Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002343.1

Orthogroup ID

OG0012195

Physical Location & Seq

Genomic Coordinates Reverse (-)

380339 .. 383937

Gene Structure 3599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002343.1_g000071.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

atggcacttgccaaggataggatgccccatgattcacttcagcatcaagtaatttcttcagatcatcatctttctaataatggttttgtttttagatcagcagcttccacaacaagttgttatcaagctgaagatgatcatgatcaggtagctgcaggccagtcagtcatcaacttcaagaataatggctacaacagtagtttcatccatgacaacagtgcgtctctgcttagttttgagaaaagcaacaacggcattactcatgacaacgatagttacaactgcatcagcagggtcgatccagttcgcctgtccggtgatttcaattgctttcagacagctagcaataacagcagttccttatccaatccctcaaatgaaagccatggatcagaattagggtcagcttatgggtggttgtactcggacgcaactctaatggcagaaagctttcctgaatcggaaacacaagtcgaagcagcctttcaaaagcgcccccataagggagagaacatgcaacctttaaagaggcaatgcaccagtgctgttgttgctgctgctactgctacaaccaagaagcccaaacctaagtcttcaagtccctcaaaggatccccaaagtattgccgccaaggtaattaatctaattgcttcagatgtactcaacgtacagatgacttatactaatacagcttccacaacaagttgttatcaagctgaagatgatcatgatcaggtagctgcaggccagtcagtcatcaacttcaagaataatggctacaacagtagtttcatccatgacaacagtgcgtctctgcttagttttgagaaaagcaacaacggcattactcatgacaacgatagttacaactgcatcagcagggtcgatccagttcgcctgtccggtgatttcaattgctttcagacagctagcaataacagcagttccttatccaatccctcaaatgaaagccatggatcagaattagggtcagcttatgggtggttgtactcggacgcaactctaatggcagaaagctttcctgaatcggaaacacaagtcgaagcagcctttcaaaagcgcccccataagggagagaacatgcaacctttaaagaggcaatgcaccagtgctgttgttgctgctgctactgctacaaccaagaagcccaaacctaagtcttcaagtccctcaaaggatccccaaagtattgccgccaagaatcggagagagcgcattagcgagcggcttaagatactccaggaactggtgcccaatggctgcaaggttgatttagtaaccatgttagagaaagccattagttatgtcaaattccttcaattgcaagtcaaggtcttggcaaccgatgaattttggcccattcaaggtgggaaagctcctgatatttctcaagtaaaagaagccattgatgccatcctctcatctcaaagagacacaagttcaagctcaaagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

492

Amino Acids

53.5

Weight (kDa)

