pycom17g25930

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012195
Physical Location & Seq
Reverse (-)
24264918 .. 24266296
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g25930.1

Sequence Viewer

Length: 828 bp
ATGTCTACTCCTCATGACTCATGCACTCATGATTCCCTTCAAGTTTCAGATCTTTCTAATGGATTTGTGTTTAGAGCCACATCTAGTTACCAACCTGATCAGCTTATTAACTTCAAAAGTGGGTACTACAACAGTGGTGAATCTCTGCTTCGTTTTGATAAAAACAAGCAGAATTCTCAAAGCATTTACTTGAACAGTAGTGCCAGCAAAGATAACTGCGACAGTGATTTGCATCATGGTAGTTACAGCCAGTGGAATCAGATGACTGGCATCGGCGATCATAGCCTTTCGGGGGATTTGAATTGGTTTCAGACGGCTAGCAATTACAGCAGCTCCATCCCCAGCACATCAAAAGAAGACCATGGAGATCATGAGGCTTATGGATGGATATACTCTGAAGCAACTGATAATTTCCAGCAATCAGACGAGCAAGAAGCAGGCTTTCACAAGCCTCCCATTACGGGAGAGAGCCTGCAACCTTCAAAGAAGCAATGCACCAGTGCAACTAAGAAGCCCAAACCCAAGTCATCGACAAGTGCTTCAAAGGACCCCCAAAGTATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGGCTTAAGATGCTGCAAGAACTGGTTCCCAATGGCTGCAAGGTTGATTTGGTGACCATGTTAGAGAAAGCGATCAGTTATGTTAAATTTCTTCAATTGCAAGTCAAGGTGTTGGCGACCGATGAATTTTGGCCGGTTCAAGGTGGGAAAGCTGCTGATATTTCTCAAGTGAAGGAAGCCATTGATGCCATCCTCTCATCTTCTCGGAGAGACACAAGTTCAAGCTCGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

276

Amino Acids

30.48

Weight (kDa)

