RLG00000022711

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012195
Physical Location & Seq
Reverse (-)
10317128 .. 10318722
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022711

Sequence Viewer

Length: 861 bp
ATGGCACTTGCCAAGGATAGGATGCCCCATGATTCACTTCAGCATCAAGTAATTTCTTCAGATCATCATCTTTCTAATAATGGTTTTGTTTTTAGATCAGCAGCTTCCACAACAAGTTATCAAGCTGAAGATGATCATGATCAGGTAGCTGCAGGCCACTCAGTCATCAACTTCAAGAATAATGGCTACAACAGTAGTTTCATCCATGCCAACAGTGCGTCTCTGCTTAGTTTTGAGAAAAGCAACAACAGCATTACTCATGACAACGATAGTTACAACTGCATCAGCAGGGTCGACCCAGTTCGCCTGTCCGGTGATTTCAATTGCATTCAGAAAGCTAGCAATTACAGCAGTTCCTTATCCAATCCCTCAAATGAAAGCCATGGATCAGAATTAGGGTCAGCTTATGGGTGGTTGTACTCGGACGCAACTCTAATGGCAGAAAGCTTCCCTGAATCGGAAACACAAGTCGAAGCAGCCTTTCAAAAGCGCCCCCATAAGGGAGAGAACATGCAACCTTTAAAGAGGCAATGCACCAGCGATGTTGTTGCTGCTGCTACTGCTACAACCAAGAAGCCCAAACCTAAGTCTTCAAGTCCCTCAAAGGATCCCCAAAGTATTGCCGCCAAGAATCGGAGAGAGCGCATTAGCGAGCGGCTTAAGATACTCCAGGAACTGGTGCCCAATGGCTGCAAGGTTGATTTAGTAACCATGTTAGAGAAAGCCATTAGTTATGTCTTGGCAACCGATGAATTTTGGCCCGTTCAAGGTGGGAAAGCTCCTGATATTTCTCAAGTAAAAGAAGCCATTGATGCCATTCTCTCATCTCAAAGAGACACAAGTTCAAGCTCAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

287

Amino Acids

31.28

Weight (kDa)

