Prupe.3G159800_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012195
Physical Location & Seq
Reverse (-)
17842323 .. 17844019
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G159800.1

Sequence Viewer

Length: 873 bp
ATGGCTCTAGCCAAGGATATGAGAATGCCTCATGACTCATGCACTCATGAGTCTCCTCAAGTTTCATCTGATCTTTCTAATGGTTTTGTGTTTAGGGCCACATCTAATTACCATCAACCTGATCATCAGGTAGCCCACTCAGTCATAAACTTCAAAAATAGTGGGTACAATAGTTTCTTCCAGAACAGTGAATCTTTGCTTAGTTTTGAGAAAAACAGTAAGCAGAACATTTTGAAGACCAGAAATGACAAAGATGAGCACTTCAATTGTGAGGATGATTTGCATCATGGTAATTACCAGTGGAACCACACGGCTAGCGTCAGCGATCCGCGGCTTTCGGGGGATTTCAATTGTTTTCAGACAGCAAGCAATTACAGCTCCATGCCCAACACTTCAGAAGATGACCATGGAGATGAGGCTTATGGGTGGTTATACTCTGAAGCCACTGTAGTTGCAGATGGCTTCCAGGAACCCGAATCACAAGAAGGCTTCCACAAGCGTCCGCATGCGGGAGAGGCCATGCAACCTTTAAAGAAGCAATGCACTAATAGTGGTACTAAGAAGCCCAAACCCAAGTCATCAAGTCCCACAAAGGACCCCCAAAGTATTGCAGCCAAGAATCGTAGAGAGCGGATTAGCGAACGCCTTAAGATACTACAAGAATTGGTGCCGAATGGCTGCAAGGTTGATTTGGTAACCATGCTAGAGAAAGCCATTAGTTATGTCAAGTTTCTTCAATTGCAAGTCAAGGTGTTGGCGACTGATGAATTTTGGCCGGTTCAAGGTGGGAAAGCTCCCGATATTTCTCAAGTGAAGGAAGCCATTGATGCCATCCTCTCATCTCAGAGAGACACTAGTTCAAGCTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

291

Amino Acids

32.55

Weight (kDa)

