Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0012195

Physical Location & Seq

Genomic Coordinates Reverse (-)

33539604 .. 33541274

Gene Structure 1671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1262000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCACTAGCCAAGGACATTAGAATATCTACTCCTCATGACTCATGCACTCATGAGTCCCTTCAAGTTTCAGATCTTTCTGATGGATTTGTGTTTAGAGCCACATCTAATTACCAACCTGATCATCTCATTAACTTCAAAAGTGGGTACTACAACAGTGGTGAATCTTTGCTTAGTTTTGATAAAAACAAGCAGAGTTCTCAAAGCATTTACTTGAATGGTAGTACCAGCAAAGACGACTGCGATAGTGATTTGTATCATGGTAGTTATAGCCAGTGGAATCAGATGGCTGGCATCGGTGACCCACGTCTTTCGGGCGATTTTAGTTGTTTACAGACGGCTAGCAATTACAGCAGCTCCATCCCCAATACCTCAAAAGAAGATCATGGCGATCATGAGGCTTATGCATGGTTACACTCTGAAGCATCTGATAGCTTCCAGGAACCGGACGAGCAAAAAGCGGGGTTTCACAAGCGTCCCATTACGGGAGAGAGCATGCAACCTTCAAAGAAGCAATGCACTGGTTCAACTAAGAAGCCCAAACCCAAGTCATCAACAAGTCCCTCTAAGGACCCCCAAAGTATTGCAGCCAAGAATCGAAGAGAGCGGATTAGCGAGCGGCTTAAGATACTGCTAGAACTGGTGCCCAATGGCTGCAAGGTTGATTTGGTCACCATGTTAGAGAAAGCGATCAATTATGTTAAATTTCTTCAACTACAAGTCAAGGTGTTGGCGACCGATGAATTTTGGCCCGTTCAAGGTGGGAAAGCTCCTGATATTTCTCAAGTGAAAGAAGCCATTGAGGCCATCCTCTCATCATCTCAGAGAGACACAAGCTCAAGCTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

284

Amino Acids

31.31

Weight (kDa)