6.36

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 208 - 246 2.9e-06 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66470 AT5G37800
fragaria_vesca FvH4_1g28930 FvH4_1g28930
malus_domestica MD09G1262000.v1.1 MD17G1257000.v1.1
prunus_persica Prupe.3G159800_v2.0.a1
pyrus_communis pycom09g17630 pycom17g25930
rosa_chinensis RchiOBHm_Chr3g0493491
rosa_laevigata RLG00000022711
rosa_multiflora Rmu_sc0002343.1_g000071
rosa_roxburghii Rroxscaffold_6G00391560
rosa_rugosa Rorug03G0261100.1
rosa_samantha Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700
rosa_wichuraiana Rw3G027280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 679
AccB7I CCANNNNNTGG 1 cut(s) 676
AccBSI CCGCTC 1 cut(s) 655
AccI GTMKAC 1 cut(s) 294
AciI CCGC 2 cut(s) 624, 655
AclWI GGATC 3 cut(s) 394, 602, 615
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 3 cut(s) 23, 42, 147
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 7 cut(s) 18, 457, 499, 500, 633, 676, 767
AflII CTTAAG 1 cut(s) 659
AgsI TTSAA 6 cut(s) 175, 322, 485, 594, 767, 846
AjnI CCWGG 1 cut(s) 669
AluBI AGCT 9 cut(s) 104, 125, 149, 338, 404, 447, 779, 849, 856
AluI AGCT 9 cut(s) 104, 125, 149, 338, 404, 447, 779, 849, 856
Alw26I GTCTC 2 cut(s) 225, 828
AlwI GGATC 3 cut(s) 394, 602, 615
AlwNI CAGNNNCTG 1 cut(s) 676
AoxI GGCC 2 cut(s) 154, 758
ApeKI GCWGC 6 cut(s) 101, 149, 476, 551, 554, 690
ApoI RAATTY 1 cut(s) 752
AspLEI GCGC 2 cut(s) 492, 645
AspS9I GGNCC 1 cut(s) 759
AsuHPI GGTGA 1 cut(s) 326
AsuNHI GCTAGC 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 684
BamHI GGATCC 1 cut(s) 607
BanI GGYRCC 1 cut(s) 679
BbsI GAAGAC 1 cut(s) 582
BbvI GCAGC 6 cut(s) 113, 136, 488, 538, 541, 677
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 1 cut(s) 671
BclI TGATCA 2 cut(s) 133, 139
BcoDI GTCTC 2 cut(s) 225, 828
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 493
BfrI CTTAAG 1 cut(s) 659
BisI GCNGC 8 cut(s) 102, 150, 477, 552, 555, 624, 656, 691
BlsI GCNGC 8 cut(s) 103, 151, 478, 553, 556, 625, 657, 692
Bme1390I CCNGG 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 759
BmiI GGNNCC 2 cut(s) 609, 681
BmrFI CCNGG 1 cut(s) 671
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 4 cut(s) 12, 52, 291, 802
BmtI GCTAGC 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 653
BpuEI CTTGAG 1 cut(s) 777
BsaBI GATNNNNATC 2 cut(s) 66, 138
BsaJI CCNNGG 2 cut(s) 12, 382
BsaWI WCCGGW 1 cut(s) 311
Bsc4I CCNNNNNNNGG 7 cut(s) 18, 457, 499, 500, 633, 676, 767
Bse1I ACTGG 2 cut(s) 299, 681
Bse3DI GCAATG 1 cut(s) 536
Bse8I GATNNNNATC 2 cut(s) 66, 138
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 2 cut(s) 12, 382
BseGI GGATG 2 cut(s) 27, 201
BseJI GATNNNNATC 2 cut(s) 66, 138
BseLI CCNNNNNNNGG 7 cut(s) 18, 457, 499, 500, 633, 676, 767
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 299, 681
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 6 cut(s) 113, 136, 488, 538, 541, 677
BshFI GGCC 2 cut(s) 156, 760
BshNI GGYRCC 1 cut(s) 679
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 7 cut(s) 18, 457, 499, 500, 633, 676, 767
BsmAI GTCTC 2 cut(s) 225, 828
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 582
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 2 cut(s) 156, 760
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 6 cut(s) 61, 95, 133, 139, 386, 607
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 2 cut(s) 624, 655
BspANI GGCC 2 cut(s) 156, 760
BspCNI CTCAG 1 cut(s) 173
BspHI TCATGA 2 cut(s) 136, 259
BspLI GGNNCC 2 cut(s) 609, 681
BspMAI CTGCAG 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 342
BspPI GGATC 3 cut(s) 394, 602, 615
BspT107I GGYRCC 1 cut(s) 679
BspTI CTTAAG 1 cut(s) 659
BsrBI CCGCTC 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 536
BsrI ACTGG 2 cut(s) 299, 681
BssECI CCNNGG 2 cut(s) 12, 382
BssMI GATC 6 cut(s) 61, 95, 133, 139, 386, 607
BssT1I CCWWGG 2 cut(s) 12, 382
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 2 cut(s) 194, 215
BstAFI CTTAAG 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 154, 340, 653
BstDEI CTNAG 3 cut(s) 160, 227, 585
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 2 cut(s) 27, 201
BstH2I RGCGCY 1 cut(s) 493
BstHHI GCGC 2 cut(s) 492, 645
BstKTI GATC 6 cut(s) 64, 98, 136, 142, 389, 610
BstMAI GTCTC 2 cut(s) 225, 828
BstMBI GATC 6 cut(s) 61, 95, 133, 139, 386, 607
BstMWI GCNNNNNNNGC 5 cut(s) 215, 249, 348, 560, 812
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 1 cut(s) 514
BstSCI CCNGG 1 cut(s) 669
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 684
BstV1I GCAGC 6 cut(s) 113, 136, 488, 538, 541, 677