6.18

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012195)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66470 AT5G37800
fragaria_vesca FvH4_1g28930 FvH4_1g28930
malus_domestica MD09G1262000.v1.1 MD17G1257000.v1.1
prunus_persica Prupe.3G159800_v2.0.a1
pyrus_communis pycom09g17630 pycom17g25930
rosa_chinensis RchiOBHm_Chr3g0493491
rosa_laevigata RLG00000022711
rosa_multiflora Rmu_sc0002343.1_g000071
rosa_roxburghii Rroxscaffold_6G00391560
rosa_rugosa Rorug03G0261100.1
rosa_samantha Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700
rosa_wichuraiana Rw3G027280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 667
AccBSI CCGCTC 1 cut(s) 631
AccII CGCG 1 cut(s) 331
AciI CCGC 5 cut(s) 329, 331, 503, 509, 631
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 773
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 2 cut(s) 378, 459
AfaI GTAC 2 cut(s) 167, 556
AfiI CCNNNNNNNGG 2 cut(s) 509, 782
AflII CTTAAG 1 cut(s) 647
AgsI TTSAA 7 cut(s) 154, 235, 265, 349, 737, 782, 861
AhlI ACTAGT 1 cut(s) 854
AjnI CCWGG 1 cut(s) 465
AluBI AGCT 3 cut(s) 378, 794, 864
AluI AGCT 3 cut(s) 378, 794, 864
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 2 cut(s) 57, 843
AlwI GGATC 1 cut(s) 320
AoxI GGCC 3 cut(s) 96, 516, 773
ApeKI GCWGC 2 cut(s) 611, 678
ApoI RAATTY 1 cut(s) 767
AspS9I GGNCC 2 cut(s) 96, 595
AsuNHI GCTAGC 1 cut(s) 314
AvaII GGWCC 1 cut(s) 595
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BanI GGYRCC 1 cut(s) 667
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 623, 665
BccI CCATC 3 cut(s) 120, 452, 839
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 467
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 57, 843
BcuI ACTAGT 1 cut(s) 854
BfaI CTAG 4 cut(s) 8, 315, 704, 855
BfmI CTRYAG 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 647
BisI GCNGC 3 cut(s) 332, 612, 679
BlsI GCNGC 3 cut(s) 333, 613, 680
Bme1390I CCNGG 1 cut(s) 467
Bme18I GGWCC 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 96, 595
BmiI GGNNCC 4 cut(s) 305, 471, 597, 669
BmrFI CCNGG 1 cut(s) 467
BmsI GCATC 2 cut(s) 292, 817
BmtI GCTAGC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpuEI CTTGAG 2 cut(s) 42, 792
BsaBI GATNNNNATC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 12, 329, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 782
Bse118I RCCGGY 1 cut(s) 775
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 545
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 1 cut(s) 467
BseDI CCNNGG 3 cut(s) 12, 329, 406
BseGI GGATG 2 cut(s) 280, 831
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 509, 782
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 2 cut(s) 153, 857
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 623, 665
Bsh1236I CGCG 1 cut(s) 331
BshFI GGCC 3 cut(s) 98, 518, 775
BshNI GGYRCC 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 1 cut(s) 776
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 2 cut(s) 509, 782
BsmAI GTCTC 2 cut(s) 57, 843
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 3 cut(s) 98, 518, 775
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 3 cut(s) 70, 121, 325
