Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G66470 AT5G37800 |
| fragaria_vesca | FvH4_1g28930 FvH4_1g28930 |
| malus_domestica | MD09G1262000.v1.1 MD17G1257000.v1.1 |
| prunus_persica | Prupe.3G159800_v2.0.a1 |
| pyrus_communis | pycom09g17630 pycom17g25930 |
| rosa_chinensis | RchiOBHm_Chr3g0493491 |
| rosa_laevigata | RLG00000022711 |
| rosa_multiflora | Rmu_sc0002343.1_g000071 |
| rosa_roxburghii | Rroxscaffold_6G00391560 |
| rosa_rugosa | Rorug03G0261100.1 |
| rosa_samantha | Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700 |
| rosa_wichuraiana | Rw3G027280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 682 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 679 |
| AccBSI | CCGCTC | 1 cut(s) | 658 |
| AciI | CCGC | 2 cut(s) | 627, 658 |
| AclWI | GGATC | 4 cut(s) | 302, 397, 605, 618 |
| AcsI | RAATTY | 2 cut(s) | 743, 782 |
| AcuI | CTGAAG | 2 cut(s) | 23, 150 |
| AfaI | GTAC | 1 cut(s) | 422 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 18, 460, 502, 503, 636, 679, 797 |
| AflII | CTTAAG | 1 cut(s) | 662 |
| AgsI | TTSAA | 7 cut(s) | 178, 325, 488, 597, 752, 797, 876 |
| AjnI | CCWGG | 1 cut(s) | 672 |
| AluBI | AGCT | 9 cut(s) | 104, 128, 152, 341, 407, 450, 809, 879, 886 |
| AluI | AGCT | 9 cut(s) | 104, 128, 152, 341, 407, 450, 809, 879, 886 |
| Alw26I | GTCTC | 2 cut(s) | 228, 858 |
| AlwI | GGATC | 4 cut(s) | 302, 397, 605, 618 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 679 |
| AoxI | GGCC | 2 cut(s) | 157, 788 |
| ApeKI | GCWGC | 6 cut(s) | 101, 152, 479, 554, 557, 693 |
| ApoI | RAATTY | 2 cut(s) | 743, 782 |
| AseI | ATTAAT | 1 cut(s) | 732 |
| AspLEI | GCGC | 2 cut(s) | 495, 648 |
| AspS9I | GGNCC | 1 cut(s) | 789 |
| AsuHPI | GGTGA | 1 cut(s) | 329 |
| AsuNHI | GCTAGC | 1 cut(s) | 341 |
| BaeGI | GKGCMC | 1 cut(s) | 687 |
| BamHI | GGATCC | 1 cut(s) | 610 |
| BanI | GGYRCC | 1 cut(s) | 682 |
| BbsI | GAAGAC | 1 cut(s) | 585 |
| BbvI | GCAGC | 6 cut(s) | 113, 139, 491, 541, 544, 680 |
| BccI | CCATC | 1 cut(s) | 854 |
| BceAI | ACGGC | 1 cut(s) | 268 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 533, 567 |
| BciT130I | CCWGG | 1 cut(s) | 674 |
| BclI | TGATCA | 2 cut(s) | 136, 142 |
| BcoDI | GTCTC | 2 cut(s) | 228, 858 |
| BfaI | CTAG | 1 cut(s) | 342 |
| BfmI | CTRYAG | 1 cut(s) | 153 |
| BfoI | RGCGCY | 1 cut(s) | 496 |