6.25

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	196 - 238	1.8e-07	Helix-loop-helix DNA-binding domain
bHLH_LHW	PF23176	201 - 238	6.1e-06	Transcription factor LHW bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66470 AT5G37800
fragaria_vesca	FvH4_1g28930 FvH4_1g28930
malus_domestica	MD09G1262000.v1.1 MD17G1257000.v1.1
prunus_persica	Prupe.3G159800_v2.0.a1
pyrus_communis	pycom09g17630 pycom17g25930
rosa_chinensis	RchiOBHm_Chr3g0493491
rosa_laevigata	RLG00000022711
rosa_multiflora	Rmu_sc0002343.1_g000071
rosa_roxburghii	Rroxscaffold_6G00391560
rosa_rugosa	Rorug03G0261100.1
rosa_samantha	Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700
rosa_wichuraiana	Rw3G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccBSI	CCGCTC	2 cut(s)	607, 619
AciI	CCGC	3 cut(s)	461, 607, 619
AcsI	RAATTY	2 cut(s)	704, 743
AcuI	CTGAAG	1 cut(s)	441
AfaI	GTAC	2 cut(s)	149, 226
AfiI	CCNNNNNNNGG	3 cut(s)	445, 485, 758
AflII	CTTAAG	1 cut(s)	623
AgsI	TTSAA	7 cut(s)	65, 139, 217, 507, 528, 713, 758
AjiI	CACGTC	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	5 cut(s)	357, 435, 770, 837, 843
AluI	AGCT	5 cut(s)	357, 435, 770, 837, 843
Alw26I	GTCTC	1 cut(s)	822
AoxI	GGCC	2 cut(s)	749, 804
ApeKI	GCWGC	3 cut(s)	354, 587, 654
ApoI	RAATTY	2 cut(s)	704, 743
AspS9I	GGNCC	2 cut(s)	571, 750
AsuHPI	GGTGA	3 cut(s)	173, 311, 664
AsuNHI	GCTAGC	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	648
BanI	GGYRCC	1 cut(s)	643
BbvI	GCAGC	3 cut(s)	366, 599, 641
BccI	CCATC	4 cut(s)	77, 280, 368, 815
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	440
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	822
BfaI	CTAG	3 cut(s)	8, 342, 635
BfrI	CTTAAG	1 cut(s)	623
BglI	GCCNNNNNGGC	1 cut(s)	803
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	4 cut(s)	355, 588, 620, 655
BlsI	GCNGC	4 cut(s)	356, 589, 621, 656
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	571
BmgBI	CACGTC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	571, 750
BmiI	GGNNCC	3 cut(s)	444, 573, 645
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	2 cut(s)	303, 434
BmtI	GCTAGC	1 cut(s)	345
BoxI	GACNNNNGTC	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	768, 823
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 485, 758
Bse1I	ACTGG	3 cut(s)	274, 526, 645
Bse3DI	GCAATG	1 cut(s)	521
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	360, 807
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	3 cut(s)	445, 485, 758
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	836
BseNI	ACTGG	3 cut(s)	274, 526, 645
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	3 cut(s)	366, 599, 641
Bsh1285I	CGRYCG	1 cut(s)	738
BshFI	GGCC	2 cut(s)	751, 806
BshNI	GGYRCC	1 cut(s)	643
BsiEI	CGRYCG	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	3 cut(s)	43, 462, 546
BslI	CCNNNNNNNGG	3 cut(s)	445, 485, 758
BsmAI	GTCTC	1 cut(s)	822
BsmFI	GGGAC	3 cut(s)	43, 462, 546
BsnI	GGCC	2 cut(s)	751, 806
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	5 cut(s)	73, 121, 382, 391, 690
BspACI	CCGC	3 cut(s)	461, 607, 619
BspANI	GGCC	2 cut(s)	751, 806
BspCNI	CTCAG	1 cut(s)	835
BspHI	TCATGA	3 cut(s)	37, 52, 394
BspLI	GGNNCC	3 cut(s)	444, 573, 645
BspOI	GCTAGC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	643
BspTI	CTTAAG	1 cut(s)	623
BsrBI	CCGCTC	2 cut(s)	607, 619
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	3 cut(s)	274, 526, 645
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	5 cut(s)	73, 121, 382, 391, 690
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	595
BstAFI	CTTAAG	1 cut(s)	623
BstC8I	GCNNGC	4 cut(s)	292, 343, 497, 617
BstDEI	CTNAG	4 cut(s)	173, 531, 567, 822
BstEII	GGTNACC	2 cut(s)	299, 670
BstF5I	GGATG	2 cut(s)	360, 807
BstKTI	GATC	5 cut(s)	76, 124, 385, 394, 693
BstMAI	GTCTC	1 cut(s)	822
BstMBI	GATC	5 cut(s)	73, 121, 382, 391, 690
BstMCI	CGRYCG	1 cut(s)	738
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 803
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	499
BstPAI	GACNNNNGTC	1 cut(s)	306
BstPI	GGTNACC	2 cut(s)	299, 670
BstSCI	CCNGG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	648
BstV1I	GCAGC	3 cut(s)	366, 599, 641
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	751, 806
BtrI	CACGTC	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	360, 807
BtsIMutI	CAGTG	3 cut(s)	163, 281, 519
Cac8I	GCNNGC	4 cut(s)	292, 343, 497, 617
CciI	TCATGA	3 cut(s)	37, 52, 394
Cfr13I	GGNCC	2 cut(s)	571, 750