Bsp19I CCATGG 1 cut(s) 406
BspACI CCGC 5 cut(s) 329, 331, 503, 509, 631
BspANI GGCC 3 cut(s) 98, 518, 775
BspCNI CTCAG 2 cut(s) 152, 856
BspFNI CGCG 1 cut(s) 331
BspHI TCATGA 2 cut(s) 31, 46
BspLI GGNNCC 4 cut(s) 305, 471, 597, 669
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 667
BspTI CTTAAG 1 cut(s) 647
BsrBI CCGCTC 1 cut(s) 631
BsrDI GCAATG 1 cut(s) 545
BsrFI RCCGGY 1 cut(s) 775
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 775
BssECI CCNNGG 3 cut(s) 12, 329, 406
BssMI GATC 3 cut(s) 70, 121, 325
BssT1I CCWWGG 2 cut(s) 12, 406
Bst2UI CCWGG 1 cut(s) 467
Bst4CI ACNGT 3 cut(s) 188, 218, 448
BstAFI CTTAAG 1 cut(s) 647
BstC8I GCNNGC 3 cut(s) 316, 367, 507
BstDEI CTNAG 4 cut(s) 139, 200, 558, 843
BstDSI CCRYGG 2 cut(s) 329, 406
BstEII GGTNACC 1 cut(s) 694
BstF5I GGATG 2 cut(s) 280, 831
BstFNI CGCG 1 cut(s) 331
BstKTI GATC 3 cut(s) 73, 124, 328
BstMAI GTCTC 2 cut(s) 57, 843
BstMBI GATC 3 cut(s) 70, 121, 325
BstMWI GCNNNNNNNGC 3 cut(s) 375, 515, 827
BstNI CCWGG 1 cut(s) 467
BstNSI RCATGY 1 cut(s) 509
BstPI GGTNACC 1 cut(s) 694
BstSCI CCNGG 1 cut(s) 465
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 623, 665
BstV2I GAAGAC 1 cut(s) 242
BsuRI GGCC 3 cut(s) 98, 518, 775
BtgI CCRYGG 2 cut(s) 329, 406
BtsCI GGATG 2 cut(s) 280, 831
BtsIMutI CAGTG 3 cut(s) 193, 305, 444
Cac8I GCNNGC 3 cut(s) 316, 367, 507
CciI TCATGA 2 cut(s) 31, 46
Cfr10I RCCGGY 1 cut(s) 775
Cfr13I GGNCC 2 cut(s) 96, 595
Cfr42I CCGCGG 1 cut(s) 332
CseI GACGC 2 cut(s) 307, 488
Csp6I GTAC 2 cut(s) 166, 555
CspCI CAANNNNNGTGG 4 cut(s) 142, 177, 433, 468
CviAII CATG 9 cut(s) 32, 39, 47, 287, 382, 407, 506, 520, 700
CviQI GTAC 2 cut(s) 166, 555
DdeI CTNAG 4 cut(s) 139, 200, 558, 843
DpnI GATC 3 cut(s) 72, 123, 327
DpnII GATC 3 cut(s) 70, 121, 325
DraI TTTAAA 1 cut(s) 531
EaeI YGGCCR 1 cut(s) 773
Eco130I CCWWGG 2 cut(s) 12, 406
Eco47I GGWCC 1 cut(s) 595
Eco57I CTGAAG 2 cut(s) 378, 459
Eco91I GGTNACC 1 cut(s) 694
EcoO109I RGGNCCY 1 cut(s) 595
EcoO65I GGTNACC 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 12, 406
ErhI CCWWGG 2 cut(s) 12, 406
FaeI CATG 9 cut(s) 35, 42, 50, 290, 385, 410, 509, 523, 703
FaqI GGGAC 1 cut(s) 570
FatI CATG 9 cut(s) 31, 38, 46, 286, 381, 406, 505, 519, 699
FauI CCCGC 1 cut(s) 502
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 3 cut(s) 332, 612, 679
FokI GGATG 2 cut(s) 287, 818
Fsp4HI GCNGC 3 cut(s) 332, 612, 679
FspBI CTAG 4 cut(s) 8, 315, 704, 855
GluI GCNGC 3 cut(s) 332, 612, 679
HaeIII GGCC 3 cut(s) 98, 518, 775
HapII CCGG 1 cut(s) 776
HgaI GACGC 2 cut(s) 307, 488
Hin1II CATG 9 cut(s) 35, 42, 50, 290, 385, 410, 509, 523, 703
HinfI GANTC 5 cut(s) 35, 50, 191, 476, 619
HpaII CCGG 1 cut(s) 776
Hpy188I TCNGA 5 cut(s) 70, 360, 397, 439, 846
Hpy188III TCNNGA 4 cut(s) 32, 47, 181, 797
HpyAV CCTTC 2 cut(s) 479, 808
HpyCH4III ACNGT 3 cut(s) 188, 218, 448
HpyCH4V TGCA 8 cut(s) 42, 283, 455, 523, 543, 611, 681, 742
HpyF10VI GCNNNNNNNGC 3 cut(s) 375, 515, 827
HpyF3I CTNAG 4 cut(s) 139, 200, 558, 843
Hsp92II CATG 9 cut(s) 35, 42, 50, 290, 385, 410, 509, 523, 703
Ksp22I TGATCA 1 cut(s) 121