| BfrI | CTTAAG | 1 cut(s) | 662 |
| BisI | GCNGC | 8 cut(s) | 102, 153, 480, 555, 558, 627, 659, 694 |
| BlsI | GCNGC | 8 cut(s) | 103, 154, 481, 556, 559, 628, 660, 695 |
| Bme1390I | CCNGG | 1 cut(s) | 674 |
| BmgT120I | GGNCC | 1 cut(s) | 789 |
| BmiI | GGNNCC | 2 cut(s) | 612, 684 |
| BmrFI | CCNGG | 1 cut(s) | 674 |
| BmrI | ACTGGG | 1 cut(s) | 296 |
| BmsI | GCATC | 4 cut(s) | 12, 52, 294, 832 |
| BmtI | GCTAGC | 1 cut(s) | 345 |
| BmuI | ACTGGG | 1 cut(s) | 296 |
| BpiI | GAAGAC | 1 cut(s) | 585 |
| BpmI | CTGGAG | 1 cut(s) | 656 |
| BpuEI | CTTGAG | 1 cut(s) | 807 |
| BsaBI | GATNNNNATC | 1 cut(s) | 141 |
| BsaJI | CCNNGG | 2 cut(s) | 12, 385 |
| BsaWI | WCCGGW | 1 cut(s) | 314 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 18, 460, 502, 503, 636, 679, 797 |
| Bse1I | ACTGG | 2 cut(s) | 302, 684 |
| Bse3DI | GCAATG | 1 cut(s) | 539 |
| Bse8I | GATNNNNATC | 1 cut(s) | 141 |
| BseBI | CCWGG | 1 cut(s) | 674 |
| BseDI | CCNNGG | 2 cut(s) | 12, 385 |
| BseGI | GGATG | 3 cut(s) | 27, 204, 846 |
| BseJI | GATNNNNATC | 1 cut(s) | 141 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 18, 460, 502, 503, 636, 679, 797 |
| BseMI | GCAATG | 1 cut(s) | 539 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseNI | ACTGG | 2 cut(s) | 302, 684 |
| BseSI | GKGCMC | 1 cut(s) | 687 |
| BseXI | GCAGC | 6 cut(s) | 113, 139, 491, 541, 544, 680 |
| BshFI | GGCC | 2 cut(s) | 159, 790 |
| BshNI | GGYRCC | 1 cut(s) | 682 |
| BsiSI | CCGG | 1 cut(s) | 315 |
| BslFI | GGGAC | 1 cut(s) | 585 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 18, 460, 502, 503, 636, 679, 797 |
| BsmAI | GTCTC | 2 cut(s) | 228, 858 |
| BsmBI | CGTCTC | 1 cut(s) | 228 |
| BsmFI | GGGAC | 1 cut(s) | 585 |
| BsnI | GGCC | 2 cut(s) | 159, 790 |
| Bsp1286I | GDGCHC | 1 cut(s) | 687 |
| Bsp143I | GATC | 6 cut(s) | 95, 136, 142, 294, 389, 610 |
| Bsp19I | CCATGG | 1 cut(s) | 385 |
| BspACI | CCGC | 2 cut(s) | 627, 658 |
| BspANI | GGCC | 2 cut(s) | 159, 790 |
| BspCNI | CTCAG | 1 cut(s) | 176 |
| BspHI | TCATGA | 2 cut(s) | 139, 262 |
| BspLI | GGNNCC | 2 cut(s) | 612, 684 |
| BspMAI | CTGCAG | 1 cut(s) | 157 |
| BspOI | GCTAGC | 1 cut(s) | 345 |
| BspPI | GGATC | 4 cut(s) | 302, 397, 605, 618 |
| BspT107I | GGYRCC | 1 cut(s) | 682 |
| BspTI | CTTAAG | 1 cut(s) | 662 |
| BsrBI | CCGCTC | 1 cut(s) | 658 |
