psp6I CCWGG 1 cut(s) 645
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 2 cut(s) 585, 657
PspPI GGNCC 1 cut(s) 696
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 8 cut(s) 102, 153, 479, 528, 531, 600, 632, 667
Sau3AI GATC 6 cut(s) 61, 95, 136, 142, 389, 583
Sau96I GGNCC 1 cut(s) 696
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 1 cut(s) 660
SfaNI GCATC 4 cut(s) 12, 52, 294, 739
SfcI CTRYAG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 635, 729
SmoI CTYRAG 2 cut(s) 635, 729
Sse9I AATT 4 cut(s) 51, 325, 395, 689
SsiI CCGC 2 cut(s) 600, 631
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 645
StyI CCWWGG 2 cut(s) 12, 385
TaaI ACNGT 2 cut(s) 197, 218
TaqI TCGA 2 cut(s) 297, 473
TasI AATT 4 cut(s) 51, 325, 395, 689
TatI WGTACW 1 cut(s) 420
TauI GCSGC 2 cut(s) 602, 634
TfiI GAWTC 3 cut(s) 32, 457, 607
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 1 cut(s) 223
TseI GCWGC 6 cut(s) 101, 152, 478, 527, 530, 666
TspDTI ATGAA 3 cut(s) 193, 393, 702
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 652
Vha464I CTTAAG 1 cut(s) 635
XapI RAATTY 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 297
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.