6.24

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 188 - 230 8.1e-08 Helix-loop-helix DNA-binding domain
bHLH_LHW PF23176 193 - 230 1.7e-06 Transcription factor LHW bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66470 AT5G37800
fragaria_vesca FvH4_1g28930 FvH4_1g28930
malus_domestica MD09G1262000.v1.1 MD17G1257000.v1.1
prunus_persica Prupe.3G159800_v2.0.a1
pyrus_communis pycom09g17630 pycom17g25930
rosa_chinensis RchiOBHm_Chr3g0493491
rosa_laevigata RLG00000022711
rosa_multiflora Rmu_sc0002343.1_g000071
rosa_roxburghii Rroxscaffold_6G00391560
rosa_rugosa Rorug03G0261100.1
rosa_samantha Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700
rosa_wichuraiana Rw3G027280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 595
AcoI YGGCCR 1 cut(s) 725
AcsI RAATTY 3 cut(s) 172, 680, 719
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 3 cut(s) 292, 461, 734
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 9 cut(s) 41, 115, 193, 301, 483, 543, 689, 734, 816
AluBI AGCT 4 cut(s) 103, 333, 746, 819
AluI AGCT 4 cut(s) 103, 333, 746, 819
Alw26I GTCTC 1 cut(s) 798
AoxI GGCC 1 cut(s) 725
ApeKI GCWGC 5 cut(s) 330, 563, 607, 630, 746
ApoI RAATTY 3 cut(s) 172, 680, 719
Asp700I GAANNNNTTC 1 cut(s) 618
AspS9I GGNCC 1 cut(s) 547
AsuHPI GGTGA 2 cut(s) 149, 658
AsuNHI GCTAGC 1 cut(s) 317
AvaII GGWCC 1 cut(s) 547
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 5 cut(s) 342, 575, 594, 617, 733
BccI CCATC 3 cut(s) 344, 378, 791
BceAI ACGGC 1 cut(s) 330
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 798
BfaI CTAG 2 cut(s) 84, 318
BfrI CTTAAG 1 cut(s) 599
BglII AGATCT 1 cut(s) 49
BisI GCNGC 6 cut(s) 331, 564, 596, 608, 631, 747
BlsI GCNGC 6 cut(s) 332, 565, 597, 609, 632, 748
Bme18I GGWCC 1 cut(s) 547
BmgT120I GGNCC 1 cut(s) 547
BmiI GGNNCC 2 cut(s) 549, 621
BmsI GCATC 4 cut(s) 241, 279, 594, 769
BmtI GCTAGC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 744
BsaBI GATNNNNATC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 461, 734
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 4 cut(s) 250, 271, 498, 621
Bse3DI GCAATG 1 cut(s) 497
Bse8I GATNNNNATC 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 3 cut(s) 336, 389, 783
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 3 cut(s) 292, 461, 734
BseMI GCAATG 1 cut(s) 497
BseNI ACTGG 4 cut(s) 250, 271, 498, 621
BseXI GCAGC 5 cut(s) 342, 575, 594, 617, 733
BseYI CCCAGC 1 cut(s) 341
Bsh1285I CGRYCG 1 cut(s) 714
BshFI GGCC 1 cut(s) 727
BsiEI CGRYCG 1 cut(s) 714
BsiSI CCGG 1 cut(s) 728
BslI CCNNNNNNNGG 3 cut(s) 292, 461, 734
BsmAI GTCTC 1 cut(s) 798
BsnI GGCC 1 cut(s) 727
Bsp143I GATC 5 cut(s) 49, 97, 277, 367, 666
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 1 cut(s) 595
BspANI GGCC 1 cut(s) 727
BspHI TCATGA 3 cut(s) 13, 28, 370
BspLI GGNNCC 2 cut(s) 549, 621
BspOI GCTAGC 1 cut(s) 321
BspTI CTTAAG 1 cut(s) 599
BsrBI CCGCTC 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 497
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 4 cut(s) 250, 271, 498, 621
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 5 cut(s) 49, 97, 277, 367, 666
BssT1I CCWWGG 1 cut(s) 361
Bst4CI ACNGT 3 cut(s) 134, 197, 224
BstAFI CTTAAG 1 cut(s) 599
BstC8I GCNNGC 5 cut(s) 205, 319, 439, 473, 593
BstDEI CTNAG 1 cut(s) 507
BstDSI CCRYGG 1 cut(s) 361
BstEII GGTNACC 1 cut(s) 646
BstF5I GGATG 3 cut(s) 336, 389, 783
BstKTI GATC 5 cut(s) 52, 100, 280, 370, 669
BstMAI GTCTC 1 cut(s) 798
BstMBI GATC 5 cut(s) 49, 97, 277, 367, 666
BstMCI CGRYCG 1 cut(s) 714
BstMWI GCNNNNNNNGC 4 cut(s) 282, 327, 604, 779
BstPI GGTNACC 1 cut(s) 646
BstV1I GCAGC 5 cut(s) 342, 575, 594, 617, 733
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 727
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 3 cut(s) 336, 389, 783
BtsIMutI CAGTG 4 cut(s) 139, 229, 257, 505
Cac8I GCNNGC 5 cut(s) 205, 319, 439, 473, 593
CciI TCATGA 3 cut(s) 13, 28, 370
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 1 cut(s) 547
Csp6I GTAC 1 cut(s) 124
CviAII CATG 7 cut(s) 14, 21, 29, 236, 362, 371, 652
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 507