| BsrDI | GCAATG | 1 cut(s) | 539 |
| BsrI | ACTGG | 2 cut(s) | 302, 684 |
| BssECI | CCNNGG | 2 cut(s) | 12, 385 |
| BssMI | GATC | 6 cut(s) | 95, 136, 142, 294, 389, 610 |
| BssT1I | CCWWGG | 2 cut(s) | 12, 385 |
| Bst2UI | CCWGG | 1 cut(s) | 674 |
| Bst4CI | ACNGT | 2 cut(s) | 197, 218 |
| BstAFI | CTTAAG | 1 cut(s) | 662 |
| BstC8I | GCNNGC | 3 cut(s) | 157, 343, 656 |
| BstDEI | CTNAG | 3 cut(s) | 163, 230, 588 |
| BstDSI | CCRYGG | 1 cut(s) | 385 |
| BstF5I | GGATG | 3 cut(s) | 27, 204, 846 |
| BstH2I | RGCGCY | 1 cut(s) | 496 |
| BstHHI | GCGC | 2 cut(s) | 495, 648 |
| BstKTI | GATC | 6 cut(s) | 98, 139, 145, 297, 392, 613 |
| BstMAI | GTCTC | 2 cut(s) | 228, 858 |
| BstMBI | GATC | 6 cut(s) | 95, 136, 142, 294, 389, 610 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 252, 351, 563, 842 |
| BstNI | CCWGG | 1 cut(s) | 674 |
| BstNSI | RCATGY | 1 cut(s) | 517 |
| BstSCI | CCNGG | 1 cut(s) | 672 |
| BstSFI | CTRYAG | 1 cut(s) | 153 |
| BstSLI | GKGCMC | 1 cut(s) | 687 |
| BstV1I | GCAGC | 6 cut(s) | 113, 139, 491, 541, 544, 680 |
| BstV2I | GAAGAC | 1 cut(s) | 585 |
| BstX2I | RGATCY | 1 cut(s) | 610 |
| BstYI | RGATCY | 1 cut(s) | 610 |
| BsuRI | GGCC | 2 cut(s) | 159, 790 |
| BtgI | CCRYGG | 1 cut(s) | 385 |
| BtgZI | GCGATG | 1 cut(s) | 558 |
| BtsCI | GGATG | 3 cut(s) | 27, 204, 846 |
| BtsIMutI | CAGTG | 1 cut(s) | 223 |
| Cac8I | GCNNGC | 3 cut(s) | 157, 343, 656 |
| CaiI | CAGNNNCTG | 1 cut(s) | 679 |
| CciI | TCATGA | 2 cut(s) | 139, 262 |
| CfoI | GCGC | 2 cut(s) | 495, 648 |
| Cfr13I | GGNCC | 1 cut(s) | 789 |
| CseI | GACGC | 2 cut(s) | 210, 437 |
| Csp6I | GTAC | 1 cut(s) | 421 |
| CviAII | CATG | 7 cut(s) | 29, 140, 209, 263, 386, 514, 715 |
| CviQI | GTAC | 1 cut(s) | 421 |
| DdeI | CTNAG | 3 cut(s) | 163, 230, 588 |
| DpnI | GATC | 6 cut(s) | 97, 138, 144, 296, 391, 612 |
| DpnII | GATC | 6 cut(s) | 95, 136, 142, 294, 389, 610 |
| DraI | TTTAAA | 1 cut(s) | 525 |
| Eco130I | CCWWGG | 2 cut(s) | 12, 385 |
| Eco57I | CTGAAG | 2 cut(s) | 23, 150 |
| EcoRII | CCWGG | 1 cut(s) | 672 |
| EcoT14I | CCWWGG | 2 cut(s) | 12, 385 |
| ErhI | CCWWGG | 2 cut(s) | 12, 385 |
| Esp3I | CGTCTC | 1 cut(s) | 228 |
| FaeI | CATG | 7 cut(s) | 32, 143, 212, 266, 389, 517, 718 |
| FaqI | GGGAC | 1 cut(s) | 585 |
| FatI | CATG | 7 cut(s) | 28, 139, 208, 262, 385, 513, 714 |