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	148, 225
CviAII	CATG	9 cut(s)	38, 45, 53, 260, 386, 395, 408, 496, 676
CviQI	GTAC	2 cut(s)	148, 225
DdeI	CTNAG	4 cut(s)	173, 531, 567, 822
DpnI	GATC	5 cut(s)	75, 123, 384, 393, 692
DpnII	GATC	5 cut(s)	73, 121, 382, 391, 690
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	441
Eco91I	GGTNACC	2 cut(s)	299, 670
EcoO109I	RGGNCCY	1 cut(s)	571
EcoO65I	GGTNACC	2 cut(s)	299, 670
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	9 cut(s)	41, 48, 56, 263, 389, 398, 411, 499, 679
FaqI	GGGAC	3 cut(s)	43, 462, 546
FatI	CATG	9 cut(s)	37, 44, 52, 259, 385, 394, 407, 495, 675
FauI	CCCGC	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	355, 588, 620, 655
FokI	GGATG	2 cut(s)	347, 794
Fsp4HI	GCNGC	4 cut(s)	355, 588, 620, 655
FspBI	CTAG	3 cut(s)	8, 342, 635
GluI	GCNGC	4 cut(s)	355, 588, 620, 655
HaeIII	GGCC	2 cut(s)	751, 806
HapII	CCGG	1 cut(s)	446
HgaI	GACGC	1 cut(s)	464
Hin1II	CATG	9 cut(s)	41, 48, 56, 263, 389, 398, 411, 499, 679
HinfI	GANTC	5 cut(s)	41, 56, 164, 280, 595
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	3 cut(s)	173, 311, 664
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	6 cut(s)	73, 82, 285, 421, 430, 825
Hpy188III	TCNNGA	4 cut(s)	38, 53, 395, 773
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	2 cut(s)	71, 513
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	6 cut(s)	48, 407, 499, 519, 587, 657
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 803
HpyF3I	CTNAG	4 cut(s)	173, 531, 567, 822
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	9 cut(s)	41, 48, 56, 263, 389, 398, 411, 499, 679
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	5 cut(s)	73, 121, 382, 391, 690
LmnI	GCTCC	2 cut(s)	362, 775
Lsp1109I	GCAGC	3 cut(s)	366, 599, 641
LweI	GCATC	2 cut(s)	303, 434
MaeI	CTAG	3 cut(s)	8, 342, 635
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	3 cut(s)	299, 411, 670
MalI	GATC	5 cut(s)	75, 123, 384, 393, 692
MbiI	CCGCTC	2 cut(s)	607, 619
MboI	GATC	5 cut(s)	73, 121, 382, 391, 690
MboII	GAAGA	3 cut(s)	392, 612, 701
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	648
MluCI	AATT	5 cut(s)	109, 346, 694, 704, 743
MlyI	GAGTC	2 cut(s)	35, 65
MnlI	CCTC	6 cut(s)	45, 382, 391, 574, 796, 821
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	3 cut(s)	132, 624, 702
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	351, 803
NdeII	GATC	5 cut(s)	73, 121, 382, 391, 690
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	9 cut(s)	41, 48, 56, 263, 389, 398, 411, 499, 679
NlaIV	GGNNCC	3 cut(s)	444, 573, 645
NmuCI	GTSAC	2 cut(s)	299, 670
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	499
PaeI	GCATGC	1 cut(s)	499
PagI	TCATGA	3 cut(s)	37, 52, 394
PfeI	GAWTC	3 cut(s)	164, 280, 595
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	356, 589, 621, 656
PleI	GAGTC	2 cut(s)	35, 64
PpsI	GAGTC	2 cut(s)	35, 64
PpuMI	RGGWCCY	1 cut(s)	571
PshAI	GACNNNNGTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	438
PspEI	GGTNACC	2 cut(s)	299, 670
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	3 cut(s)	444, 573, 645
PspPI	GGNCC	2 cut(s)	571, 750
PspPPI	RGGWCCY	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	2 cut(s)	149, 226
RsaNI	GTAC	2 cut(s)	148, 225
SaqAI	TTAA	3 cut(s)	132, 624, 702
SatI	GCNGC	4 cut(s)	355, 588, 620, 655
Sau3AI	GATC	5 cut(s)	73, 121, 382, 391, 690
Sau96I	GGNCC	2 cut(s)	571, 750
SchI	GAGTC	2 cut(s)	35, 65
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	2 cut(s)	303, 434
SinI	GGWCC	1 cut(s)	571
SmlI	CTYRAG	3 cut(s)	623, 783, 838
SmoI	CTYRAG	3 cut(s)	623, 783, 838
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	5 cut(s)	109, 346, 694, 704, 743
SsiI	CCGC	3 cut(s)	461, 607, 619
SspMI	CTAG	3 cut(s)	8, 342, 635
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	598
TaqII	GACCGA	1 cut(s)	752
TasI	AATT	5 cut(s)	109, 346, 694, 704, 743
TauI	GCSGC	1 cut(s)	622
TfiI	GAWTC	3 cut(s)	164, 280, 595
Tru1I	TTAA	3 cut(s)	132, 624, 702
Tru9I	TTAA	3 cut(s)	132, 624, 702
TscAI	CASTG	3 cut(s)	163, 281, 526
TseFI	GTSAC	2 cut(s)	299, 670
TseI	GCWGC	3 cut(s)	354, 587, 654
Tsp45I	GTSAC	2 cut(s)	299, 670
TspDTI	ATGAA	1 cut(s)	756
TspRI	CASTG	3 cut(s)	163, 281, 526
Vha464I	CTTAAG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	571
XapI	RAATTY	2 cut(s)	704, 743
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	3 cut(s)	8, 342, 635
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.