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BsuRI GGCC 2 cut(s) 156, 760
BtgI CCRYGG 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 555
BtsCI GGATG 2 cut(s) 27, 201
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 154, 340, 653
CaiI CAGNNNCTG 1 cut(s) 676
CciI TCATGA 2 cut(s) 136, 259
CfoI GCGC 2 cut(s) 492, 645
Cfr13I GGNCC 1 cut(s) 759
CseI GACGC 2 cut(s) 207, 434
Csp6I GTAC 1 cut(s) 418
CviAII CATG 7 cut(s) 29, 137, 206, 260, 383, 511, 712
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 3 cut(s) 160, 227, 585
DpnI GATC 6 cut(s) 63, 97, 135, 141, 388, 609
DpnII GATC 6 cut(s) 61, 95, 133, 139, 386, 607
DraI TTTAAA 1 cut(s) 522
Eco130I CCWWGG 2 cut(s) 12, 382
Eco57I CTGAAG 3 cut(s) 23, 42, 147
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 2 cut(s) 12, 382
ErhI CCWWGG 2 cut(s) 12, 382
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 7 cut(s) 32, 140, 209, 263, 386, 514, 715
FaqI GGGAC 1 cut(s) 582
FatI CATG 7 cut(s) 28, 136, 205, 259, 382, 510, 711
FbaI TGATCA 2 cut(s) 133, 139
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 8 cut(s) 102, 150, 477, 552, 555, 624, 656, 691
FokI GGATG 2 cut(s) 34, 188
Fsp4HI GCNGC 8 cut(s) 102, 150, 477, 552, 555, 624, 656, 691
FspBI CTAG 1 cut(s) 339
GlaI GCGC 2 cut(s) 491, 644
GluI GCNGC 8 cut(s) 102, 150, 477, 552, 555, 624, 656, 691
GsuI CTGGAG 1 cut(s) 653
HaeII RGCGCY 1 cut(s) 493
HaeIII GGCC 2 cut(s) 156, 760
HapII CCGG 1 cut(s) 312
HgaI GACGC 2 cut(s) 207, 434
HhaI GCGC 2 cut(s) 492, 645
Hin1II CATG 7 cut(s) 32, 140, 209, 263, 386, 514, 715
Hin6I GCGC 2 cut(s) 490, 643
HinP1I GCGC 2 cut(s) 490, 643
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 3 cut(s) 32, 455, 631
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 6 cut(s) 61, 333, 391, 424, 460, 636
Hpy188III TCNNGA 4 cut(s) 137, 175, 260, 782
Hpy8I GTNNAC 1 cut(s) 295
HpyCH4III ACNGT 2 cut(s) 194, 215
HpyCH4V TGCA 6 cut(s) 152, 282, 327, 514, 534, 693
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 249, 348, 560, 812
HpyF3I CTNAG 3 cut(s) 160, 227, 585
Hsp92II CATG 7 cut(s) 32, 140, 209, 263, 386, 514, 715
HspAI GCGC 2 cut(s) 490, 643
Ksp22I TGATCA 2 cut(s) 133, 139
Kzo9I GATC 6 cut(s) 61, 95, 133, 139, 386, 607
LmnI GCTCC 1 cut(s) 784
Lsp1109I GCAGC 6 cut(s) 113, 136, 488, 538, 541, 677
LweI GCATC 4 cut(s) 12, 52, 291, 802
MaeI CTAG 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 272, 706
MalI GATC 6 cut(s) 63, 97, 135, 141, 388, 609
MbiI CCGCTC 1 cut(s) 655
MboI GATC 6 cut(s) 61, 95, 133, 139, 386, 607
MboII GAAGA 3 cut(s) 48, 140, 582
MfeI CAATTG 1 cut(s) 322
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 5 cut(s) 51, 322, 343, 392, 752
MnlI CCTC 3 cut(s) 379, 519, 610
MseI TTAA 2 cut(s) 521, 660
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 671
MunI CAATTG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 327
MvaI CCWGG 1 cut(s) 671
MwoI GCNNNNNNNGC 5 cut(s) 215, 249, 348, 560, 812
NcoI CCATGG 1 cut(s) 382
NdeII GATC 6 cut(s) 61, 95, 133, 139, 386, 607
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 7 cut(s) 32, 140, 209, 263, 386, 514, 715
NlaIV GGNNCC 2 cut(s) 609, 681
NspI RCATGY 1 cut(s) 514
PagI TCATGA 2 cut(s) 136, 259
PctI GAATGC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 32, 455, 631
PflMI CCANNNNNTGG 1 cut(s) 676
PfoI TCCNGGA 1 cut(s) 669
PkrI GCNGC 8 cut(s) 103, 151, 478, 553, 556, 625, 657, 692
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 2 cut(s) 609, 681
PspPI GGNCC 1 cut(s) 759
PstI CTGCAG 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 676
PsuI RGATCY 1 cut(s) 607
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 521, 660
SatI GCNGC 8 cut(s) 102, 150, 477, 552, 555, 624, 656, 691
Sau3AI GATC 6 cut(s) 61, 95, 133, 139, 386, 607
Sau96I GGNCC 1 cut(s) 759
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 4 cut(s) 12, 52, 291, 802
SfcI CTRYAG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 659, 792
SmoI CTYRAG 2 cut(s) 659, 792
Sse9I AATT 5 cut(s) 51, 322, 343, 392, 752
SsiI CCGC 2 cut(s) 624, 655
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 2 cut(s) 12, 382
TaaI ACNGT 2 cut(s) 194, 215
TaqI TCGA 2 cut(s) 294, 471
TasI AATT 5 cut(s) 51, 322, 343, 392, 752
TatI WGTACW 1 cut(s) 417
TauI GCSGC 2 cut(s) 626, 658
TfiI GAWTC 3 cut(s) 32, 455, 631
Tru1I TTAA 2 cut(s) 521, 660
Tru9I TTAA 2 cut(s) 521, 660
TscAI CASTG 1 cut(s) 220
TseI GCWGC 6 cut(s) 101, 149, 476, 551, 554, 690
TspDTI ATGAA 3 cut(s) 190, 390, 765
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 676
Vha464I CTTAAG 1 cut(s) 659
XapI RAATTY 1 cut(s) 752
XceI RCATGY 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.