| FbaI | TGATCA | 2 cut(s) | 136, 142 |
| Fnu4HI | GCNGC | 8 cut(s) | 102, 153, 480, 555, 558, 627, 659, 694 |
| FokI | GGATG | 3 cut(s) | 34, 191, 833 |
| Fsp4HI | GCNGC | 8 cut(s) | 102, 153, 480, 555, 558, 627, 659, 694 |
| FspBI | CTAG | 1 cut(s) | 342 |
| GlaI | GCGC | 2 cut(s) | 494, 647 |
| GluI | GCNGC | 8 cut(s) | 102, 153, 480, 555, 558, 627, 659, 694 |
| GsuI | CTGGAG | 1 cut(s) | 656 |
| HaeII | RGCGCY | 1 cut(s) | 496 |
| HaeIII | GGCC | 2 cut(s) | 159, 790 |
| HapII | CCGG | 1 cut(s) | 315 |
| HgaI | GACGC | 2 cut(s) | 210, 437 |
| HhaI | GCGC | 2 cut(s) | 495, 648 |
| Hin1II | CATG | 7 cut(s) | 32, 143, 212, 266, 389, 517, 718 |
| Hin6I | GCGC | 2 cut(s) | 493, 646 |
| HinP1I | GCGC | 2 cut(s) | 493, 646 |
| HindIII | AAGCTT | 1 cut(s) | 448 |
| HinfI | GANTC | 3 cut(s) | 32, 458, 634 |
| HpaII | CCGG | 1 cut(s) | 315 |
| HphI | GGTGA | 1 cut(s) | 329 |
| Hpy188I | TCNGA | 5 cut(s) | 336, 394, 427, 463, 639 |
| Hpy188III | TCNNGA | 3 cut(s) | 140, 263, 812 |
| HpyAV | CCTTC | 1 cut(s) | 758 |
| HpyCH4III | ACNGT | 2 cut(s) | 197, 218 |
| HpyCH4V | TGCA | 6 cut(s) | 155, 285, 517, 537, 696, 757 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 252, 351, 563, 842 |
| HpyF3I | CTNAG | 3 cut(s) | 163, 230, 588 |
| Hsp92II | CATG | 7 cut(s) | 32, 143, 212, 266, 389, 517, 718 |
| HspAI | GCGC | 2 cut(s) | 493, 646 |
| Ksp22I | TGATCA | 2 cut(s) | 136, 142 |
| Kzo9I | GATC | 6 cut(s) | 95, 136, 142, 294, 389, 610 |
| LmnI | GCTCC | 1 cut(s) | 814 |
| Lsp1109I | GCAGC | 6 cut(s) | 113, 139, 491, 541, 544, 680 |
| LweI | GCATC | 4 cut(s) | 12, 52, 294, 832 |
| MaeI | CTAG | 1 cut(s) | 342 |
| MaeIII | GTNAC | 2 cut(s) | 275, 709 |
| MalI | GATC | 6 cut(s) | 97, 138, 144, 296, 391, 612 |
| MbiI | CCGCTC | 1 cut(s) | 658 |
| MboI | GATC | 6 cut(s) | 95, 136, 142, 294, 389, 610 |
| MboII | GAAGA | 3 cut(s) | 48, 143, 585 |
| MfeI | CAATTG | 2 cut(s) | 325, 752 |
| MflI | RGATCY | 1 cut(s) | 610 |
| MhlI | GDGCHC | 1 cut(s) | 687 |
| MluCI | AATT | 7 cut(s) | 51, 325, 395, 733, 743, 752, 782 |
| MnlI | CCTC | 4 cut(s) | 382, 522, 613, 860 |
| MseI | TTAA | 3 cut(s) | 524, 663, 732 |
| MspCI | CTTAAG | 1 cut(s) | 662 |
| MspI | CCGG | 1 cut(s) | 315 |
| MspR9I | CCNGG | 1 cut(s) | 674 |
| MunI | CAATTG | 2 cut(s) | 325, 752 |
| MvaI | CCWGG | 1 cut(s) | 674 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 252, 351, 563, 842 |