6.07

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66470 AT5G37800
fragaria_vesca	FvH4_1g28930 FvH4_1g28930
malus_domestica	MD09G1262000.v1.1 MD17G1257000.v1.1
prunus_persica	Prupe.3G159800_v2.0.a1
pyrus_communis	pycom09g17630 pycom17g25930
rosa_chinensis	RchiOBHm_Chr3g0493491
rosa_laevigata	RLG00000022711
rosa_multiflora	Rmu_sc0002343.1_g000071
rosa_roxburghii	Rroxscaffold_6G00391560
rosa_rugosa	Rorug03G0261100.1
rosa_samantha	Rh3AG310400 Rh3BG346600 Rh3CG344400 Rh3DG345700
rosa_wichuraiana	Rw3G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1270
AccB7I	CCANNNNNTGG	1 cut(s)	1267
AccBSI	CCGCTC	1 cut(s)	1246
AciI	CCGC	3 cut(s)	627, 1215, 1246
AclWI	GGATC	8 cut(s)	293, 397, 605, 618, 881, 985, 1193, 1206
AcsI	RAATTY	2 cut(s)	1331, 1370
AcuI	CTGAAG	5 cut(s)	23, 42, 150, 636, 738
AfaI	GTAC	4 cut(s)	422, 660, 669, 1010
AfiI	CCNNNNNNNGG	8 cut(s)	18, 502, 503, 1090, 1091, 1224, 1267, 1385
AflII	CTTAAG	1 cut(s)	1250
AjnI	CCWGG	1 cut(s)	1260
Alw26I	GTCTC	3 cut(s)	228, 816, 1446
AlwI	GGATC	8 cut(s)	293, 397, 605, 618, 881, 985, 1193, 1206
AlwNI	CAGNNNCTG	1 cut(s)	1267
AoxI	GGCC	3 cut(s)	157, 745, 1376
ApoI	RAATTY	2 cut(s)	1331, 1370
AseI	ATTAAT	1 cut(s)	639
Asp700I	GAANNNNTTC	2 cut(s)	450, 1038
AspLEI	GCGC	3 cut(s)	495, 1083, 1236
AspS9I	GGNCC	1 cut(s)	1377
AsuHPI	GGTGA	2 cut(s)	329, 917
AsuNHI	GCTAGC	2 cut(s)	341, 929
BaeGI	GKGCMC	1 cut(s)	1275
BamHI	GGATCC	2 cut(s)	610, 1198
BanI	GGYRCC	1 cut(s)	1270
BbsI	GAAGAC	2 cut(s)	585, 1173
BccI	CCATC	1 cut(s)	1442
BceAI	ACGGC	2 cut(s)	268, 856
BciT130I	CCWGG	1 cut(s)	1262
BclI	TGATCA	4 cut(s)	136, 142, 724, 730
BcoDI	GTCTC	3 cut(s)	228, 816, 1446
BfaI	CTAG	2 cut(s)	342, 930
BfmI	CTRYAG	2 cut(s)	153, 741
BfoI	RGCGCY	2 cut(s)	496, 1084
BfrI	CTTAAG	1 cut(s)	1250
Bme1390I	CCNGG	1 cut(s)	1262
BmgT120I	GGNCC	1 cut(s)	1377
BmiI	GGNNCC	3 cut(s)	612, 1200, 1272
BmrFI	CCNGG	1 cut(s)	1262
BmsI	GCATC	5 cut(s)	12, 52, 294, 882, 1420
BmtI	GCTAGC	2 cut(s)	345, 933
BpiI	GAAGAC	2 cut(s)	585, 1173
BpmI	CTGGAG	1 cut(s)	1244
BpuEI	CTTGAG	1 cut(s)	1395
BsaBI	GATNNNNATC	3 cut(s)	66, 141, 729
BsaJI	CCNNGG	4 cut(s)	12, 385, 630, 973
BsaWI	WCCGGW	2 cut(s)	314, 902
Bsc4I	CCNNNNNNNGG	8 cut(s)	18, 502, 503, 1090, 1091, 1224, 1267, 1385
Bse1I	ACTGG	7 cut(s)	160, 302, 540, 748, 890, 1128, 1272
Bse3DI	GCAATG	2 cut(s)	539, 1127
Bse8I	GATNNNNATC	3 cut(s)	66, 141, 729
BseBI	CCWGG	1 cut(s)	1262
BseDI	CCNNGG	4 cut(s)	12, 385, 630, 973
BseGI	GGATG	4 cut(s)	27, 204, 792, 1434
BseJI	GATNNNNATC	3 cut(s)	66, 141, 729
BseLI	CCNNNNNNNGG	8 cut(s)	18, 502, 503, 1090, 1091, 1224, 1267, 1385
BseMI	GCAATG	2 cut(s)	539, 1127
BseNI	ACTGG	7 cut(s)	160, 302, 540, 748, 890, 1128, 1272
BseSI	GKGCMC	1 cut(s)	1275
BshFI	GGCC	3 cut(s)	159, 747, 1378
BshNI	GGYRCC	1 cut(s)	1270
BsiSI	CCGG	2 cut(s)	315, 903
BslFI	GGGAC	2 cut(s)	585, 1173