DpnI GATC 5 cut(s) 51, 99, 279, 369, 668
DpnII GATC 5 cut(s) 49, 97, 277, 367, 666
EaeI YGGCCR 1 cut(s) 725
Eco130I CCWWGG 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 547
Eco57I CTGAAG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 646
EcoO109I RGGNCCY 1 cut(s) 547
EcoO65I GGTNACC 1 cut(s) 646
EcoRI GAATTC 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 7 cut(s) 17, 24, 32, 239, 365, 374, 655
FatI CATG 7 cut(s) 13, 20, 28, 235, 361, 370, 651
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 6 cut(s) 331, 564, 596, 608, 631, 747
FokI GGATG 3 cut(s) 323, 396, 770
Fsp4HI GCNGC 6 cut(s) 331, 564, 596, 608, 631, 747
FspBI CTAG 2 cut(s) 84, 318
GluI GCNGC 6 cut(s) 331, 564, 596, 608, 631, 747
GsaI CCCAGC 1 cut(s) 345
HaeIII GGCC 1 cut(s) 727
HapII CCGG 1 cut(s) 728
Hin1II CATG 7 cut(s) 17, 24, 32, 239, 365, 374, 655
HinfI GANTC 5 cut(s) 17, 32, 140, 256, 571
HpaII CCGG 1 cut(s) 728
HphI GGTGA 2 cut(s) 149, 658
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 6 cut(s) 49, 261, 312, 397, 424, 801
Hpy188III TCNNGA 3 cut(s) 14, 29, 371
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 3 cut(s) 47, 489, 760
HpyCH4III ACNGT 3 cut(s) 134, 197, 224
HpyCH4V TGCA 9 cut(s) 24, 232, 475, 495, 503, 563, 610, 633, 694
HpyF10VI GCNNNNNNNGC 4 cut(s) 282, 327, 604, 779
HpyF3I CTNAG 1 cut(s) 507
Hsp92II CATG 7 cut(s) 17, 24, 32, 239, 365, 374, 655
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 5 cut(s) 49, 97, 277, 367, 666
LmnI GCTCC 1 cut(s) 338
Lsp1109I GCAGC 5 cut(s) 342, 575, 594, 617, 733
LweI GCATC 4 cut(s) 241, 279, 594, 769
MaeI CTAG 2 cut(s) 84, 318
MaeIII GTNAC 3 cut(s) 86, 242, 646
MalI GATC 5 cut(s) 51, 99, 279, 369, 668
MbiI CCGCTC 1 cut(s) 595
MboI GATC 5 cut(s) 49, 97, 277, 367, 666
MboII GAAGA 3 cut(s) 368, 677, 786
MfeI CAATTG 1 cut(s) 689
MflI RGATCY 1 cut(s) 49
MluCI AATT 7 cut(s) 172, 301, 322, 409, 680, 689, 719
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 5 cut(s) 21, 367, 462, 576, 797
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 3 cut(s) 108, 600, 678
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 1 cut(s) 728
MunI CAATTG 1 cut(s) 689
MwoI GCNNNNNNNGC 4 cut(s) 282, 327, 604, 779
NcoI CCATGG 1 cut(s) 361
NdeII GATC 5 cut(s) 49, 97, 277, 367, 666
NheI GCTAGC 1 cut(s) 317
NlaIII CATG 7 cut(s) 17, 24, 32, 239, 365, 374, 655
NlaIV GGNNCC 2 cut(s) 549, 621
NmuCI GTSAC 1 cut(s) 646
PagI TCATGA 3 cut(s) 13, 28, 370
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 4 cut(s) 32, 140, 256, 571
PkrI GCNGC 6 cut(s) 332, 565, 597, 609, 632, 748
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PpuMI RGGWCCY 1 cut(s) 547
Psp5II RGGWCCY 1 cut(s) 547
PspEI GGTNACC 1 cut(s) 646
PspFI CCCAGC 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 549, 621
PspPI GGNCC 1 cut(s) 547
PspPPI RGGWCCY 1 cut(s) 547
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 3 cut(s) 108, 600, 678
SatI GCNGC 6 cut(s) 331, 564, 596, 608, 631, 747
Sau3AI GATC 5 cut(s) 49, 97, 277, 367, 666
Sau96I GGNCC 1 cut(s) 547
SchI GAGTC 1 cut(s) 11
SetI ASST 9 cut(s) 97, 105, 335, 481, 639, 705, 739, 748, 821
SfaNI GCATC 4 cut(s) 241, 279, 594, 769
SinI GGWCC 1 cut(s) 547
SmlI CTYRAG 2 cut(s) 599, 759
SmoI CTYRAG 2 cut(s) 599, 759
Sse9I AATT 7 cut(s) 172, 301, 322, 409, 680, 689, 719
SsiI CCGC 1 cut(s) 595
SspMI CTAG 2 cut(s) 84, 318
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 3 cut(s) 134, 197, 224
TaqI TCGA 3 cut(s) 530, 574, 821
TaqII GACCGA 1 cut(s) 728
TasI AATT 7 cut(s) 172, 301, 322, 409, 680, 689, 719
TauI GCSGC 1 cut(s) 598
TfiI GAWTC 4 cut(s) 32, 140, 256, 571
Tru1I TTAA 3 cut(s) 108, 600, 678
Tru9I TTAA 3 cut(s) 108, 600, 678
TscAI CASTG 4 cut(s) 139, 229, 257, 505
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 5 cut(s) 330, 563, 607, 630, 746
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 1 cut(s) 732
TspRI CASTG 4 cut(s) 139, 229, 257, 505
Vha464I CTTAAG 1 cut(s) 599
VpaK11BI GGWCC 1 cut(s) 547
XapI RAATTY 3 cut(s) 172, 680, 719
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 2 cut(s) 84, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.