| NcoI | CCATGG | 1 cut(s) | 385 |
| NdeII | GATC | 6 cut(s) | 95, 136, 142, 294, 389, 610 |
| NheI | GCTAGC | 1 cut(s) | 341 |
| NlaIII | CATG | 7 cut(s) | 32, 143, 212, 266, 389, 517, 718 |
| NlaIV | GGNNCC | 2 cut(s) | 612, 684 |
| NspI | RCATGY | 1 cut(s) | 517 |
| PagI | TCATGA | 2 cut(s) | 139, 262 |
| PfeI | GAWTC | 3 cut(s) | 32, 458, 634 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 679 |
| PfoI | TCCNGGA | 1 cut(s) | 672 |
| PkrI | GCNGC | 8 cut(s) | 103, 154, 481, 556, 559, 628, 660, 695 |
| PshBI | ATTAAT | 1 cut(s) | 732 |
| Psp6I | CCWGG | 1 cut(s) | 672 |
| PspGI | CCWGG | 1 cut(s) | 672 |
| PspN4I | GGNNCC | 2 cut(s) | 612, 684 |
| PspPI | GGNCC | 1 cut(s) | 789 |
| PstI | CTGCAG | 1 cut(s) | 157 |
| PstNI | CAGNNNCTG | 1 cut(s) | 679 |
| PsuI | RGATCY | 1 cut(s) | 610 |
| RsaI | GTAC | 1 cut(s) | 422 |
| RsaNI | GTAC | 1 cut(s) | 421 |
| SaqAI | TTAA | 3 cut(s) | 524, 663, 732 |
| SatI | GCNGC | 8 cut(s) | 102, 153, 480, 555, 558, 627, 659, 694 |
| Sau3AI | GATC | 6 cut(s) | 95, 136, 142, 294, 389, 610 |
| Sau96I | GGNCC | 1 cut(s) | 789 |
| ScrFI | CCNGG | 1 cut(s) | 674 |
| SduI | GDGCHC | 1 cut(s) | 687 |
| SfaNI | GCATC | 4 cut(s) | 12, 52, 294, 832 |
| SfcI | CTRYAG | 1 cut(s) | 153 |
| SmlI | CTYRAG | 2 cut(s) | 662, 822 |
| SmoI | CTYRAG | 2 cut(s) | 662, 822 |
| Sse9I | AATT | 7 cut(s) | 51, 325, 395, 733, 743, 752, 782 |
| SsiI | CCGC | 2 cut(s) | 627, 658 |
| SspMI | CTAG | 1 cut(s) | 342 |
| StyD4I | CCNGG | 1 cut(s) | 672 |
| StyI | CCWWGG | 2 cut(s) | 12, 385 |
| TaaI | ACNGT | 2 cut(s) | 197, 218 |
| TaqI | TCGA | 2 cut(s) | 297, 474 |
| TasI | AATT | 7 cut(s) | 51, 325, 395, 733, 743, 752, 782 |
| TatI | WGTACW | 1 cut(s) | 420 |
| TauI | GCSGC | 2 cut(s) | 629, 661 |
| TfiI | GAWTC | 3 cut(s) | 32, 458, 634 |
| Tru1I | TTAA | 3 cut(s) | 524, 663, 732 |
| Tru9I | TTAA | 3 cut(s) | 524, 663, 732 |
| TscAI | CASTG | 1 cut(s) | 223 |
| TseI | GCWGC | 6 cut(s) | 101, 152, 479, 554, 557, 693 |
| TspDTI | ATGAA | 4 cut(s) | 48, 193, 393, 795 |
| TspRI | CASTG | 1 cut(s) | 223 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 679 |
| Vha464I | CTTAAG | 1 cut(s) | 662 |
| VspI | ATTAAT | 1 cut(s) | 732 |
| XapI | RAATTY | 2 cut(s) | 743, 782 |
| XceI | RCATGY | 1 cut(s) | 517 |
| XspI | CTAG | 1 cut(s) | 342 |