BslI	CCNNNNNNNGG	8 cut(s)	18, 502, 503, 1090, 1091, 1224, 1267, 1385
BsmAI	GTCTC	3 cut(s)	228, 816, 1446
BsmBI	CGTCTC	2 cut(s)	228, 816
BsmFI	GGGAC	2 cut(s)	585, 1173
BsnI	GGCC	3 cut(s)	159, 747, 1378
Bsp1286I	GDGCHC	1 cut(s)	1275
Bsp19I	CCATGG	2 cut(s)	385, 973
BspACI	CCGC	3 cut(s)	627, 1215, 1246
BspANI	GGCC	3 cut(s)	159, 747, 1378
BspHI	TCATGA	4 cut(s)	139, 262, 727, 850
BspLI	GGNNCC	3 cut(s)	612, 1200, 1272
BspMAI	CTGCAG	2 cut(s)	157, 745
BspOI	GCTAGC	2 cut(s)	345, 933
BspPI	GGATC	8 cut(s)	293, 397, 605, 618, 881, 985, 1193, 1206
BspT107I	GGYRCC	1 cut(s)	1270
BspTI	CTTAAG	1 cut(s)	1250
BsrBI	CCGCTC	1 cut(s)	1246
BsrDI	GCAATG	2 cut(s)	539, 1127
BsrI	ACTGG	7 cut(s)	160, 302, 540, 748, 890, 1128, 1272
BssECI	CCNNGG	4 cut(s)	12, 385, 630, 973
BssT1I	CCWWGG	4 cut(s)	12, 385, 630, 973
Bst2UI	CCWGG	1 cut(s)	1262
Bst4CI	ACNGT	4 cut(s)	197, 218, 785, 806
BstAFI	CTTAAG	1 cut(s)	1250
BstC8I	GCNNGC	5 cut(s)	157, 343, 745, 931, 1244
BstDEI	CTNAG	4 cut(s)	230, 588, 818, 1176
BstDSI	CCRYGG	2 cut(s)	385, 973
BstF5I	GGATG	4 cut(s)	27, 204, 792, 1434
BstH2I	RGCGCY	2 cut(s)	496, 1084
BstHHI	GCGC	3 cut(s)	495, 1083, 1236
BstMAI	GTCTC	3 cut(s)	228, 816, 1446
BstMWI	GCNNNNNNNGC	9 cut(s)	252, 351, 551, 563, 840, 939, 1139, 1151, 1430
BstNI	CCWGG	1 cut(s)	1262
BstNSI	RCATGY	2 cut(s)	517, 1105
BstSCI	CCNGG	1 cut(s)	1260
BstSFI	CTRYAG	2 cut(s)	153, 741
BstSLI	GKGCMC	1 cut(s)	1275
BstV2I	GAAGAC	2 cut(s)	585, 1173
BstX2I	RGATCY	2 cut(s)	610, 1198
BstYI	RGATCY	2 cut(s)	610, 1198
BsuRI	GGCC	3 cut(s)	159, 747, 1378
BtgI	CCRYGG	2 cut(s)	385, 973
BtsCI	GGATG	4 cut(s)	27, 204, 792, 1434
BtsIMutI	CAGTG	4 cut(s)	223, 547, 811, 1135
Cac8I	GCNNGC	5 cut(s)	157, 343, 745, 931, 1244
CaiI	CAGNNNCTG	1 cut(s)	1267
CciI	TCATGA	4 cut(s)	139, 262, 727, 850
CfoI	GCGC	3 cut(s)	495, 1083, 1236
Cfr13I	GGNCC	1 cut(s)	1377
CseI	GACGC	4 cut(s)	210, 437, 798, 1025
Csp6I	GTAC	4 cut(s)	421, 659, 668, 1009
CviQI	GTAC	4 cut(s)	421, 659, 668, 1009
DdeI	CTNAG	4 cut(s)	230, 588, 818, 1176
DraI	TTTAAA	2 cut(s)	525, 1113
Eco130I	CCWWGG	4 cut(s)	12, 385, 630, 973
Eco57I	CTGAAG	5 cut(s)	23, 42, 150, 636, 738
EcoRII	CCWGG	1 cut(s)	1260
EcoT14I	CCWWGG	4 cut(s)	12, 385, 630, 973
ErhI	CCWWGG	4 cut(s)	12, 385, 630, 973
Esp3I	CGTCTC	2 cut(s)	228, 816
FaqI	GGGAC	2 cut(s)	585, 1173
FbaI	TGATCA	4 cut(s)	136, 142, 724, 730
FokI	GGATG	4 cut(s)	34, 191, 779, 1421
FspBI	CTAG	2 cut(s)	342, 930
GlaI	GCGC	3 cut(s)	494, 1082, 1235
GsuI	CTGGAG	1 cut(s)	1244
HaeII	RGCGCY	2 cut(s)	496, 1084
HaeIII	GGCC	3 cut(s)	159, 747, 1378
HapII	CCGG	2 cut(s)	315, 903
HgaI	GACGC	4 cut(s)	210, 437, 798, 1025
HhaI	GCGC	3 cut(s)	495, 1083, 1236
Hin6I	GCGC	3 cut(s)	493, 1081, 1234
HinP1I	GCGC	3 cut(s)	493, 1081, 1234
HindIII	AAGCTT	2 cut(s)	448, 1036
HinfI	GANTC	4 cut(s)	32, 458, 1046, 1222
HpaII	CCGG	2 cut(s)	315, 903
HphI	GGTGA	2 cut(s)	329, 917