KspI CCGCGG 1 cut(s) 332
Kzo9I GATC 3 cut(s) 70, 121, 325
LmnI GCTCC 2 cut(s) 383, 799
LpnPI CCDG 8 cut(s) 113, 132, 194, 253, 311, 452, 479, 789
Lsp1109I GCAGC 2 cut(s) 623, 665
LweI GCATC 2 cut(s) 292, 817
MaeI CTAG 4 cut(s) 8, 315, 704, 855
MaeIII GTNAC 1 cut(s) 694
MalI GATC 3 cut(s) 72, 123, 327
MbiI CCGCTC 1 cut(s) 631
MboI GATC 3 cut(s) 70, 121, 325
MboII GAAGA 4 cut(s) 169, 247, 410, 725
MfeI CAATTG 3 cut(s) 265, 349, 737
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 8 cut(s) 106, 265, 292, 349, 370, 662, 737, 767
MlyI GAGTC 2 cut(s) 29, 59
MnlI CCTC 6 cut(s) 39, 66, 265, 409, 508, 845
MseI TTAA 2 cut(s) 530, 648
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 331
MspCI CTTAAG 1 cut(s) 647
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 1 cut(s) 467
MunI CAATTG 3 cut(s) 265, 349, 737
Mva1269I GAATGC 1 cut(s) 30
MvaI CCWGG 1 cut(s) 467
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 3 cut(s) 375, 515, 827
NcoI CCATGG 1 cut(s) 406
NdeII GATC 3 cut(s) 70, 121, 325
NheI GCTAGC 1 cut(s) 314
NlaIII CATG 9 cut(s) 35, 42, 50, 290, 385, 410, 509, 523, 703
NlaIV GGNNCC 4 cut(s) 305, 471, 597, 669
NspI RCATGY 1 cut(s) 509
PaeI GCATGC 1 cut(s) 509
PagI TCATGA 2 cut(s) 31, 46
PctI GAATGC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 191, 476, 619
PfoI TCCNGGA 1 cut(s) 465
PkrI GCNGC 3 cut(s) 333, 613, 680
PleI GAGTC 2 cut(s) 29, 58
PpsI GAGTC 2 cut(s) 29, 58
PpuMI RGGWCCY 1 cut(s) 595
Psp5II RGGWCCY 1 cut(s) 595
Psp6I CCWGG 1 cut(s) 465
PspEI GGTNACC 1 cut(s) 694
PspGI CCWGG 1 cut(s) 465
PspN4I GGNNCC 4 cut(s) 305, 471, 597, 669
PspPI GGNCC 2 cut(s) 96, 595
PspPPI RGGWCCY 1 cut(s) 595
RsaI GTAC 2 cut(s) 167, 556
RsaNI GTAC 2 cut(s) 166, 555
RseI CAYNNNNRTG 1 cut(s) 411
SacII CCGCGG 1 cut(s) 332
SaqAI TTAA 2 cut(s) 530, 648
SatI GCNGC 3 cut(s) 332, 612, 679
Sau3AI GATC 3 cut(s) 70, 121, 325
Sau96I GGNCC 2 cut(s) 96, 595
SchI GAGTC 2 cut(s) 29, 59
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 1 cut(s) 261
SetI ASST 9 cut(s) 121, 132, 380, 529, 687, 753, 787, 796, 866
SfaNI GCATC 2 cut(s) 292, 817
SfcI CTRYAG 1 cut(s) 447
Sfr303I CCGCGG 1 cut(s) 332
SgrBI CCGCGG 1 cut(s) 332
SinI GGWCC 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 3 cut(s) 57, 647, 807
SmoI CTYRAG 3 cut(s) 57, 647, 807
SpeI ACTAGT 1 cut(s) 854
SphI GCATGC 1 cut(s) 509
Sse9I AATT 8 cut(s) 106, 265, 292, 349, 370, 662, 737, 767
SsiI CCGC 5 cut(s) 329, 331, 503, 509, 631
SspMI CTAG 4 cut(s) 8, 315, 704, 855
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 2 cut(s) 12, 406
TaaI ACNGT 3 cut(s) 188, 218, 448
TasI AATT 8 cut(s) 106, 265, 292, 349, 370, 662, 737, 767
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 3 cut(s) 191, 476, 619
Tru1I TTAA 2 cut(s) 530, 648
Tru9I TTAA 2 cut(s) 530, 648
TscAI CASTG 3 cut(s) 193, 305, 451
TseI GCWGC 2 cut(s) 611, 678
TspDTI ATGAA 2 cut(s) 54, 780
TspRI CASTG 3 cut(s) 193, 305, 451
Vha464I CTTAAG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 595
XapI RAATTY 1 cut(s) 767
XceI RCATGY 1 cut(s) 509
XspI CTAG 4 cut(s) 8, 315, 704, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.