Hpy188III	TCNNGA	9 cut(s)	140, 178, 263, 455, 728, 766, 851, 1043, 1400
HpyAV	CCTTC	1 cut(s)	1346
HpyCH4III	ACNGT	4 cut(s)	197, 218, 785, 806
HpyCH4IV	ACGT	1 cut(s)	666
HpyF10VI	GCNNNNNNNGC	9 cut(s)	252, 351, 551, 563, 840, 939, 1139, 1151, 1430
HpyF3I	CTNAG	4 cut(s)	230, 588, 818, 1176
HpySE526I	ACGT	1 cut(s)	666
HspAI	GCGC	3 cut(s)	493, 1081, 1234
Ksp22I	TGATCA	4 cut(s)	136, 142, 724, 730
LmnI	GCTCC	1 cut(s)	1402
LweI	GCATC	5 cut(s)	12, 52, 294, 882, 1420
MaeI	CTAG	2 cut(s)	342, 930
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	3 cut(s)	275, 863, 1297
MbiI	CCGCTC	1 cut(s)	1246
MboII	GAAGA	5 cut(s)	48, 143, 585, 731, 1173
MfeI	CAATTG	3 cut(s)	325, 913, 1340
MflI	RGATCY	2 cut(s)	610, 1198
MhlI	GDGCHC	1 cut(s)	1275
MnlI	CCTC	7 cut(s)	382, 522, 613, 970, 1110, 1201, 1448
MroXI	GAANNNNTTC	2 cut(s)	450, 1038
MseI	TTAA	4 cut(s)	524, 639, 1112, 1251
MspCI	CTTAAG	1 cut(s)	1250
MspI	CCGG	2 cut(s)	315, 903
MspR9I	CCNGG	1 cut(s)	1262
MunI	CAATTG	3 cut(s)	325, 913, 1340
MvaI	CCWGG	1 cut(s)	1262
MwoI	GCNNNNNNNGC	9 cut(s)	252, 351, 551, 563, 840, 939, 1139, 1151, 1430
NcoI	CCATGG	2 cut(s)	385, 973
NheI	GCTAGC	2 cut(s)	341, 929
NlaIV	GGNNCC	3 cut(s)	612, 1200, 1272
NspI	RCATGY	2 cut(s)	517, 1105
PagI	TCATGA	4 cut(s)	139, 262, 727, 850
PdmI	GAANNNNTTC	2 cut(s)	450, 1038
PfeI	GAWTC	4 cut(s)	32, 458, 1046, 1222
PflMI	CCANNNNNTGG	1 cut(s)	1267
PfoI	TCCNGGA	1 cut(s)	1260
PshBI	ATTAAT	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	1260
PspGI	CCWGG	1 cut(s)	1260
PspN4I	GGNNCC	3 cut(s)	612, 1200, 1272
PspPI	GGNCC	1 cut(s)	1377
PstI	CTGCAG	2 cut(s)	157, 745
PstNI	CAGNNNCTG	1 cut(s)	1267
PsuI	RGATCY	2 cut(s)	610, 1198
RsaI	GTAC	4 cut(s)	422, 660, 669, 1010
RsaNI	GTAC	4 cut(s)	421, 659, 668, 1009
SaqAI	TTAA	4 cut(s)	524, 639, 1112, 1251
Sau96I	GGNCC	1 cut(s)	1377
ScrFI	CCNGG	1 cut(s)	1262
SduI	GDGCHC	1 cut(s)	1275
SfaNI	GCATC	5 cut(s)	12, 52, 294, 882, 1420
SfcI	CTRYAG	2 cut(s)	153, 741
SmlI	CTYRAG	2 cut(s)	1250, 1410
SmoI	CTYRAG	2 cut(s)	1250, 1410
SsiI	CCGC	3 cut(s)	627, 1215, 1246
SspMI	CTAG	2 cut(s)	342, 930
StyD4I	CCNGG	1 cut(s)	1260
StyI	CCWWGG	4 cut(s)	12, 385, 630, 973
TaaI	ACNGT	4 cut(s)	197, 218, 785, 806
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	4 cut(s)	297, 474, 885, 1062
TatI	WGTACW	3 cut(s)	420, 658, 1008
TauI	GCSGC	3 cut(s)	629, 1217, 1249
TfiI	GAWTC	4 cut(s)	32, 458, 1046, 1222
Tru1I	TTAA	4 cut(s)	524, 639, 1112, 1251
Tru9I	TTAA	4 cut(s)	524, 639, 1112, 1251
TscAI	CASTG	4 cut(s)	223, 547, 811, 1135
TspDTI	ATGAA	5 cut(s)	193, 393, 781, 981, 1383
TspRI	CASTG	4 cut(s)	223, 547, 811, 1135
Van91I	CCANNNNNTGG	1 cut(s)	1267
Vha464I	CTTAAG	1 cut(s)	1250
VspI	ATTAAT	1 cut(s)	639
XapI	RAATTY	2 cut(s)	1331, 1370
XceI	RCATGY	2 cut(s)	517, 1105
XmnI	GAANNNNTTC	2 cut(s)	450, 1038
XspI	CTAG	2 cut(s)	342, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.